Array 1 236601-236168 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895378.1 Paenibacillus sanguinis 2301083 = DSM 16941 C557DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 236600 32 93.8 35 ...........C..G................. GCAAAAGAACTCCAACTTAATGTGAAGACAGCACA 236533 32 100.0 35 ................................ AACGTTGTCCAGGGCGAGGTTTATGTTTTGATAAT 236466 32 96.9 34 ...................T............ TGAACGTCGGGGGCGGTCACGCATCGGCTATCGC 236400 32 100.0 34 ................................ AGGTTCTGCCTTGAATCTAAATGATACGAAAGAA 236334 32 100.0 35 ................................ ATCTACAACAAGCACGATAACTCCAACAATGGCAT 236267 32 90.6 36 ...........C.C.........A........ GTTGAGAAGGAAGGCTATTTTGCTTCTTTAAAGGAT 236199 32 84.4 0 ...........C........A..T...A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 95.1 35 GTCGCACCTTATGTAGGTGCGTGGATTGAAAT # Left flank : CCCCGGAAGAGGGCATCAAGGAGATTACGGGTAGCGGGAACGGGAGACTTGACTCTATCAGTAATGCTTTGCAAACGTATCTCGGTATAGCTTATACGGATCTGGTATACACGGAACATGCATTGGAAACGGGCTCCAAATCCCAAGCCGTCTCCTATATCGGAGTGACTGCGGCCGATGGACACATCCATTGGGGCTGCGGCATCGATGTGGATATTATGACTTCCTCGGTAAAAGCACTCTTTAGTGCCGTAAACCAAATGATTGCCAAGGGACAGCAATAAATAGGTAGTTTAAATCGTTAGTCTGATGCCATTGGGTAAAAAAGTAGCGGTGCGAACCCCAAGCTCACATGATTTCCCTGGGAGATTCGCACCACGCGCCCCACAAGGGTTCCCGGGTTTTCAGCCAGTTTTTGCTCGAAATTTCAAGCCTTATTTTCGAGATTCGTACTTTAGGGCCTTTGAGCCCTTGCTGGGCCTGGGCTCATTTGTACCGCT # Right flank : TCGAGAGAGTCGCAGCGCCCCGATCCGACCCTCTACGAGGTGGCAGGCCAACAAGCAACTCAGCCTTCTGAGCGGCTGCCCCTGGAGGGAATAGAGCAAAATGACAGTTGAAGAGACCGGACCGGAAGTCATGAACCATGGCTGGAAGGACGGCCTCTTTTTTGTTCTGTTCGGGTAAAAAACATATAAAAATAGAGGCTCAAACTAAAAATCAGTGCTTGACAACAGGGATCTATAGAGCGGAGGGGCGTAGGGATTCTGGAGAAACTTAAAGCTTTCTGAAAGAAAGCTACATCGAAAGCCTACGCTTGGTCGACTTTTGCGAGTGGATTTCAACCTTATAAGAATTTATTGAATCAGGAAAATCCATGAACAATTGCGATCGGAAGAACCCTACGAACCTACAGCACCTCATCGTCCCCATGACAAGCACTGATTTCGGTTTTGAGCCAAAATAGATTCATGTAAAAATGAAAGGGCTTGCAGAAATATTTAGGGTA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 270210-268658 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895378.1 Paenibacillus sanguinis 2301083 = DSM 16941 C557DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================== ================== 270209 32 100.0 35 ................................ TTTTCAAGATGGCTAACTATTTTGGGGTTTCCGCA 270142 32 100.0 38 ................................ AATCCACGCACCCGCGTGGGGTGCGACAGTTGCGGCAC 270072 32 100.0 34 ................................ CGCGCTACCGCTGCGCTTAGCGGTTTCGGATCGT 270006 32 100.0 33 ................................ CTTGCCAGAGCCGATTGTCGATGAATTGATTTG 269941 32 100.0 34 ................................ ACTCCCCTCTGCCAGCGCGTAGTAAACGATGGGA 269875 32 100.0 34 ................................ CCCTAGGCTAATCATGAACGTTATTCGTTTGAAG 269809 32 100.0 35 ................................ TTTTCGGGTGAGAGTAAAATTTCTCCCCGCACAAA 269742 32 100.0 33 ................................ TGAAGTCATGCTATTGGGTAACGTCCTTAAGTC 269677 32 100.0 33 ................................ CTGGCTCTCGTGTCAGACAAGCTAGATTATTAA 269612 32 100.0 33 ................................ AATAAGCCAGAGGATAGCATGAAAGAAGAACTC 269547 32 100.0 36 ................................ GTCCTCACGCCTCATTATGTGGACAGGGCTATATCC 269479 32 100.0 33 ................................ GTACGGTTATAAAAATGATAGCCGAAAGTTTTC 269414 32 100.0 35 ................................ CTGATAAATCTCTTGAGAGATGTCTTTAAATTCGG 269347 32 100.0 33 ................................ ACTTTGAATTGTTTGCACGTTGATTTCCGCAAT 269282 32 100.0 37 ................................ CCAACGATATGAATGTCAAGCTGCCCGTACATGAACA 269213 32 100.0 35 ................................ AACAAGGAAAAATTTCCTTGTCTGAATCAACATGA 269146 32 100.0 33 ................................ TTGGAAGACTTGGGGCTTGAAAAAGAGGTAATT 269081 32 100.0 35 ................................ AACGCTTACCTGGTCTTTGATAGAAATGAATGGAG 269014 32 96.9 35 ...........................G.... CAGGACAGCATCCACGCTATCAATTGATCCGATGT 268947 32 93.8 36 .............C.............G.... CATTAGGGGGGACGGCGGATGAGCTTAGATGTGGTT 268879 32 84.4 36 ............AC......C......G...G ACATCCTCAAAAACGTACGGGTTAATTTTAATTTCT 268811 32 84.4 88 ...A.....C........C........C.G.. TCCCCGATGCTCTGATCCTTCAGTCCCACCCCACGTAAACGTATGGATAAATAGCCTCCTGGCTTCCAGGAGGCTGGCTTTGTGTTTC AAT [268783] 268688 31 75.0 0 TA.C.........C.A.......A...-.G.. | ========== ====== ====== ====== ================================ ======================================================================================== ================== 23 32 97.2 37 GTCGCACCTTACGTAGGTGCGTGGATTTAAAT # Left flank : GGACCCGCTGGAACATGCAATCAATAAAGAACATTTGAAGCGAATTAACTTAGAAATTGGTCGACCTTTGAGAAGATATGATAGTATACTGGATTATATCCCAACGCAATATATTGCTGACTATATCAAAAGTATTAGGTATGAAGGTAAGCCGGAATACGCCGGGATTGAATACAACAGTACAGTTAAGTTGGACGGGTATAATCTGGCGATTTTTTATCCGGACATTTTCCAGTGTACCGATGTTGAAGTATATCATATTAGTGACTTGGCCTACGGAAAAGAGAGAATATAGACGACGCATCTGTGTAACCTTATAATAAATACGCTGGTGCGAACCCCAAGCGAACATGATTTTCCTGGGAGATTCGCACCAAAATAAGTTACTTTCATTTCGTTATATGTAAAAATATAGAATTTTTTCGAGCCGTTTTTAATTAAAGTAAGGCTATGAATGGCTAATTAGGCAGCATAATACCCTTATTATGTTAAAAATCGGA # Right flank : ACCAGAGCAGGAATTATTATTTTGCGGGCTTCTCTTTTACACTTTGTTTTAAAAAGGAAAGAAAAGTTTGTCCCGCTTTCGACAGGTAGGCGGTTTTATTGCTGGCAATGCCTAATTGCAGGAAAATAGGAGGGTTCAGGGGAACCGCCTTGATTCGGGGGGAATTCTGGGCAATATCCCGTAGAAACAGCGTTATCCCGATCCCTTCAGCCACGCAGGACTGAATCAATGACAATTGGTTAGAGGTGAGTGTAATGTTAGGCTCCGCATTGGCGGGATGAGTCTGGTTTTCTCCAAGGTATTGACGGCTTACCTCAATAAGTAATTTACGTTGCAAATAACCTTCCTTAAACAAAATCAACGGTTCATTAACAAGCTCCTTCAAGGAAATCGCGGGCTTGTCGGAGAGCGGATGGTTCACAGGAAAGCACGCGACCATCTCTTCCTTAAACAGTGGGGTTATATCCAGATCGGGTCCAGCTTGCTCCATCATAATGAAG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACGTAGGTGCGTGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 279625-277987 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895378.1 Paenibacillus sanguinis 2301083 = DSM 16941 C557DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 279624 32 100.0 35 ................................ TGCTGCATCATGCATTTTAAGGCCATGAGCCTTAC 279557 32 100.0 35 ................................ TACTAACCGCAATGATGCCATTAGCCCCCTCGGCC 279490 32 100.0 34 ................................ TCCTTCCGTCCTCATCCAGTATCTCCGGCTTATT 279424 32 100.0 35 ................................ CGTTAACGCGGAATCTAAGATTCGCCGTTGACGTT 279357 32 100.0 33 ................................ ATTTCGACGCTGACCAGTGCCGTGAGCTCCACC 279292 32 100.0 36 ................................ AATAAGCCAGAGGATAGCATGAAAGAAGAACTCAAC 279224 32 100.0 34 ................................ CCGGCCATCAGGTGTTCACCTGCCGCCTAACCTT 279158 32 100.0 36 ................................ TGCCGGATCGCACCATCCATGGCGGTTGTAGCTGCC 279090 32 100.0 35 ................................ AAATCATTGGAAGATTAAAAATGAACGTAATCAAA 279023 32 100.0 33 ................................ ACTTTTGAGAAAAAGGGGGAACGCACATGAACC 278958 32 100.0 34 ................................ ATCGTCCGGTATCATGTCAATCACACTGAGCAAC 278892 32 100.0 34 ................................ TTTAATTCTGAAAGCCTTGGATCACTGATACTGG 278826 32 100.0 37 ................................ AGATCATGCTTGCCGACCGGGAGCGTAAATGGCAAGG 278757 32 100.0 35 ................................ TTCTCGGCTAGTTGAGATTCGTAATCTTGCTCAGA 278690 32 100.0 35 ................................ TGCGGGGGAAACGACTACCAGACGTCATAGATTGC 278623 32 100.0 34 ................................ ATGGAGATGGGAACAGGAAAAAGTCGCACTGGCA 278557 32 100.0 33 ................................ CGGCGGGCGGAAATTGAAGCGCTGGAACACAGC 278492 32 100.0 36 ................................ CTCTGCCAATGACTTCGTTACGTTGACAAGTTTTAC 278424 32 100.0 34 ................................ CCGAAGGCAGCGACATTATAGCCTGGTATGTCAT 278358 32 100.0 35 ................................ GCTGACAACCTTTACGGATGGGAATGCACTAATTT 278291 32 100.0 35 ................................ CGTCTGAACATCGTGTAACCAACCATTTCTTCAAG 278224 32 100.0 37 ................................ TTGTTGACGACATGAAGCGTTCGGATTGGCGATTATC 278155 32 100.0 35 ................................ ATTGATTTGGTGGGTCTCGATCCTCTTTTGACAGA 278088 32 100.0 37 ................................ CCGCAGCGTCTTGGATGTTTACGCCGAGCAGGTCCAT 278019 32 96.9 0 ...............................C | G [277989] ========== ====== ====== ====== ================================ ===================================== ================== 25 32 99.9 35 GTCGCACCTTACATAGGTGCGTGGATTGAAAT # Left flank : TCGGAAGAACCCTACGAACCCGCAGCGCCTCATCGTCCACATGACAAGCACTGATTTTCGTTTTGAGCCCGAAATACCACCCTTTAAACTCTAAATAGATCATAGGAATTACAATAATGAGAATATGAGCTACGCCCTGCTAGGATTGAAAGGAGGGGCGTATGACATTGTGTTTCCCAGATAAAGGTATCTGATATTGTAATTGATGTGCGAGATAGACAGCAGCATTGCTGGAAGAACGAGTGGAAGAAAAATGGTATTGCACTTGTGGTTGCAATTTTAGAAAAATAAAACAATAATTAGGGTAACTGTATTGTGAAAATCATTTTGGTGCGAACCCCAAGCGAACATGATTTTCCTGGGAGATTCGCACCAAAATAAGTTACTTTCATTTCTCTATATGTAAAAATATAGAATTTTTTTTGAGCCGTTTTTAATTAAAATAAGGCTATGAATGGCTAATTAGGCAGCACAATACCCTTATTATGTTAAAAATCGGA # Right flank : TAAACCTTTTTAGCTGTTTATCATGCTATATATCAAATAATCTATAGATTTGGAGAAACGTATGGATCAACGACACCCTATTTTTTCCTTGGAATACCTGCCTTTGCTTGTCCGCCTAACTTGTCTGGAGACGGCCAGATTACCCGCTTTTCTTGGTTCAACTCTTCATGGTGTTGTGGGGTGGGCGTTGCAGAGTAATAGGGAGACTTATACTTACTTGTTCGAGAATCGCCGTTTGGGTGGAGCAAAGCAGGATATTGTGAACCCCTATATGCTCGAACCGCCGAGACCGCGAAGTGTTTATCATCCCGGAGATGAGCTGTCCTTCAAGCTTGTGTTGTTTGGACATGCTATAAACTATGCAGAGAGAATGGTAACTGCGCTCGCAAAAACAAATACATTTAAGGTGGGGGCCGAACGAAGAAGCTTCAAATTGATGGATATTCTCCACGCTGAACACCTTTCTCCCATATGGCAAAAAGATCATAATCATCTGAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 210560-208516 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895380.1 Paenibacillus sanguinis 2301083 = DSM 16941 C557DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 210559 33 97.0 33 ................................T GTAGTGTCGATAGGAATTTCTGTCGGAAGTTCA 210493 33 100.0 32 ................................. AAAGTGGTGATGTTTTGTCCCGTAGCGCTCCA 210428 33 97.0 35 ................................C GTAAGAAAGAGAATATATCGGGCCGGACTTCCGGC 210360 33 97.0 33 ................................T TTGCGACGAAAGTAAGACGCGCGTAAGCCCACG 210294 33 100.0 37 ................................. TCTAGTAATTCTTCATTGCTCAGGAAAAATCTCACAA 210224 33 97.0 34 ................................C GTTGCGGGCATCTTACCAACGCTATCAAAGTACG 210157 33 100.0 35 ................................. ACTGCGAGATCAGTATAGATACTCAGGGGAACGTT 210089 33 97.0 33 ................................C AATCTCTCTGGCGTCATTTTTGCTTCGCTCCCT 210023 33 97.0 33 ................................T CGAACAGAAGCTGCTTACGGTTGTTGTACTTGG 209957 33 97.0 35 ................................T TTTTGATATCAAATACAGTAGCCTTTCGGCTGCTC 209889 33 100.0 34 ................................. ACCACGCTTACCCGCTGCAACGCCTCCGCCACTC 209822 33 100.0 34 ................................. AACTGATAGCGACGCTCCAGGATCTTAAATCTTG 209755 33 100.0 33 ................................. AGCTTCTGGAGATAGCATGATTAATGCCCGAAT 209689 33 97.0 33 ................................T TGGCATCCCACGCAGGGTGATGCGTCGTGTACA 209623 33 100.0 34 ................................. TCTACATCGAAGACGAATACAACGAGGTTGCCCA 209556 33 97.0 35 ................................T GCCATATATGCAACTCGCGAGTATGTCAATCAGCA 209488 33 100.0 33 ................................. AGTTTTTTTAAATTTAGCCTGGTCGCGTTGGTA 209422 33 97.0 36 ................................C CTGCTCGATATTGCTACGCGCCCGCGATACAGCCGT 209353 33 100.0 35 ................................. CAGAAGATCATCACGTTACTGCGCCGAAACCTGTC 209285 33 97.0 33 ................................T TGGTGTGCCCGCTGTTCTCTTCTTGCTTCTATC 209219 33 97.0 34 ................................C ACCCGAACTGCCGTCACGTAATATCGCCGATACG 209152 33 97.0 32 ................................C CTGCAAGCGATCTACACAAAGGGCGGCTTCAA 209087 33 97.0 36 ................................G CAATATGGGTCTTATGCAGCACTAGGGCCACGGAAT 209018 33 100.0 34 ................................. ATCGAGGGCATCCCCGACTCACTTGGCAGAACCC 208951 33 97.0 33 ................................C ACGCTTTAAGGTCCGGCGCTTGTGGTCTGGCTT 208885 33 100.0 35 ................................. TCACCGTCCCAATTCCATAATCCTTGCTGCCCCTT 208817 33 97.0 34 ................................C CAAAAATTCGAGGATTTAATGGGAAGTCTAAAAT 208750 33 100.0 34 ................................. TCACTCAAGATAGCATCCATGGATACGGCCCAAG 208683 33 100.0 34 ................................. TTTGCATATCCCTCCCCGCGTAAGGCCGCCGCCA 208616 33 90.9 36 ...............A.......A........C GCTCAGGGAGAGCTTGAGCGATTAAAAGCGAGATAA 208547 32 84.8 0 ...............A....T.A-........G | ========== ====== ====== ====== ================================= ===================================== ================== 31 33 97.7 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAATA # Left flank : AAGTAGGTGTTGAATCATACTGGTACTTATCACTTATGATGTGAGCACTACGGATTCGGCCGGACAGCGTAGATTGCGCCAGGTAGCCAAGACTTGCCTGAATTGTGGACAACGGGTGCAGAACTCTGTATTCGAGTGCATCGTTGATGCTGCCGAATGGACATCCTTGAGACTACGTCTGCTAGAACTCATTGACCCGGAGCAGGATAGTATCCGTTTCTATCAATTGGGCAACCAGTACAAGAACAAGATAGAGCATGTGGGTACCAAATCATCCCTTGATTTGGAGGGGCCACTTATTCTGTAACGACCAAAATTGAAAAAATAGGCTGGTGCGAATGTGAAGCGAACATGATTTTCCCGGGGGATTCGCACCAAAATAAGTTACTTTCATTTGGTTATATGTAAAAATATTCAATTACTTGAGCGGTTTTTGATGATATAAGGGCCATAAATGGCTAATATAGCAGCATAATACCCTTATTATGTTAAAAATCGGA # Right flank : CAGTATAGCAGATTTTTTTTCGTGAGGGAGAAGGGAGAATGGGGAAGCCATGCAGACGATTATTGTTAGATTGAATCCTGTGCTGATGAGGAATCCCGATTTGGATATACGGTATGTTTTGCCGGATACCGTGGAGGCTTATACGGATAATAGTATTATGTACCAAGGCTATGATTATTTGAATGATTCTAACCATAGCATAGGAATCTGGCTGAGCTGCATGAATGCTGAGCGTGATTATTTAAGGGTGCTAGAATGCTTTAGGGAGCATCCTATTTTAAACAATGATCTGCTGCATTGTGCTGAGATCTATATCAGTACGGATGAAGTAGCCAAGCTAGAGGATTGTATCAAGGTCTACCCGCTGAACTCATTGGAATAGTGTTATTGTTGATTGAAACGTAGTCTCTGAAAATATCTATTTCAATTTCAGCGCCTGTGCCACAACCCACTCCAGCCACTTCCAAGGCAGATGTTCCTTCCCCCAAAGCATAGCTTTT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 221176-219409 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895380.1 Paenibacillus sanguinis 2301083 = DSM 16941 C557DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 221175 32 100.0 34 ................................ AATGCAATGGATATCCCATCAGAAGGGAATCCGA 221109 32 100.0 35 ................................ CGCAAGCTCCCGAGTGACACCAGCCGCGCCTATGC 221042 32 100.0 33 ................................ ATACAATGTTAAGGTGAAAATAATTAAAGTAGC 220977 32 100.0 33 ................................ AACCGTCTTAAAGAGAACTGATGCCCTATGTAA 220912 32 100.0 36 ................................ TGGAGCACCCGCCTCCTGGGAGTTGTCATCCGTGAA 220844 32 100.0 34 ................................ CAACTTGGAATATCAATCGTGCCCTTGACATCAT 220778 32 100.0 35 ................................ GGATCCGGATAAACGGTGAAGCCAGCCTCATCCAG 220711 32 100.0 33 ................................ AGTAGCCTTGATGGCAGTAGGAGAAGGTAGTTA 220646 32 100.0 36 ................................ TTAATTCATTATCTGCATCTTCCCAGCTCGTCTCCC 220578 32 100.0 35 ................................ CTTGTCCTGATCTGGAGCTGTCGAAAAACTTAGAC 220511 32 100.0 35 ................................ GTATTCGTCCACCCAATCAGCGCGCGTATACCAAC 220444 32 96.9 36 ...........T.................... TAATAAAAATGAAAAGTGAGGTTTTAAACGATGAAC 220376 32 96.9 34 ...........T.................... CTTGCGTAAAACCTTTGGGTATCATCATTACAGC 220310 32 93.8 34 ...........T.......T............ TGAATTGGTTCTTTTCACAAGTTCCAGCTGCTGC 220244 32 96.9 34 ...........T.................... TCCCGCAGCTTGGCAGCCGATAATATATTGCTGC 220178 32 96.9 36 ...........T.................... ACTCATCGTCTGGGTGTTGATTGCCCCGCCCGTGCC 220110 32 96.9 36 ...........T.................... AGCATGTGATCTGTACGGGCTCGGCAAGTTGCCTTC 220042 32 96.9 35 ...........T.................... CACATCGGGTTATGGGCGCAGAAGGGAGCAAGAAC 219975 32 96.9 34 ...........T.................... CCGCTTGGGTCATGGTCGCCTAAATGGAGAATGT 219909 32 100.0 34 ................................ AAGTTCGCCATCCATATTGTCAAACCAACTCCGA 219843 32 100.0 37 ................................ CGTCTCTGGATGTCCAGAATTAAATGTGATCGTGCCA 219774 32 100.0 35 ................................ CATAACAAGCACCTTTAAGATGGAGCTTGAAACAG 219707 32 96.9 34 ....A........................... GGTTGCTTGACTTAAGTTGATCTGCTCCATGAAT G [219690] 219640 32 100.0 34 ................................ CGGTGATATAAGGCCTGCATTAAATCTATCAATG 219574 32 93.8 34 .............................TC. GGTTGCTTTCCTTATTTTGATCCGTTTCGTGAAC G [219554] 219507 32 96.9 35 .............T.................. CAATAGTATTTTTCTTGAGTGCTGCTCAACATTTT 219440 32 96.9 0 A............................... | ========== ====== ====== ====== ================================ ===================================== ================== 27 32 98.4 35 GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Left flank : TCACCGATCTCACGATGCTGGAGAAGTTCCTTCTCTCCGCATCAAAATAGCTGCAAAGTAGTAAAGGGTCGCTACAAATCGGACCCTGTATAGGGCGCACTGAAGGGACGACTCCTGCATGATGCAGGGGTCGTTTTTTCAGTGTAAGGAAACCCCAAAATGCCATATTGTACTTGCGTAGGAAAAGCCAAGCTAGAAACCTTAATTAAATTATGAGATACTTTTAATTACAAGTTATCTGATTCAATTGAGTGTGTATTGGTAGAAGTAGCAGCTTTGCTAGCTTACATAATAAGATGATAAAAGAGCGCCATGACGTAATTTATGACTGGTGCGAATGTGAAGCGAACATGGTTTTCCCGGGAGATTCGCACCAAAATTAGTTACTTTCATTTGTATTAATGTATATATAAGGATATGAAAAGATGATTCTTAACACTGAATAGGGGGATAGGTGGCTGTTTATACCTTGAAATATCCTTATTCTGTTAAAAATCGGA # Right flank : TCAATTTCCAATTTATTGATTTCAGGCGGTTCTCTGCTACACGCTGGAGCAGGGACCAATGTCTATTCTATGGGGTGCACTTGAATATACGGCATACAGGGAAATAATAAAAAAGCCTGTCCAGTAAATCGGACAGACTACCAATAAATCATATAATTCAAAAGTAGTAAGAAGTAAAATGATAGGGTAAGTGTACCACAAGCAAGTCCTGCAATTGCCAAGCCTTTACCGGCATCATTGGATCTAGTAATTTCATTGGATGCCTGCCTTGCTAGAATAATTGAAATTATTGCTAAAATAAAGCCAAAAAGTGGTATTACTAAAGATAAAACCCCTAAAATTAAAGCAGCTACAGATTTAGCATTAACCCCTTCCGGTGAGCTTTTAAACAAAATTAAATCCTCCTTTGATTCCTCCATCTCATAACATTATCATGAACTGCTTATTTTTGTAAAAAGCGATGTATAACATTTTTTAAGAAAAGACCTCCCATCTTCGGA # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCTATGCGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //