Array 1 4322-2903 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLL01000025.1 Haloferax alexandrinus JCM 10717 contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4321 30 100.0 37 .............................. CCCTCCGGCGCGCCGCGCCCATCTGGTTCGCGGTCTG 4254 30 100.0 36 .............................. CATTAAGCACCGTCGGATTGCCCGAGCCGTCTCCGA 4188 30 100.0 36 .............................. TGTTTTTCACGGACCTTCATTGGGGGCAAGAAAACA 4122 30 100.0 37 .............................. ATCTACACCGGCGGGACTGGGGCGGCGATTCGGGGGA 4055 30 100.0 35 .............................. GATACGACTTGGAGCAACTATGACTCCAGAAGAAC 3990 30 100.0 37 .............................. GAATTGCTCGACCGGAAAACAATGCGCAAACTCTCGC 3923 30 100.0 35 .............................. ACTAATTGCGACAGTCTAAAAATGTAATGTCGAAG 3858 30 100.0 35 .............................. TGGTCTCCGAGGAGTTCACGAATGCGACGACCGGC 3793 30 100.0 36 .............................. ATCAGTCAACGACATTCGGCAGAGGCAGAACAGCCA 3727 30 100.0 37 .............................. CTCGCCGGTCTCCCCGACTCGCCACGCCTCACGGATG 3660 30 100.0 36 .............................. TCCCGCGAAGTGTAGCGGGCCGAGTAATACCATGAA 3594 30 100.0 37 .............................. TCCACAGGCGAGCGCCGCGACGCGCAACCGCCTGCTT 3527 30 100.0 36 .............................. GAATTACCCTGTCAATGCGTGCTTAATACTCTCCGA 3461 30 100.0 37 .............................. CGCTCGAAGGCCTTGCGAACTCGACATGATGTCATGC 3394 30 100.0 37 .............................. GACGTTGACAACGACGACAAACGGTTTGCGATAGAGT 3327 30 100.0 37 .............................. TCCCGACCGTCACGGCGCTCGGTCCTGATGAATCCCA 3260 30 100.0 33 .............................. GTCTCGGTCCACATGAGGGCCGTTCCTATGGGC 3197 30 100.0 35 .............................. TCTCTCGCGAAGTTCATCGCGACTCAGACCGCTGT 3132 30 100.0 36 .............................. TTGACCTGCTGCGCGACGGTCGCGTGACCGCGCCGT 3066 30 100.0 37 .............................. CGATGAAGATGCTCGGTGTCGAACTCGACACCGACGA 2999 30 100.0 37 .............................. TGGGTCGAACTCGCAAATGACGGCTCCACGTTCACGC 2932 30 90.0 0 ...............C..A.C......... | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 99.5 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCGACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCCGCGTGCGAACGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGTCGCGGCGTCGAGGAAGGTCCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGCGGTTCGTTTCCGTCGACCCCCCGGGGAAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACG # Right flank : AGAGAAACCACCCAACGAAAACAATCACCCGAACAGTCAATCCTGGTTTCAATTATTGCTGACCCGTCAAACTACGGGCATAATTTTATGTCGGGGAGCAAACAATCACGGGTACAACAATGAGTAGAGAAGGAGATATCGGATAACGTGCGAATCATGGCACACTTATCAGCGCGTTCCGATGCTGCGTATCAGAACGATTACCATCACAAGATTCGCGGGCGAATCTGGAACGCGCTCGATGGGACGGCCTACGGAGAACGACACGATTCCGGCGAGCCGCCGGGGTTCGCTTACTCGAATCCGTTTCCGCCTCGAAATATGCGGGAAGGTGACGACCGGAAGTTACTGGTCGCGTCGCCCGACGAGGAACTACTCGCAAACGTGGCGGCGAATCTGCTCGACGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAGGTAACATCCCTCGAACCCGACGTGGGCGAGCCTGGGACCAGGGGGACGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 57730-56238 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLL01000030.1 Haloferax alexandrinus JCM 10717 contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 57729 30 100.0 34 .............................. TGCATCCGGTGTGGGTTCGCAACTAACGCCGCTG 57665 30 100.0 37 .............................. GGCATGTTGAATCCGAAGTGGGACATCCCCTGCTCTT 57598 30 100.0 34 .............................. TTGCCGAACGCGAGGTTCGGCGTCGCCCACCATA 57534 30 100.0 35 .............................. GGCTACAACGGCGGCATGAACGGTATGCTGTCACT 57469 30 100.0 39 .............................. ACCTCGTTTTGGACAGTCATTTAGATCACCGCCCCGGTA 57400 30 100.0 36 .............................. CTGCAGCTGTGTCTCGCGGCCTTCGGGGCGGGCAAA 57334 30 100.0 35 .............................. TTTGAATGGCCGCAGAGTTGGGTGGATAGCCCCGA 57269 30 100.0 35 .............................. CCTCCAGGAGCAGGTGGTCGAGGAGGTCGACGAGA 57204 30 100.0 36 .............................. AGCTTTGACGCGATTGAGGCTAGCGAGTTCACGGTC 57138 30 100.0 36 .............................. TCAAGCAGAACCTGTTCTGGGCGCTCGGCTACAACA 57072 30 100.0 38 .............................. CCGATCCGGCGCGTGTTCCGGAAGTTCTCCTCGACAGT 57004 30 100.0 36 .............................. GTCGCCACCGCGACCGGCGAGAAGGTAGACCTCGAC 56938 30 100.0 39 .............................. TTGCCCGCCTTAACCGAGTTAGTGTCTGGCGTCGGCGCA 56869 30 100.0 35 .............................. ATCGGCCTCCAGGTCATGTCCAGCACTATCGAGCA 56804 30 100.0 37 .............................. TGACCATGCTCCGGATCTACAAGTCGCCGCTCCCGAG 56737 30 100.0 40 .............................. CCTTATCGATGGGCATCTCCTCCTTCGCATCCTGCACAGA 56667 30 100.0 34 .............................. TACCTCGGGGAGAACGAGACCGGAACGCGGGCGC 56603 30 100.0 38 .............................. GCTTGGGACGCTCTTAGTCAATGGTGTGGACGCGACGA 56535 30 100.0 37 .............................. CGAGCACGACCCTGCGCCGTTCCGCGTCGTCCTCGAC 56468 30 100.0 35 .............................. CGCCGGCTCGACAACGGCGCGCCCGGCCGCTTCCG 56403 30 100.0 38 .............................. CTCATCACACGCGGCAAGTGCGTGGTCGATGGCGTCCA 56335 30 100.0 38 .............................. CGTCTGTCTCAAGAGTCATTGTTCTATCTCCTCTGCGA 56267 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ======================================== ================== 23 30 99.0 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCACCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGATCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAGCCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGTATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 45678-43608 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLL01000024.1 Haloferax alexandrinus JCM 10717 contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 45677 30 100.0 33 .............................. GGCGGTCGAGCGCGGGTCGACGCGCTCGCCGGC 45614 30 100.0 35 .............................. GGTCGATAACGTCGTCTAGTGAGGTCATGGTCATT 45549 30 100.0 34 .............................. CATGCCCACGGGGGAGGAGTCGACAGATGCGCGT 45485 30 100.0 34 .............................. ACCCTGCCGCGACGCCCGTTTATGGCAATCTAGT 45421 30 100.0 38 .............................. ATTGTAGACCATCCCAAATCTGGGCCGTCCGTGGTCAT 45353 30 100.0 38 .............................. GGCACCTACGAGTGCCCCGGCTGCCCCACCATCGAAGA 45285 30 100.0 36 .............................. ACCCAGACAGGCACAGAGAGGGGAAGTACTCGTGCG 45219 30 100.0 36 .............................. AGTCGGTCTCTATCGAGGTCAGCAACATGCTCGTCA 45153 30 100.0 37 .............................. GACTACTCGACGCCGCCGGGGCCGCATCTCCAAGAAG 45086 30 100.0 38 .............................. CTCGACCGCCTCGCAACGAAGTGGGGCGTTCGGTCGGT 45018 30 100.0 40 .............................. AACGGCAAATCGGTAAGTGCAGACGAGCTATCGGTCAACA 44948 30 100.0 35 .............................. GCTCACCGACGCCGCGGCTCTCGCGGCCGGCACAC 44883 30 100.0 34 .............................. GACGAGAACCTCAACTTCGGCGGTCGGCAGATCC 44819 30 100.0 34 .............................. GTGAATCGAGGTTGCGGGCGGTGTGCGGACTGTT 44755 30 100.0 37 .............................. CTCGAAAAACAGGACGTAGCCGCCGGGGACTCCACGA 44688 30 100.0 36 .............................. TGAGTCGATTTTGCCGAGGTCGTTGGAGTCGGTCAC 44622 30 100.0 36 .............................. GAACCGTTGCGGACGGCGTTACATCCGCGACAGGGG 44556 30 100.0 38 .............................. GGCCGGTAGTCTGTACGGGGCACTGGCGAGCTTCGCGA 44488 30 100.0 37 .............................. TTAGTTGACTTACTGGCCGAACTGGTTGTTAACGGGA 44421 30 100.0 37 .............................. ACTGTGGGGAAGAAGCATGACTAAACGCAACAAAACT 44354 30 100.0 34 .............................. CACGTTGAGGTGTCTGCATCACGAATCTCCGCGG 44290 30 100.0 35 .............................. GACCAGCCGGCAGGGACGCTTTCGACGTGGACGCT 44225 30 100.0 33 .............................. AGCCGCTTGAGGACGAGCGCTCGCTCCCAGACA 44162 30 100.0 37 .............................. GGACTCATACGAGGGTCCGTACGTCGACGCCCTAGAG 44095 30 100.0 35 .............................. AGGCGACAGGCCCCGTTGGGTCAATCACAATCAAA 44030 30 100.0 35 .............................. ACCGACGTGATTTTCTCGTCGGGGAATATCGAAAT 43965 30 100.0 37 .............................. ACTGAGGTCGCTTGCAAGTACCATTATTGGATGAGTT 43898 30 100.0 36 .............................. ATGGTTAGGCCACGTTGAGGGTGAAGTCTTCTTCGT 43832 30 100.0 34 .............................. CGTGGTCCTCGAGACGGAGGACTATCGGACGCTC 43768 30 100.0 37 .............................. GATTGCGAATCGTTTGTCGTCGTTGTCAGCCATTATC 43701 30 96.7 34 ...................G.......... GGCACCTACGACCGCCGCTACAACGACGACCCGC 43637 30 80.0 0 .......G.......G...G..A..A..T. | ========== ====== ====== ====== ============================== ======================================== ================== 32 30 99.3 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : ACGCTCGAACGAACCGTCGAGCATCCGAAGCTCAACCGCAAAGTGAGCTATCAGTACCTGATGCGGCTCGAAGCGTACAAACTCAAAAAGCATCTGCTGACCGGAGAGGAGTACGAGCCCTTCGAACGGTGGTGGTGAAATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAACTTGGGCGACGCTATCTGACGCACGTTCAGAACTCCGTGCTCGAAGGCGAGATTTCCGAAGGTGACTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATCATCTACGAACTGTCCTCGGACACACTTCTCGACCGCTCGGTCTACGGCGACGACCCGACCGACGAGAAACGCTTCCTCTGACTTCCGTCGACCCCCCGGTCGGCTCGGGTTACTGACGGTCGACGGAACTTCTTTATCGTAGTCTTTCTTTAGAGGGCCTGTGTCCGTGATATCGGGCATG # Right flank : GAAAACTCGTCGGGACGAAAACACCCGAAAGAAACAGACTCGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAACTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGAAGCCCCTCGGCGTAAGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 55367-54607 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLL01000004.1 Haloferax alexandrinus JCM 10717 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 55366 37 100.0 36 ..................................... GACTCGGCACCCACGGCCCCGACAACGTCGCCACTT 55293 37 100.0 36 ..................................... AGCCCGAGGTCGAGGACCTCGTCGCGCGGCTCACCG 55220 37 100.0 35 ..................................... GAGGATAGAGATTTAGACGACGGGTATATCGGGAG 55148 37 100.0 36 ..................................... AACGCAAACGCGACTAACAGGGGCAGGATATACATC 55075 37 100.0 34 ..................................... AGCCGATTGCGTCCCCTGCTCGTGGATATTGTCT 55004 37 100.0 37 ..................................... AGTTCACAAGACTTGTCAATGGAGTCATCGAGAAAGT 54930 37 100.0 35 ..................................... AATATCTGTGCGGCGAAGATGCCTTTCATTGTACT 54858 37 100.0 33 ..................................... CGACGCTTACCGACGAGGACGACCGGATTTTAG 54788 37 100.0 36 ..................................... ATGTCCGAAGACGAGCGGATATGAGCTTTCTCTGCC 54715 37 100.0 35 ..................................... ACGCCGAGAAGCACGGCATGACTGCCGATGCTGAA 54643 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 35 GTCGCAGGGCAATAGAAACCCAGAACGGGATTGAAAC # Left flank : TGACGCACCCGTATTTCGAGTACCGTGTAAGTCGCCGCAAGGCGATCCGACAGCAGGTGATCCTTCTGCGGAAAGCGATTACGGGTGAGCTTGATGACTATCACGCGCTGGAGGTGTCGCGATGAGACTCGCAGTGACGTACGACGTCAGCGACGATACGAATCGTCGACGCGTCTACCGAACGCTGGAACGATACGGAGCGTGGCGACAGTACAGCGTTTTTGAACTCGACGTGTCGAAGAGCGAGCGGGTTGAACTCGAAGACGAACTTGAAAGCCACATTGAGCCGGCCGACGGAGATCGAGTTCGGCTATATCGGCTTTGCGAAACTTGCCAGGAGGCGACAACAGACCTCGGAAATGAGCCACCAGATGAACAATCGAACGTCATCTGACGTTGACCTTTTTCAAAGCCGTGTACAACAGGGGTCCACGAAAGTGGACTGCGCTATTATGGGTGGAGCAAGGTTTATACACCACGTCAAGCAAACTGCACCCCCT # Right flank : CGCTGTGGCCGAGCGAATCGAGGCCCCATTATCTTGTCCAGTAGAAGTCCACAACAGTTGGTTCGAAATCGCCGCTGACCACACCGCCGTGGTTCTATATGTGCCAATCTGAACGGCTGTGAGGAGTCCATGGATTTATTTCATCTACCTAATATCAAGGATGTACACTCTGTCCAGGTTTATCTCCGCTCGAGTTGGGTATACCACGGATTTAGTGAGGTAATGGCCTGAAAAAACTCGAATACACAGGTTGACTATTCTCGTGGATTTATTGATGAAACGCTTCAGATAATCTTCCCGCCATCTTCCTTTGCCGGGCCTTCCGCTCTTGCTCTCTCGACAGGTAGTTCCGAAGAACAACCTCCGTCGACGAACTCCCCTGGTCTTCTGCCACTCCTTCCAACTCCTCTAGAACCTCTCCAACTGCTTCCTGATACGCCGAGTACCAGAACCGCCGTCCCATCTTCGGCGTGGGCGTATCCCCATCAACAACCACGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGGCAATAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 2 65935-67995 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLL01000004.1 Haloferax alexandrinus JCM 10717 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 65935 37 100.0 34 ..................................... TTTCGAACTCCTGAAGAACGTCGTCAATCGTGTT 66006 37 100.0 36 ..................................... CGTCCATCTTCAGTTCCCTCTCGCAGACGACATGCT 66079 37 100.0 35 ..................................... AAAAGACTATACCGTCTCCGCGAGAAGGTTGAACC 66151 37 100.0 36 ..................................... TGAGCGGTGCCGTGAACGCATCAACACCGTGTTCTG 66224 37 100.0 34 ..................................... ATTACGCGTCCGACGTTCTTTGCCGGGTCGTCTT 66295 37 100.0 34 ..................................... AGAGCTACGACGATATCATCACGCGCATGATTGA 66366 37 100.0 34 ..................................... TTCCCCACGGCTTAGATAGCCATCCTCGACGAGC 66437 37 100.0 34 ..................................... TAGATGAGTTCGTCGGTGGCGTTATCCGAGTCGA 66508 37 100.0 36 ..................................... AGGACTTTGTGGATAGTTACATGTTCGAGAAAGTCG 66581 37 100.0 36 ..................................... CGGCAGGCGGCGCGCTCGTCGCTGGAGTGGCGACTA 66654 37 100.0 35 ..................................... GAGTTTACTGGCGAGGAGTGGCCGGGATTCGAGCA 66726 37 100.0 36 ..................................... CTTCCCGATGAGTGATAGATTGGAGGCACGAACGCA 66799 37 100.0 34 ..................................... GCCATCTGCTCGCCGTCCTTCGTGAATCGAACAA 66870 37 100.0 35 ..................................... CGAGTTTGAAGGATAGTTTAGACGCGAAGTTCCCC 66942 37 100.0 35 ..................................... ACGAGAGCCGTCGCAGAGGGCAATATCACGCAAAC 67014 37 100.0 36 ..................................... TGAACATGATTGTCATCGGTCACGACAAAGGCGACG 67087 37 100.0 37 ..................................... AGTTCGCGGAGCGGCTGGTGGCCGCGCACTTCGGCGT 67161 37 100.0 35 ..................................... GGTTGCGACTGGGTCGGCGACGAGACCGACGCCGT 67233 37 100.0 36 ..................................... AGCAGGAGTTCAGCAGAGACACCGACCTCGAAAACC 67306 37 100.0 36 ..................................... AATCAATCTCGCATTCAGTTAGCCCTTGATTTTGCG 67379 37 100.0 37 ..................................... GTTGCTGAAGTTCAAAGCCAACGTGGTCAACGCGCTC 67453 37 100.0 34 ..................................... TGAACTTCTCCTCGCAGAAGTGGCAGATAAACGC 67524 37 100.0 35 ..................................... ACCTCGTCATCTTCCTGAACGCGAAGTCCGACGAC 67596 37 100.0 37 ..................................... TCTCCGTTAATCTCGAGCGTCCGGGCCAGCATGGTGA 67670 37 100.0 35 ..................................... GTACTGGTCCTCCGCGAACGCCTGTTTCACGCCGC 67742 37 100.0 36 ..................................... ACGGGCGACAAGTACACGCTCGACGAGCTCCGCGAC 67815 37 100.0 34 ..................................... TGTCCGTAGTCATAACCGTAGAGCCGCCACGTAT 67886 37 100.0 36 ..................................... TCAGTTACTTTTGGGGGGCGACCTGCGGTCACGGTT 67959 37 94.6 0 .............................G.....C. | ========== ====== ====== ====== ===================================== ===================================== ================== 29 37 99.8 35 GTCGCGATGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : CTTGAAGCCGCCGAAGGAACGGTGGTACTGAACTTCGCAGGGGGTCCACGGGAAATTTTCCTCCCGCTGACCATCGCTGCAATTGCGCGGTCAGACATTGTCGATCTCGCACTCCAGTTCAGGGACATTGACGAAGAAATTGAAGAAATCACTCTCCCGAACCTGATGAGTCGCCCGTCCGACGCGACCCTCGACACACTCCGGTCCCTCGTCACTATCAACGGAAATACGACACTCCCTCAAATCGCCGACGAGACGGGGAAGTCGAGAAGTACTGTCGGACGACATCTTGATGCGCTGGAATCCGATGGTGCCGTCAAAACGTGGAAGGAAGGCAAAACCCGCCACGTCGAACCAACACTCGCCGGTCAGCTTCGTGTGTGAGTGTAACTCTTCATCGACCTTTTTCAAAGCTGTGTACAGCGGGGGTCCACGAACGACACCCGCGTTCTTGCTCCACCAGAGAAAGATATAGATGCTCTCGACGAATATACACCCCC # Right flank : CTCAAAGATCTCCGACTCGACGGCACCGATTGACTCGATCGCAACCACTAGATCGGGATACCCATTAAAGTGAATTTGTAACTTGCTAGCGTTCTACTCTAACTATGCTCCTGCAGCCCTGCTGAGTGTAACTTCTCTCAGTCGTAGTTGAGCAACTGATTTACGAGAGCTGTGAGTTCTGCTGTCACATCAACGGCCGCCGTCCATGGTCGAGGAAGCTGTGACTGACCAAATCGAGCACCTGCGACTGCCCCAGCGATGGCACCAATCGTATCCGCGTCACCACCGCGGTTGACCGCGGTTACAATCGCGTCCTCAAGCGTCGCTGCACCAAGTGCGTCGTGAAGTGCAGTCTGCAAGACACGACGTATCCAGGGGTTTTCAATGCGTCCGGAGTTCTCCACAAGCAATCGGTTCGAGCGCATCAGTAAGCGCCACAGGAGCATCACTACCAACGAAGTCAAGTGCATCACGTAGCGGTGTCTCAGCGTCTTCAAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGATGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //