Array 1 295761-294114 **** Predicted by CRISPRDetect 2.4 *** >NC_011529.1 Thermococcus onnurineus NA1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 295760 30 100.0 38 .............................. TTCGCGGCGAGTTCAGGGGCCTTTCCCTTTAGCATCTC 295692 30 100.0 36 .............................. ACGGCTCACCACCGCCTTAAACTCCGACGCCATCCT 295626 30 100.0 36 .............................. GACCCTCGAAAGCGAAAGCGAGGACGACGAAGGGGT 295560 30 100.0 37 .............................. TCGCGGCTGCGTTCGGCCTTGTCCTGGCATATCTCGC 295493 30 100.0 38 .............................. CTGTTTGTGCAGGGTACGGTGAAAGACCTGCTGGACAG 295425 30 100.0 37 .............................. GAGGGAGAGATAGTCCTGGATCTGGAGACTACCGGCC 295358 30 100.0 37 .............................. CTAGAACCAGGGCAGCCCCAGCAGCCCCAATAAGCAG 295291 30 100.0 37 .............................. TATTCTGTGTTTATAAACTTTGCAGGAATACTAGCAT 295224 30 100.0 37 .............................. AAGAGGAAGGACCCGAAGGCGGTCGCGGGTGAGTTCT 295157 30 100.0 37 .............................. AGCGCGAGGCCCGGCTCAAGAAGTGGGAGCAGGAACT 295090 30 100.0 36 .............................. TATTGGGCCATAGACGTATCGGGCGGCTTCCAGCGC 295024 30 100.0 38 .............................. GTAACTATCGAAAAAGCGTACTATGGAGGTGAGGCCCG 294956 30 100.0 38 .............................. GAATTCCACGGCAAAGCCATCCCTGCGGTCGTAGTAGC 294888 30 100.0 38 .............................. AAGACTTAATGACCGCCTCGTCGGCGAGCTCGACCTCA 294820 30 100.0 37 .............................. TACTCATTAAGGGCCTCTTCAAGAACACCACGAACGG 294753 30 100.0 37 .............................. TGAATACTACAATCAACCCATAATGGAGATTTCCAAG 294686 30 100.0 39 .............................. ATGTCGGCCATGAGCTCGGCGAATCCATCAACCGAGTGC 294617 30 100.0 35 .............................. ACGACATCGGGGCTGCTGACCTGACCGACATCGGG 294552 30 100.0 39 .............................. CCACAAAAAAATGACCGAAGGTGTTCATGGCTCTCCCTC 294483 30 100.0 38 .............................. TTTATACGCCCTTATGTCGTCGAATGGGGCGGCGATAT 294415 30 100.0 38 .............................. TACCCCTAACATCTCCATGTCTGTAGTTATCTCTTCAA 294347 30 100.0 37 .............................. AAAAAGCAAAAAGATGGAGGTGGATGGAAATGTTTGG 294280 30 100.0 37 .............................. TTACTGACTTCCACTTTATACTTTGCCTCGTAGCCTT 294213 30 100.0 38 .............................. GGGGATACTCACCTTCCCAAGTGTTGCTCCAACCAATG 294145 30 93.3 0 .........................C...G | G,T [294116,294118] ========== ====== ====== ====== ============================== ======================================= ================== 25 30 99.7 37 GTTGCAATAAGACTCTAGGAGAATTGAAAC # Left flank : ACTGAATAAGGTCTTTTAGGGATTTTGGAAGGCAGTATCAAGTTTGGAGGGGCACATTTTGGAACTGGCGTACTCTGAGGATTTAAAAGGAAAAACATGGCACTGTCGTCGGATGGGAAGTCTTTAGTAACATAAAGTAATTATCAAACTTAATGTTGCATCAAAGATATTTGATGTAACGAAATTTTTCTGAAAGTTAAGATGAAACTTCATGGGCCCCCAAAAAGTTAGCAACCTGTTTAAACTCGGCGTTTTTATAACCCAAAGGGTCCAATTGCTCGTTAAGTCAATCACAGCGATCTCTATCCTCCGGAACTTGCAAGGATTACCACACACAACACCAGAAAGACGTCTTGGAGCTTTCTATTCTCCAATTGATCATTTTAATCCGGAGATTTCCAAGGCCACATAGATACGCATTAGCAGACCTCCGGAGAAAGGCTTATAAAAACTAAGCTCTCATAATCTTTTGTTAGGCAGAAGAAGGAAAAAGCCGCCCT # Right flank : TTCTTCTGGGAAGGAATTAATTACATAATTCTACAATAAACCAATAATCTAATTGTGCAAAGATAGATCTGGAGGGAAATCGCAGCAAATTAGCGTTAAGTGGAAGGCACTATGAAACCCAAAGAAACAGAAAAGGAACAAAATCGCCCTCACTCGAGGGCAGCCAAAAGCTTCTCCATGAACATCTTCTCCGGGTAAGCTCCCTCGAACTGAACCTTGTCCTCGCCGTCCACCTGGATGACGATCTTCGGGACGGCCATGACGCTGTACTGGTCAGCCCATTCCGGATACTCGATGGCCTCAACCATGTCTCCCCTGATCTTGCCCTTGCCGGCGTTGGTGTTCTCGATGGCGAACTTGTGGGCCATCCTGACCGCGAGCGGGCAGTATGGGCAGGTCGGGGTGACGAAGACGAGTATCCTGACGTCCCTGTCGACCTTGGCAAGCTCCTCCTTCGTATCAGGCATGAGGTCAGTCTGGGCGTTGCTGACATCGACGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 728608-730178 **** Predicted by CRISPRDetect 2.4 *** >NC_011529.1 Thermococcus onnurineus NA1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 728608 30 100.0 37 .............................. GCCTTGGCGTGCTCGCCGCTCTGGGCTTCGTCGTTTT 728675 30 100.0 37 .............................. GCCGGATTGAGAACTCCCCTCCCGGGTGGCTAATGGG 728742 30 100.0 38 .............................. GAGGCCTAAAATATCAGCTCATAGACCCGGAGAACCTC 728810 30 100.0 37 .............................. CTATTTTTACCTGCATCGGCTTCATTCCTGCCGGTAA 728877 30 100.0 37 .............................. TTCGTCGAGAAGGGCCTCGAGCTTTCGCTTCATTTCA 728944 30 100.0 36 .............................. TTATGAACGCTGCACCCAGGCCAGCCAGGAAATCAA 729010 30 100.0 36 .............................. GCGTTTTTCATAGCACTATCACCGACTATTTATTGA 729076 30 100.0 37 .............................. TCTTGGCAATGACTACTACGCTGGCCGCTCTGCGAGC 729143 30 100.0 37 .............................. ATAGAAAACTTAGGGTTATCGGGTATGTGAGGGTTTC 729210 30 100.0 37 .............................. TACCGCGGCCGAGGCCTTCGACGCGGCCCTCGCTAAC 729277 30 100.0 38 .............................. ACTACAAGTTCTACATCGCGCCGAACCCTGGATACTTT 729345 30 100.0 36 .............................. ACGAGCTGAACGTCCAGGTTCTCCAGGGCGACGCAG 729411 30 100.0 37 .............................. AGTTGATGAACATCTTTGCTACATCATATTCGTTGAA 729478 30 100.0 38 .............................. CCGTGCGTGGTGGACACGATTTCAGAGCTCCTCAACGA 729546 30 100.0 38 .............................. AAGGCCCACCCAAGGACCCCAGCCCCGACCAGGAACGA 729614 30 100.0 36 .............................. AACATAGCCAAACGTCCTTCCTCATCAACGACAGGA 729680 30 100.0 37 .............................. ATGACTTCGCGGACATCAAGCTCAAAGAGCTTCATGG 729747 30 100.0 38 .............................. TTCTACGAAGTCAATGTTCAGCTTCTTGTTCCTTGTCG 729815 30 100.0 36 .............................. TCGGAGAAGAGCACGGTCAGCTTGGCGTAGAGGTAG 729881 30 100.0 37 .............................. TCCACTCATCCGGCCACAGGCGCTCATTCTCTTTAAT 729948 30 100.0 38 .............................. GTAATCAAGGCCCTTCCTGACCCATTCCTCCACTTCCT 730016 30 100.0 37 .............................. ATCCTATCCGAGTTCGAGCCACTCAGATAAGTGCGGT 730083 30 100.0 36 .............................. GAGTGTCTGCCGCTTCAAGCAACACATCATACCTGC 730149 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.9 37 GTTTCAATAAGACTCTAAGAGAATTGAAAG # Left flank : GGGAGCTTATAATCGTTGCCCGAAGGGTTTTCGGAGCAGATTCATACTGCGGCATCTTTGGCCCTCTCACTTCAACGTCCAGAGCTTTGGGAAAGCGGGACGGTGAAGTGTTTGGAAGTCTTTAGTAACGCCTGGTAATTATCGGACTTTTTGTTACGATTTTCATCTTGGAATGTAACGAAATTTTTTCAGAGTGTTGAGAAGAGCATGATGCGACGGTCTCCAGCCTATTTTCTAAGGGAAACTGCTCTTTTTGACTGTTGCATGGTTTTGAAGCCTGGAAATTAATTTTTCTCTTTTCTTTGGGCTTTGGAAGTCTCGTAAACATTCTTGTTCACAGGATTTTTTAAGCTGTGCAGGCCTGAAATTCTTAGAGGAGGTTCTTGAAAGATCTCAATGAAAGAATCCCCATAGCGCTGAAACTACCCCTCCGCAGAAAAACTTATAAGATTTAAGGCATTTTATACCCCTATAAGACGAAATAAGGAAAAAACTGCCCT # Right flank : TAACGATGAAGGCGGACTGCTCGGGGTTTTCGCGAGGTAGTTTCAACAAGAAATAAGAAACCAAAAAGCGAAAAGTGCTTTTACTCCATCCTCCTCCCGAGCAAGCGGTTTATTCTCGCCTTTATGCCTCTGTTGCCCTTCACAAGCATAACCGTCTTCGGGCATTTGCTCGCTACCCTTTCAGGTACTTCCCCAAAGAGTAGCCTCTTGAAGAGGCCCTCCCTCGTTGCCCCCATGACCACGAGGTCGTGCTTCCTGCACTCATCAAGTATCGCATTTACCGCGTCGCTTTTGTTCACTATCTTCAGCTCCGCGTTTTCGATCCTCTCCATTACCGGCTTCAACTGTGCCCTTACCTTCTCTTCCAGCTTGCCGGTGGTGTTGACGCTGAGCACAGTAACTCTTGCACCGTACGCATCGGCGAGGATCGAGACGAGCTCCGCACTGATGGCGCTATGCTTTCCTCCCCTCGTCGGAAAGAGAATGCTCTTAATTTCTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 818816-819903 **** Predicted by CRISPRDetect 2.4 *** >NC_011529.1 Thermococcus onnurineus NA1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 818816 29 100.0 39 ............................. GCCCACGACTTTTTAGCGGCGACCGCCGCGAGTTCTTCC 818884 29 100.0 35 ............................. GAGGGGCCGGGCCTCAAAATCCCCCAAAGTCCCCC 818948 29 100.0 37 ............................. TGGCCCGAAACCCTTCCGGGAGAGTGAGGACCCTCGA 819014 29 100.0 39 ............................. TGTGGGTTTCACCGGCGAGGAATCCGAGAGAGAATGTAA 819082 29 100.0 37 ............................. ATGAAGAGGGAAGAGTTCATCAAAACCCTCCTTGACG 819148 29 100.0 36 ............................. TTGAGTTTTCCCGAGCTCGACGCGGTTATTACGCTG 819213 29 100.0 36 ............................. TTGGTGGCCTTCTGGTTCATTGGGCGCTGACGAACA 819278 29 100.0 37 ............................. CCGTTTCCACCGAGACCGGCCATCCAACCGAACATTT 819344 29 100.0 36 ............................. CTTAGGTCTCTGAAAAGACTCCTTTCGCTCTTATAG 819409 29 100.0 40 ............................. ATCAGTCGCTCCGGTAAGCTGCTTGATTATTGTGTTGTCC 819478 29 100.0 37 ............................. CTCGACCTTACCCCGCGTCCAGAACTGAATACAAAAC 819544 29 100.0 37 ............................. CTCGCGAGGTAGTAGAACCCGCCTCTCGCCCTCTCGA 819610 29 100.0 39 ............................. CACCCTGAAGGGGGAACAACTCACGGAGGAGCAATAGAA 819678 29 100.0 37 ............................. CCTGGTAAACCTTCAACAAACTCATCAACGGCCTCCA 819744 29 100.0 37 ............................. GTCAAACCACCCAAAATCGCTCTCATCTCCAACCGAC 819810 29 100.0 37 ............................. TTAATTCTGTATTGCGTTGCCAATGTTCCGTAAATGT 819876 28 89.7 0 ...T....G..............-..... | ========== ====== ====== ====== ============================= ======================================== ================== 17 29 99.4 37 GTTCCAGTAGGACAGAATTGTGTGGAAAG # Left flank : AGAAGTGAGAGGCTGTCGCCCTGAAATTATACCCTATCATATTTTATGCCCCGTTTTTGGCGCTTTGAGGGTTTTACAGGGACTACATCCCCGGAAAAGGGCAGACAACCCCGTGGAATTCAGAAAGCATTACTTACAAAACATAACAAGAAGTTACATTATATGCCACATAGTGTAACCAATTTCCGGGCGGAATGTCAATCAAGCCCGCTCGACGGCCGAAAAGTACCGATCCCCGATATAATTGAACGTTTTTGACAGTCTTGCCGCATTCGGGCAGACACTCCAAAATACAGGCCGCTTCGGGCTCTGGAACTCTCATGCACTGCAAAGTACATTGAGAATTTCGGCCCCAGAGAAAAGGCACTCTCCCCAGAAAAGGCCGAAAAAGCGGCAGATTCCAGGGCTTTCAGGGGTCCCACAATAAGGCTTTCCAAAAACACTTAAATATCCGGGGTTACAGAGTATTCTGTTAGAAAAACAGGGTGAAAAAGTGTCCT # Right flank : GCCCCATTATTGCCCCTTGTTTCCGTAGAACGGCTCGTATGGCAAGAGCGGGAGCTAACGAACGAGCTGAAAGCCTGACCGGAACGTTTCTTTAGAGTCAGCGGATATTCAAAAAGGAATAAAATCTGATTTCCACGGGATTAGAAGAAAAAGGCATTCAACAATAAGAGTTATAAAGATAGAGCATGCACGTTAAAGACGGTAACCTTCCGGGGAGGATAGATTATGCGCATTAAGGTCAGTTTTTATTCCCCTGATGGTGGGTTTATTTATCCCAACAAGCACGCCGTTCAGGGGTTCATCTACAACATGCTGAAGGGCACGGAGTACGGGGAAAACCACGACGCACCGAGGTTCAAGTTCTTTACATTCTCGGACTTTTTCATAGACTCCCTGGGAAGGCCGACCTTCTTGGTCTCCTCCCCGGACGAGGGCTTCATCAGGGCACTCCACTCCAGCCTGAAGGACAGGGTCAGGGTATACATAGGGACGCAGGAGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGTAGGACAGAATTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 828033-828819 **** Predicted by CRISPRDetect 2.4 *** >NC_011529.1 Thermococcus onnurineus NA1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================ ================== 828033 27 92.6 40 .....C..........G.......... ATGGCTCCGGCCCGCCGTACTGGGGGAAGAACCTGTAAAT 828100 27 96.3 39 ........G.................. GCTTGACGTAGATGGTCGTGGTGTTCGTGCTCAGGTCGA 828166 27 100.0 38 ........................... ACTGTCCGGTGCCCGCCCAAACTGTGACATGGTGCTCG 828231 27 100.0 39 ........................... ACTAATGCGGCGACCTCTAACCTAACGAAGCCCGGTGAA 828297 27 100.0 47 ........................... ACAGATCCTCGACCAGGTCGCTGATGAGCTTCGGGCCGGACTCCAGG 828371 27 100.0 41 ........................... ATGTCTCCTGCTTTTGCTCTTCGCTGAGCCACTCGCTTTTG 828439 27 96.3 41 ........G.................. ACACGTATTCTGTCAACAGCCGATACGTTACTACTATATAC G [828447] 828508 27 92.6 39 ........G.....A............ ACTCGATCGTGTCTGTGTTATAGTCAGCGAGGTAGTCAA G [828516] 828575 27 88.9 48 C...T...G.................. GTACCTTGCCGTTATTGTTCCGTAAGGGTCATTTTTCAACGCCTTAAT G,G [828582,828598] 828652 27 85.2 42 .....C....A.....G.......A.. ACAACTGAATCTTGTCGGCGCTATACCAGTAGTGGCCCTGAT 828721 27 81.5 45 A....C....A...T......A..... ACAGCTAGCTCGGCAGGCTTGCCTCATCGCCACAGTAGAACGCCC 828793 27 81.5 0 .....T....A..GT...C........ | ========== ====== ====== ====== =========================== ================================================ ================== 12 27 92.9 42 GTTTCAGTAGGACAGAATTGTGTGGAA # Left flank : TGGCAGTGGCTTTGGAACGCTCGTCAAGCTCCTCTTCCAAGCGAGGATAACCAGGGGCCTGCTTGTCGAAGAACCCTACTCCATCGAGAAGCTTTACAGCGTCTCGGATAGGCTCTTCCGAGGAAGCACCCTGCAGAGGGTAAGAGTGGAGCTCGGTAAGATTGAGGATAAAGCAATAAAATACGCAAGGAAAGGGGCATTTCCGCGGGACATTCCCCTGCGGGATTTCCTTGGGTTTGACGCCGCCAACCGGGAGGTGAGTCCAAGGAACGTGCTCGCCCACGCCGGCCTCGAAGCGAACGTCGTCGAAGTATCGATGGAGGCCTGGGAGCCCAAACGGCCCGAGGAAGAGGCAGGAAGGCACACTCACCTGAAGTACACACCGGTGGGACTCAAAAAGGTGGAGGACATCGTAAGCAGGGCGCTGAAGGAGAGCTAAGGTGTGTTACTAACTATGGGCTCACTGGGTGTCAGCAAACCAGACAGGATGTCCCTGACGG # Right flank : AACTCACTGCTTTAAGCCGGTCAGCCTTACGAGCGGGGCCATAAAGCTGCTCTCCGAGAAAAGTCCCTGTAACAGGGAATGGAAAAGAACGGCCCTAGAGCATAATCTAAAACTCAAAGAGACCTCAGTCCTCAAGCCAGATCTCAAGCCTCTGCTTGCCCTTTCCGAGGCTGGAGCGCTTGAGCTTCTTGAGGTGTCCTATCTCCTTTATGTCCTTCACGTGCGTTCCGCCACAAGGGATGACCTCGAAGTCCCTTATCTGAGTGTATCTCGTCTCTCCTTCCCACCATATCTTCATCTCGCCGCCTTCGTCGACGTATTTGTTGAACAGCTCTATGATCTTCTCCTTGTACTGGTTAACGTTTTCCGGATAGAGGATGTCGTACCTACCTTTCTCAGCGCTCATCCCACTGCCATAGAGCTCCCAGTTGCCTTCCCCAAGAACCTCATTGAGGACGTGCTCGAGGAGGTGCATGGCCGAGTGGATGCGCATGAGCTTG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTAGGACAGAATTGTGTGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 997977-994457 **** Predicted by CRISPRDetect 2.4 *** >NC_011529.1 Thermococcus onnurineus NA1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================== ================== 997976 30 100.0 37 .............................. CAGATTGCGCAGGCCGGCCAACAGCTCGTGAACGGGA 997909 30 100.0 36 .............................. GTCGCTTCGCGGAGTTCAGCCCTCGGCACTTTGCCA 997843 30 100.0 38 .............................. TTGATTTTCTTAGAGGTTTTCCTTTTTGCCATCCTCAC 997775 30 100.0 37 .............................. TGAATTTGAGGAAACTCAGCCAGAGCCTCTGATTGAG 997708 30 100.0 36 .............................. GAGTTTTGGAAGATGCGCTTGGCCAAACTAATAACT 997642 30 100.0 38 .............................. TTGGTAACATTGCAGGCTCATTCTTCGTTGTCAGGGGG 997574 30 100.0 37 .............................. ATGGCTAGTACAAGAGCTATGGCAATGCCAAGCGTTG 997507 30 100.0 38 .............................. GAGTATGTCGGAGTACAGCACACGGGCAGCTTTGATTT 997439 30 100.0 38 .............................. CCGTCCTGACCCAGGACGAGATTCACATGATCCACACC 997371 30 100.0 38 .............................. CACATCAACTTCATTGATAAGGCCGTCAGGACGCTTAT 997303 30 100.0 38 .............................. AAGGATTGAGGCCGGCGATATTCAGCAGGATGGCAACC 997235 30 100.0 36 .............................. AACGAGCTCCACATTTTGGTCACGCCTGACGGTGAG 997169 30 100.0 37 .............................. AGAAGGATGTTGCCGAAAAAGAACTTCATGAAGCCGA 997102 30 100.0 37 .............................. AAATCATGCTGGCCTGGAGTGGAAACCTGACGCTCAG 997035 30 100.0 39 .............................. TCGTTTTCTCTCAGCTCAGCGGCCAGGCCAAGACCATAG 996966 30 100.0 37 .............................. GCCATATTCAACGAGGTCTCTTGCGAGTTGTATGCAG 996899 30 100.0 37 .............................. CTCGTTGGTTACATCATCTACCGCAAGGCCGTTCCGA 996832 30 100.0 38 .............................. AGGTTCAGTACTATCATAAGTATTGCAAGGTTTCTGAA 996764 30 100.0 38 .............................. GTGTTCTCAGGGCTTATCGCGTCGGCCTGAGCCTTCAT 996696 30 100.0 38 .............................. TTCCTGAGCAGGGGCACTGAGCCGTGGCTGATGCTCAT 996628 30 100.0 36 .............................. ACAGTTTACATCGGCTTCGAGGGTTTCATAGTCTCC 996562 30 100.0 36 .............................. AAAGAAGATCAAGAGCTGGTTTAAGCACTACTGCAT 996496 30 100.0 36 .............................. ACGTCAGCGTCTATTTTTACTACCAGGGCGACGTGG 996430 30 100.0 35 .............................. AGAAGGACAGCCTCAAGATCGAGAAGGAAGTCAAG 996365 30 100.0 38 .............................. TTGGCAATACCGTCACGGACGACGCGCTTTATCTCTTT 996297 30 100.0 40 .............................. ACTAATTCCCACCCATCTCTTTAGAGTCTCTGCTCTGTTT 996227 30 100.0 38 .............................. AACCAGAGCTTTGCCGCAGCAGTCTTGGCAGGGTGCCA 996159 30 100.0 38 .............................. TCATAAAATATGGGCTCAATACAAAAGTGATTCGGCTT 996091 30 100.0 36 .............................. ACAGTGAACACAACGCTCTCGCCCGTCTCAGCTGCC 996025 30 100.0 37 .............................. TAGTATTGAACATCAGCAGCCCTCACCGGCACGGCAA 995958 30 100.0 36 .............................. GGGCAACATCACCCCTGAACAGGTCGCAAACGCGAA 995892 30 100.0 38 .............................. AGAGAACAAGACACAAGTAATCGAAACCGCCGTTTTAT 995824 30 100.0 37 .............................. AGATACCAGAACGCAAAAGCAAACAGAGTCGCCCAAA 995757 30 100.0 36 .............................. ACATTGATAGGATAATCGATAAGATTGAGTGGGAGA 995691 30 100.0 36 .............................. AAGGGTCTCGGAGAATACCCTCCCCGAGCCCTTTAT 995625 30 100.0 38 .............................. CCATCTAAAAAGAGCAGTGGAGTTTATCATAGCAGTAG 995557 30 100.0 37 .............................. ACGGACGGGAACAACACGTTCCTACTGCTTGAGGTAG 995490 30 96.7 36 ....T......................... AGGGTGTGGTCGTGACGTATGAGGTCGAGCTCGCCG 995424 30 100.0 37 .............................. AATTTTACCTTGACGTTGTTTGAAGAGGGGCCAATGG 995357 30 100.0 36 .............................. TAGAACTCGGGCCATTGACTCGGTTGATAGATTCGT 995291 30 100.0 37 .............................. TTCTTATCATAAACATGATACTTGCCATCTTCCTCCT 995224 30 100.0 39 .............................. CATAGAGGGTCGTTGAGTAGGTGTCAGCCCTGATGCCGG 995155 30 96.7 39 .............................G CGAGCACGGCCAGATGAGCCAGACCCAGCAGGCGATCTG 995086 30 100.0 16 .............................. GGGCGCATGTGTTGGA Deletion [995041] 995040 30 90.0 38 ........TC.T.................. GATGATGAATCCGGAGACAAAAGCCACCGTCGAAGCGA AA,C,C [995022,995032,995035] 994968 30 100.0 38 .............................. CCTCCTCCGCACGTTCCGGGCCGCGATAAAGGAGTGCA 994900 30 100.0 52 .............................. TTTATAAGTGTATGAAAACGACAGGCTGACAACATCGGTGTTGCAATAAGAC 994818 30 90.0 38 TC.A.......................... CTGCAACCCTGTCTATGATGTCATCGTCCATGTTGAGC 994750 30 100.0 37 .............................. TCATCGTAGCTTGTGATGTAGGCGACCGTGGCAAGAA 994683 30 100.0 35 .............................. GAAACTCGTAGCTCCCGCTTATCGGGATTTCAAGG 994618 30 96.7 35 .............................G TAATCGTTGCAAAGCTCTGGTGGAACCACCCACAG 994553 30 100.0 37 .............................. CAAATTCCAACCGCCGAAGCTAGTGCCCCATTTCTTA 994486 30 90.0 0 ............T...........C....T | ========== ====== ====== ====== ============================== ==================================================== ================== 53 30 99.2 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : GTAGAAACAACTAAACGCCTTCTTTTAGATTGCATCTCGTTCATATCCCTGTTTTTCTTGAATTTTCTGTTAATCGTTTCAGAATTTAAAAAAGAACTCCGTTTGACCCATTGGAAGTCTTTAATAACAGTTTGTGATAGTGTTACTTTGAGTTATAAAATTTCAAGTTAATTGTAACGAAAAATTTTAGAGATCTGGGAATTGACGTGTAAGGTGCCCTCAATTCTGTCGATTCCTGCCCTGATATGTCTATTATCGGATTGGACTTGTTTTTTGCTGTTGGAGATGATAAAAAGGCTGCTCCGGGCTTTGGAACTCTCCAGCGCTGTTAATGGGTTCTCTGGAAAAAACGTCGAGAGGGTCTTGTCCCTTGTGTTCAGTTTGCATATCCATTAAAAAGCGGACAGCACATTGTCGTTTAAACTCCCCTCCGCAGAAAGACTTAAATATTTCCAGCTTTCTTAATTCTTTCTGAGGCAAAAGGGGGTAAAAGCCGCCCT # Right flank : TACAAAAGCTCTCCAAAAAATAAATCCTCCTTCGTCCCCCCAGCCTTCCTGAAGACCTTCTCGCTCCAGCTTACGTTTCCAACGCTTCTCGGCCAGTGGGCATCGCTGGCAAAGGTGAGCTTTATACCTCTTTTTATGCACGCCCTGATGAAGTCCAGTTCGGGGACTTTATAACGTGAGCTTATCTCGAAGGCCTTTCCATTCGCTTCGGCCAGCTCTAGTATCTCCCTCAGGCCCTCCTCGCTTGGATAGCCTGTGTAGGGGAAGCTCGCCCCGAAGTGGCCGATTATGTCAACGTTCTCGTCTTGGAGGGCGAGCTTAACGAGCTCGACGTGTTCCTCCGGCGTCTCCACCCACAGGTGAACGCTTGCTATCACGTAATCAAGCTTCTTGGCTATGTCCGTGGTTATATCGACTCCCCCGTGCATTATATTGGCCTCCACTCCGGCTAAAACGACGAGCTCGGCACTTTCGCTCCACTGGCGTATCTCTCTGACGTA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //