Array 1 92066-93133 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZDA01000001.1 Escherichia coli strain URMC_186 NODE_1_length_207889_cov_24.089776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92066 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 92127 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 92188 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 92249 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 92310 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 92371 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 92432 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 92493 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 92554 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 92615 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 92677 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 92738 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 92799 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 92860 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 92921 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 92982 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 93043 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 93105 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118680-119562 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZDA01000001.1 Escherichia coli strain URMC_186 NODE_1_length_207889_cov_24.089776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118680 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 118741 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 118802 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 118863 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 118924 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 118985 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 119046 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 119107 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 119168 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 119229 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 119290 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 119351 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 119412 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 119474 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 119535 28 72.4 0 ..A........C..T..-..T.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //