Array 1 1021192-1016404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024811.1 Halomonas alkaliphila strain X3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1021191 29 100.0 32 ............................. ACCAGCGCCGCCGCTATTCGTTACCAGATATG 1021130 29 100.0 32 ............................. CGCATCGAGATCATTGAGGACTTGATTACTGA 1021069 29 100.0 32 ............................. GTATCTTTTTACGAAAGCACTGGCAGGGAGGT 1021008 29 100.0 32 ............................. CCATCATTAACGACGATCTAAGCGCGTTTACC 1020947 29 100.0 32 ............................. ATACATGGGTTGGAGAGATCGGAATTGATATT 1020886 29 100.0 32 ............................. CTCCCGGATCTCGTCCGCGGTCGGGGGTTCCC 1020825 29 100.0 32 ............................. AAACAGGTTCGTGTGATCGGTGGCTTGCTCAA 1020764 29 100.0 32 ............................. GTAGAGTCCAGGTTCTCCAGCTATTGACGGAG 1020703 29 100.0 32 ............................. AAAATATATGATGCAAGTAATATTCTCGGCAC 1020642 29 100.0 32 ............................. CCCCCGCTAATCATAACGGGGCCAGAGTAGAT 1020581 29 100.0 32 ............................. CAATTGATTACCCTTGATAATGACAATGAAAA 1020520 29 100.0 32 ............................. GCGAGTGGCTAGGCCCGTTCAATGCTCAAAAA 1020459 29 100.0 32 ............................. TGATGAGTAAGGAAATAACCCTATTCCCAGAC 1020398 29 100.0 32 ............................. CTTGCCGTGCTGAATGATGTGAAACTCAATCA 1020337 29 100.0 32 ............................. CGCCGCCTAGCAAAGCAGATCATCCCGCTATT 1020276 29 100.0 32 ............................. CAAATGCTGACCGCGCCGAGAATGCGCGAGGG 1020215 29 100.0 32 ............................. GCTTGCTGGTTAGGCGTGGATCTCGCCAGTAA 1020154 29 100.0 33 ............................. CCGAACAGCAGTTTCAGCAGTTCCGACAAGCCC 1020092 29 100.0 32 ............................. TACCCGTCATTTAGTGCCCCTAGACCTTTGCC 1020031 29 100.0 32 ............................. ACGTTTACCGTGACTTCGATAGCCAGACCAAG 1019970 29 100.0 32 ............................. GCGTTCGATAGCCAAAACCTAAGGAATCACCG 1019909 29 100.0 32 ............................. ATCAACGTGAAACGCGCTTCACGGCAGAGCAG 1019848 29 100.0 32 ............................. GAAAATCTTAGTTGGGCAGGATTCGGCCAGTA 1019787 29 100.0 32 ............................. CTAAAAAATATAAATGTTGCTCGCTTGAATGC 1019726 29 100.0 32 ............................. CGCGCCGGGCGGGCGACCTGCAAACGGATATT 1019665 29 100.0 32 ............................. GAACTGCTCAACGTGTTTGGCATCACGCAGGA 1019604 29 100.0 32 ............................. GCACCGAAAGGCGCGGATCATCCGCTGAATGG 1019543 29 100.0 32 ............................. CTTGCCTCCAAATTGCCCGCAGTGCTGACAGG 1019482 29 100.0 32 ............................. CCCAGCAAGGGGATGATTCGCGTGCTGTGCTA 1019421 29 100.0 32 ............................. GAGAGTGAGAAATGATTTATGCGATTAACAGG 1019360 29 100.0 32 ............................. CAGCGCGCAGACGCCGCCCTAGCCAAAGCCCG 1019299 29 100.0 32 ............................. ACCCCGAGACTGGCGTGTTGCTGCGCTGCCGC 1019238 29 100.0 32 ............................. TCACAGGACGCTAATGGTGAATGGTGGTGGCA 1019177 29 100.0 32 ............................. CGCTTTACCGTCTCCCATTTTCGGGTTGCTGC 1019116 29 100.0 32 ............................. ATCAGAATCAATTTCGCTACGGGCTTCCAGCA 1019055 29 100.0 32 ............................. GTCGTTGCCAGTCGCCCTAAGCCGTTTTCGTC 1018994 29 100.0 32 ............................. GCCGCGCCCACCATACCCATCACATCACCGCG 1018933 29 100.0 32 ............................. CCGCAAGGCCAACGTAAAAGCCACGGACGCTA 1018872 29 100.0 32 ............................. TCGTCAGGCAGGCGATAGATCAGGTGGGCTTG 1018811 29 100.0 32 ............................. GATCTGCTCAATAGTGAGCGGTTGGCCGTCTT 1018750 29 100.0 32 ............................. CCGCATGAGCAATCAAGCCACGAAATTACTAT 1018689 29 100.0 32 ............................. CACGAAGCTGCGTAAAGAGATTGTAGCTAAGT 1018628 29 100.0 32 ............................. GGAGCTAATGGCGCTCCATGAGCGCGGCGAGT 1018567 29 100.0 32 ............................. GGTAGCGCTATGGTGTGCAGGCGTCAATTGCC 1018506 29 100.0 32 ............................. TCTCGAATACGGTATGTGTCTGCACACCGTGT 1018445 29 100.0 32 ............................. CGGTGTTACGATTGACGGGAGAGTTCAACCCT 1018384 29 100.0 32 ............................. CTTAACCTCACATGCCGCTTTTTTAGGCAAAG 1018323 29 100.0 32 ............................. TGCTGATCAATAATGGCCTGCTGGCCAAGCAG 1018262 29 100.0 32 ............................. GTCGGAAATTTATCCGATGCAGGGTCGGATAT 1018201 29 100.0 32 ............................. GCAGATATTATTGGTTATGGCGGTGCGGCTGG 1018140 29 100.0 32 ............................. CCATCCTGTGCTGATCATAATCTAGTCGAGCA 1018079 29 100.0 32 ............................. GTCGAGGATAACGGCGAGGACTCCGATTACGT 1018018 29 100.0 32 ............................. TCAGCGATCAGACCCTGACGGCACAGATATAT 1017957 29 100.0 32 ............................. GAGATAGCGGCTAACATAGAGCCGCGTCGCTC 1017896 29 100.0 32 ............................. CAGATCAGGGATAAGCGCATCGAGATTATCGA 1017835 29 100.0 32 ............................. ATTGACGAGAGCTGGGAGGAGTACGAGGCGGA 1017774 29 100.0 32 ............................. CTGCTCTACCAGCGCTTTATCAAACGGCAGCT 1017713 29 100.0 32 ............................. CGGTGGAAAGCGAGGAAGCCGGTTTGATCGAA 1017652 29 100.0 32 ............................. TGACCTTTCTTCTTCGGTAGTGGTCGGCGGGA 1017591 29 100.0 32 ............................. AAAGGAAGCCATTTTATGAAATTGAAAATTGT 1017530 29 100.0 32 ............................. CTCATCGTCATCCTTCGCCTTGATCAATCCGT 1017469 29 100.0 32 ............................. GCGTGGCTAGGTGAGCGTGTTGTTGACCGCTT 1017408 29 100.0 32 ............................. ACGGTTAGCCGCCTGGAATCTATGCGCCGTGG 1017347 29 100.0 32 ............................. GCGTGGCTAGGTGAGCGTGTTGTTGACCGCTT 1017286 29 100.0 32 ............................. CAGACGATACGAGCGCGTGTTTTGCCTGCGCA 1017225 29 100.0 32 ............................. CGAGGATCAGCTTGATCTTTTCGGGGAGGTCG 1017164 29 100.0 32 ............................. TAATCGACTTCCTTGCCTGCCCGCTTAATCTT 1017103 29 96.6 32 ............................A GTAGAGCTAGACACCGCACGTGGCGTGATTGT 1017042 29 100.0 32 ............................. CTCCAAGGGAACCGTAGAGTTAGACAAAAATA 1016981 29 100.0 32 ............................. TCGCTTATGTCAGCACCGATAGCGACTGTTAG 1016920 29 100.0 32 ............................. AAATATCACGAAAATCAATCTGGCTCCGACAA 1016859 29 100.0 32 ............................. GTGATCCTGTGTTGGCCCAATCACATTAACAA 1016798 29 100.0 32 ............................. CCGCTTACCACCCCATCACTGCTTAGATCCAC 1016737 29 100.0 32 ............................. GAAGCCTGGGCGGCCTACAAGCGCGAAAAAGG 1016676 29 89.7 32 .............CT......G....... GTTTTCAGCAGGATATTGCGCTTCACCTGCAA 1016615 29 82.8 32 .............CT.T....GG...... GTGAGCCAGGGCGAATGGTTTACCTGAGTCTG 1016554 29 89.7 32 .............CT........A..... CCTGGGATTACGCTGCCCAGCGTGCCGGTCTT 1016493 29 93.1 32 .............CC.............. TGGTCATACAGTCGGCCTACTCGCCGCTGTAT 1016432 29 93.1 0 .............TC.............. | ========== ====== ====== ====== ============================= ================================= ================== 79 29 99.3 32 CCGATCCCCGCACAGGCGGGGATGAACCG # Left flank : GGCGATATTCAGCCACCACCGCCAGCCCCCGATTCAGTGCCACCTGCTATTCCAGAGCCACCCTCGGTTGGTGATGCTGGGCACAGGAGTGGATAAATGGCGATGCTCGTAGTGATTACTGAAGCAGTGCCGCCACGTCTACGTGGCAGGTTAGCGGTATGGCTCTTGGAGATTAGAGCCGGTGTTTACGTTGGTGACGTTAGCAGGAGAATTCGCGAAATGATCTGGGAGCAGGTTGAAGTCCTGGCTGAAGATGGAAACGTAGCAATGGCCTGGGCCAGCAACCATGAATCAGGCTTTGAATTTCAGACTTACGGCGAAAATCGCCGAGAACCCATCGATCATGACGGGTTACGTCTGGTGCGCTTTTTGCCGCCACAAGTTAACTAACTGATTTTATTTGATCTTTAATAATTTGATCTGGTTAAAATGTAAGCAAAATAGCTGGTAGATTTTTTATCTGCTATTTTCTTCTTGTAGATCAATTGTCTACAGCAAGT # Right flank : CCATGCCCGGCCATCAGTGGTTCGCCCAATGTCCGATCCCTGTACAGTCAGCGTCATCAGCGCGATGGTGCTTTAATTATTAAATATGGTGAGGAAAAGAGTGTTCCAAAATAAAACTGCTTTAACATAATGATTGCTGTGTGTTTCGGTAACTGCCATCTAGAGGATATTACGTCATGGAAAACTTTCTTGAGCAATTTGGGGCTTATGTTCCTTTGATCATCAATGCCGTGAAAGCATTGTTGGTGTTGATTGTGGGCTGGATTGTCGCAGGGGTAGTCAGCAGCTTAGTGCGTAAGCGGGTGAATGCGATACCGCGTATAGATCCAACGCTGGGCAACTTTCTTGCAGCCTTGGTGAAGTGGGTCATTCTACTGGTTGTATTTATTACGGTACTCGGTCTGTTTGGTATTCAGGCTACTTCGCTGGTTGCCGTGTTGGGGGCTGCCACGCTGGCTATTGGCTTGGCGTTGCAGGGCACGCTGAGTGATTTAGCGGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACAGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGGGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //