Array 1 83996-82994 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNW010000002.1 Fusobacterium ulcerans isolate MGYG-HGUT-01327, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 83995 29 100.0 36 ............................. TTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTC G [83975] 83929 29 100.0 36 ............................. AAAATACATGGAAAATATTTATGAATTAAAAAATAA G [83909] 83862 29 100.0 6 ............................. AAAATA G [83843] Deletion [83828] 83863 29 100.0 35 ............................. CAAGCAATTAAAAAACAAATTAAATCTTTATTAGG G [83843] 83798 29 100.0 36 ............................. CTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTT G [83778] 83732 29 100.0 36 ............................. GAAGCTTTATGAATTTAGTATCTACTCCCTTAAATC G [83712] 83666 29 100.0 38 ............................. TCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGT G [83646] 83598 29 100.0 36 ............................. TTGTTATCTTAATACTTCCATCTTCATTATAATGCA G [83578] 83532 29 89.7 36 ...............G.AA.......... ATAGATCAAACTTTGAGAATAAGAGATCAATTTAGA A [83515] 83466 28 79.3 35 ........TC...-.G.AA.......... GAAGTTGGGATGACCATAGCTGCAAGAGTTAAGCA A [83451] 83402 29 75.9 37 ........TC...TGA.AA.......... GAAGGAACTAAAATAGTAGGGAGAAATCCTAGAAATT 83336 29 75.9 92 ........TC...TGA.AA.......... AGTTCAAGTTCTCCAGTAAGTATATTGTAGCCTTTATTGAATATCAACTTTTAAATGGAGAAGGGGCAAGGGTGATGATGGATACTAACCCT 83215 29 75.9 35 ........TC...TGA.AA.......... GCATTAGTTGGTAAAACTTTAAAATTAACTTCAGT 83151 29 72.4 34 ........TC...TCA.AA.........C AGATATAGCATGATTCCAAGTTATGTAATAACTC 83088 29 75.9 37 ........TC...TGA.AA.......... ACCTTAGAAGAATCAAAAATTTTCTTAGTCTCTTTAA 83022 29 75.9 0 ........TC...TCA.AA.......... | ========== ====== ====== ====== ============================= ============================================================================================ ================== 16 29 88.8 38 ATTGAATAGTAACCTTTGGGTTTTTAAAT # Left flank : TAGAATTGTACTCTCCCTTTTCTCTCATCTCTCTAAATGTAGTTATTCCTATTATTGGTCTCAATTATTTTTCCTCCTCAACATCTCTTTGTTCTATTACATTCTACTATATAATATACTCTTTAGCGAAAGTTTTTACAACCTGCAATTATAAATTATCAGAAATCTCTTTTTTTAAAATATCCTGTATTTTTAAAATACTATATTTTTCATAAAAAAACAAACAAATTTTTTTTACCTTTTTAAAATTTCTCTGATATAGTCTGTAAATTACAGCACAATTATTCTGACATATAAAAAATAAATTAATTGTATATTTGGGTAATATATCTTTTTATTTTCCAAGTTAAAAATTGTATTTTATCAAATAATATTCTTTAAGATGTGATACTTTATAACATGGCTTTTTATCTATACTTGGTTGGAAAAAATCCATTAAATATGCTATAATTAGAATGTTAGAAAAGAATAAGGAATTATTAAAGTCTGAATTTATGACC # Right flank : GATCAAGAAAGATTAAATAAAGTTGGAATTATGACTAATTGAATATCAACTCATAAGTTTTCTCCCTTTTTCAAATAAAAAAGAGAAGAACTGGATATTAGCTCATGACATTTTGCTATATCTACAACTTCTCTAAAATTTCAAATTCTTATTTTATTACATTCTTAATATTAATTATTAATTACTTATTGAATAAAATATCAAGCTCCATTAATAAGTCATTATATCTTTTTAATTCATGATTTTTTACCAGAATTAATGGGTTATAAATACAATGCTGAAGTACATCTGCATCTTTTAATAATTCATCATATTCTGAATCTATCCTTTCCTTATTACTATGGTTGTGAATAGCTGTACAGATTATATCAATTTCTGTAGAAGTTGCCACCTGTAATTTTTCTAATATTTCACGAGCCATAATTGCTCCTTTTTGTCCATGATCTTTTGAATATTCAAATTTATAAGTATATATATCATGTAACATTCCAGCCATAATT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATAGTAACCTTTGGGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 209370-210885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNW010000002.1 Fusobacterium ulcerans isolate MGYG-HGUT-01327, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 209370 29 100.0 35 ............................. GGGGTAGAGGCACTTGGGAATGTTACAAGTGAAGA 209434 29 100.0 36 ............................. TTGACTTCTATTGCATTTATAAACTTATATTCTCCA 209499 29 100.0 36 ............................. ATTAGGAACTTTGAACAATCCTGTAACATGGACTAA 209564 29 100.0 36 ............................. TTTCTATATCTGCTAGTTTATCTGGGGATATTACCC 209629 29 100.0 35 ............................. TTTTTAGTCTCTTAAATAATTATTTTATATTATTA 209693 29 100.0 36 ............................. CTCCTTAATTTTTTTATAAATTTAATTTTTTAATAT 209758 29 100.0 36 ............................. CAAAGCCATTCATCATCATGTTTAATCTCTTTCATA 209823 29 100.0 36 ............................. GCCAAAGTTCTTTGCTGTCTTGATAACTTCTCTTCT 209888 29 100.0 36 ............................. AAACAAAATTCTGACAAATTAGAGAATCTAAAAGGT 209953 29 100.0 36 ............................. TTATTACTGGGGAAAAGAGAGAGAAAAAGCAAAAAA 210018 29 100.0 36 ............................. AAAAAATCTCCTATTGTCCTTACTGCTCCAGTAGCT 210083 29 100.0 36 ............................. GATTTTTTATATAAATAAACAAATCCTATTCCTAAC 210148 29 100.0 34 ............................. GTAGATACCTTTAAAATTTCGTTTATATCAGTTC 210211 29 100.0 36 ............................. GAGAAAAAAAGTTCTGTTGAGAAAAAATTTGTAAAA 210276 29 100.0 36 ............................. ATGTATTTAGGGTAGAGTGTCCATGATTATTTCTCT 210341 29 100.0 35 ............................. TCTATAGCAACGGCCATGGCAAGTGGATCAATGAC 210405 29 100.0 36 ............................. AAAAAGCTCTATGAAGTACTTTGGCTATGAGTACAC 210470 29 100.0 36 ............................. TATCTTTCCAGAAAGCTTTTTCGGAATTGTGAAGCA 210535 29 100.0 36 ............................. TGTGTTAACATTAAGCACTCTTGAAAGGCAGTTATT 210600 29 100.0 36 ............................. AAGTTTTAGAAGCTATCTCCTCTATTTTATAGAGGG 210665 29 100.0 34 ............................. TCGCTTATAGATTATTCTAGTAAATATGTAGCCA 210728 29 100.0 36 ............................. TTCAATTCTTTATTAAAATTTTCTGAACTATAATTA 210793 29 100.0 35 ............................. TATATTCCAAATTCTAGATTTTTAAAAGCTTCTGA 210857 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 24 29 100.0 36 GTAGAATATTAACTGAGTAGTTTTTAAAT # Left flank : AGGATTATGGCTGGGAAGCTTTATTGCTAAATATATCTATATGAGAATAAAGTTTTTTATCAATAGAATAGGGAGCAAGGGAGAGCAAAAAGACTATAAAATTATAAAAATGATTATAGAGCAGAAAAAATATTTTAAAAAACCAGGAAGTAAATATTATATAAATTTTTACTATATGATAGCAGATGTAAATGGCGAGGAAGTAAAATTCCTTATTGAAAAGGATTTTTATGATAAATATTTAGGGAAAAAGACTATGAATATTAAGATAAAAAAAGGGTCACTAGGAATTATGTATGGAGTGAATTTAGTAGATTAAAAATAAAGAAGTTTCCAAGCTGGAAAATTGAATATTTTTTCTAAGGTATATTTTAAGAGCAATTTGGAAGGAAAAAATTATTTTATAAAAATTTTACTGCACTTGGAAAAAAAGAAGGAAAAGCTTGATAAAATCATGAATAGAGAGATTGATAAATATTGTGAAGTTTGATTTTATGAGC # Right flank : TATACTTTAAGCAAAAACTTATTTGTAAAAAACAGCCAAATAGAATAGTAAAGAAAAAGTGTGAAACAATCTTTTTCACATTAAAAAATTTAAAATCAAAGGAGAGGATAAACCAAATAAAAAAAATTAAAATTTTCGAATTAAAGTCTATTATTTATCAAAAAATGAGGTATAATTATTATTGAGGACTAAAAGGGAGGGATTAAATGAAAAGTTGGATTCTAGAATTGAAAGTCTTTTTATTAGAAGATATAGAACCATATAAAACCATAGAAAAAATAGCTGCTTTTATAGATTCTACTTTTGATAAGGATGAGTACTGGAAAGAGTATCATAAAGATAGAAAAGTGAAAGAGTATTGTTTTAATTCTTTTTATCCAGTAAAAGTTAATACTAAAAAGTATAATGCTGGAGAAATATATACAATACAGATAAGAACTATTTCTGAAAAATTAAAAGAGCATTTTATGAAATATTTAAAAGATAATATAACGAAGGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAATATTAACTGAGTAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 219850-220975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNW010000002.1 Fusobacterium ulcerans isolate MGYG-HGUT-01327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 219850 29 100.0 37 ............................. ATAATATTTTTAAAATGTGAAGTAAGATTATTTTCTA 219916 29 100.0 36 ............................. TTGGCATTTAAAAACTACTCAGTTAATATTCTACTA 219981 29 100.0 36 ............................. ATTTTTCAGATATTTTAATTTCCACCTCTTCTGCTT 220046 29 100.0 35 ............................. CAGAAATAATAAACTATATAAATTTAACTGTAAGG 220110 29 100.0 35 ............................. CTTCTTGGAGCTTCTGCTTTAAAAAGCAGTGTAAA 220174 29 100.0 37 ............................. AAGCATTTTCTTCAAGTTCTTTTTTACAAGTAACTAT 220240 29 100.0 36 ............................. CTTTTTTGGGGGAAAGAGGTTGGAAAATAAGACTTT 220305 29 100.0 36 ............................. TTATCATTTTCAACTTCCCTTGAATTCTCTTCTCCA 220370 29 100.0 37 ............................. TTATTTCTCCTTTCTATGCACTATGCAGCAAAATATC 220436 29 100.0 35 ............................. TAATCATCTATTGGAAGATATCCTTTGTGAAAATT 220500 29 100.0 37 ............................. CTTCTGCTTCAGGATTCAGCATTATATCTATTCCTAA 220566 29 100.0 35 ............................. GACCGACAAAAAGGTAGGTATAGAGCTATGGTAAA 220630 29 100.0 36 ............................. CTGTTGTTACCTCAGGACATTCAACTGGAAAGACTG 220695 29 100.0 35 ............................. ATCATCTAGCTCATTTACATCTGTTTCTACTCCAA 220759 29 100.0 36 ............................. CTTAAACATTTTAAAGTTACAGGTTTTTGAGATATA 220824 29 100.0 35 ............................. GCAGCAGGAGCTGGGTCATCAGCACTTCTAATTTT 220888 29 100.0 28 ............................. CCATTTGATCCACAAGAGTATATGCAGA Deletion [220945] 220945 29 96.6 0 .........................T... | TC [220969] ========== ====== ====== ====== ============================= ===================================== ================== 18 29 99.8 35 GTATAACAGTAACTTTGAAGTTTTTAAAT # Left flank : GAGGGAAAAGAGTTTGTTCCGTTCTCTATAAAGGAAAAGATGTAGATGAAAGGTAAAAACTATAACTATATATTTCTTTTCTATGATATAAATGAAAAGAGAGTAAATAAGGTTTTCAAAATATGTAAAAAATATTTGAGTCACCATCAAAGATCTGTATTTCGTGGAGAGATTACACCTAGTAATTTAATAAAACTACGTTTAGAATTGAAGGATATAATTGATAAAAAGGAAGATTTTATAAGCATTGTGAAACTGGTAAGTGAACATTATTTTGATGAGGAAATAATAGGAACACCTTGGAAAGATGATGAAAATATGTTTATATGATTTCCAAGTTAAAAAACAGATGAATTTATGAAGTGATGATTTTAAAGGAGAATGAGAAGAAAAAAATTAATTGCTGAATTTTTTCTCTCTCTTGGAAAAAAAGTGGTAAAAAATTCTTAAATTCTTTGTTAAGAATGGAAAAGAATAAATAAAATGCTTATTTGATGAAG # Right flank : TAATGTTTATTATTTTTATCTACCCATATTAGCCTTATTATAATAATTATAGCAACTACTATTATTATTTGTAATGCTGGTGGGGCATTAAAAAAGAACAGGAGTTCTCCTAATCTTTGCAATAGGAATACCCATGCAAACCATAAGATTGCTAAACCTATCAATATATTTTTTAATAGTTTCATAATTTCACCTCTTTAAGGTATATTACCATAGTTTCAATAAATATGCTATTTTAAATCAACTAAAAAACTGCACTCTTTATCTTAGCCATCTAAGATTTTAGGTGCAGTATATTTTTATCCAGCTGAAATATTAGCAGTTCCTAAGAATTGATTTCTAAAAAACAAATACAAAATCTCAGTATCAAGAGGGCTGTATTTAACAATAACCTTTTTTCCTTCTAAAGTATTTAAAGAATTGTTAGTGTAGATAAAATTATTAAATCTCAAAGAAGATTTACTTATTTTTCTACTAGCTTCCTGAAGAAAAATATCAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAACAGTAACTTTGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 830833-831187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNW010000005.1 Fusobacterium ulcerans isolate MGYG-HGUT-01327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 830833 29 100.0 35 ............................. TAAGTGGTGCTGAAAAGATAAAAGCAGTAGATAAA 830897 29 100.0 38 ............................. CAAATGCTGCTCTTCCCCATCTGTTAGCTAATACAAAA 830964 29 100.0 36 ............................. ACAGGTTTATTTAATGGTATTTTATAAATTTTAAGA 831029 28 93.1 37 ..............-.............A AGAAAAGAAGGTTGAAATATACCTTCTTTTTTATTTT T [831049] 831095 28 82.8 37 ....A..T...-..A.A............ CTTCTTTTCATTTCCTCTTTATTCAAAGTTTTCCAGG 831160 28 86.2 0 .C..A..T......-.............. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 93.7 37 TTGACTAGTAACTTGATAAGTTTTTAAAT # Left flank : ATACCTGCTCCAGTAATGGGAGGGGTTTCAATAATATTGTTTGGAATGATTTCATCAGTAGGAGCAAGAACATTAGTAGATGCAGGATTGGATTTTTCTAACTCAAGAAATCTTATCATAGCATCATTAATATTTGTATTTGGAATAGCAGTAGATAATATTGTTATCTGGAAAACAGTTTCTCTTTCTGGACTTGCACTTGCAGCTCTTGCAGGAGTAGTTTTAAATAAGGTTCTTCCTTTAGATAGAGAAGTAGCAATAAATAAAAAAATAGATTAATTTGAAAATCCATTGATCATGCAAAATTTATGATTGATGGATTTTTTATTTTCCAAGGGAAAAGATACCAATGGAAATTAAGTTAAGAAATAAAGATATAAATAGAAGAGAAAAATAAAAATGAAAAAAATCTTTGTTTAGGTTGGAAAAATAAATATAAAGTGGTATAATTAGAGCAATGGAGAAGCTAAAGGAAAAAAGAAGTTGTGAATTGCTGAATA # Right flank : TGTATTCTTTAAATATATTTTTTTGATTGAATAAATAAATTTTTAATAATGTTCTCATTATTTTTTTATAATTTTCAACATAATTATCACATTTTTTTAACATACAAAAATATTAAATTTAATGTATGTTAATTTAATTGTCGAATTTACACGAATAAATATTTTGTTTTAAGAATGTTTTAGAAAAAATAAATGTCATTAAAAAAAGAATTTTAAAAAGAAAAATAAAGATTAGTTATAAATTATAATACTTAAAATTTTTTAAAATAAAAAATCACAGATATTAAAAACATCTTTGGATAATGCAGCAATAGAAAGTATATATGAATAGTCATGGATAAATTTCTTTGGGGAAAAATACTCCTGTGATAACAATTAGGAGGGATAAAAATATAAATATTATTTAGTAGAAAGCATAATTGCTGTTGATGTAAAGTATACATGATATTTCAAGGGTACTTTAATGGAGAATTTTATTTTTTATTTTAATATAATTAGGA # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGACTAGTAACTTGATAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //