Array 1 29327-26677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCVH010000306.1 Klebsiella pneumoniae strain BK-168 Contig306, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29326 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 29265 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 29204 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 29143 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 29081 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 29020 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 28959 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 28898 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 28837 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 28776 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 28715 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 28654 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 28593 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 28532 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 28471 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 28410 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 28349 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 28288 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 28227 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 28166 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 28105 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 28044 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 27983 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 27922 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 27861 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 27800 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 27739 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 27678 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 27617 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 27556 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 27495 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 27434 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 27373 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 27312 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 27251 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 27190 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 27129 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 27068 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 27007 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 26946 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 26885 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 26824 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 26763 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 26705 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2351-2928 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCVH010000407.1 Klebsiella pneumoniae strain BK-168 Contig407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2351 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 2412 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 2473 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 2534 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 2595 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 2656 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2717 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 2778 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 2839 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 2900 29 93.1 0 ............CA............... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.6 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CGAAAACGGCAACCTTCATAAAAACGTCTTTTGTATTCCCCCC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //