Array 1 228679-227001 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLMC01000001.1 Klebsiella michiganensis strain AS012456 AS012456_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228678 29 100.0 32 ............................. GAAGCGCTCAAAGAGATACTTATCACCGGCAA 228617 29 100.0 32 ............................. CGAAGGCTTAACACAAGCGAGTTTTTCAGAGA 228556 29 100.0 32 ............................. ATATGCCGATCCCGGTTGATACTGGCATGGAA 228495 29 100.0 32 ............................. CTACGAGGGGGATTCTGGCAGCACTATCAGCC 228434 29 100.0 32 ............................. AACCCGTCAGACAGTGGGCCTGATACGAAAGA 228373 29 100.0 33 ............................. GAGTTCAACGAGACCGATCGCACCGGAACCGGC 228311 29 100.0 32 ............................. GTTGAGTACTCAAATAGATATGAGTCTATGAG 228250 29 100.0 32 ............................. CCGTTTGGCCACTCATCGAAGCGGTCACGAAA 228189 29 96.6 32 ............................A ATTGTCTTGCCGTAAGCCCAGAGACTTCTCCC 228128 29 100.0 32 ............................. GTTTTTTTGCCATAATTAACTCCGAAAATAGT 228067 29 100.0 32 ............................. CGGGGATAGAGGATTTCCGTTTTCACGACCTC 228006 29 100.0 32 ............................. GGTTTCGACTACTCCATGAATACCGTCTCCTC 227945 29 100.0 32 ............................. TTGACGGGAGGGTATGGTCTGCGATTGTCATT 227884 29 100.0 32 ............................. GCACAACGGAATACTTGTCACTGACTATAGCT 227823 29 100.0 32 ............................. AAAATCCAGCAACACTTACATCAACCTGAGGC 227762 29 100.0 32 ............................. TGTTCGATAACTTCTGATTTACGCATGGTTCC 227701 29 100.0 32 ............................. AGCAGCGCGCTAACTGGTTCCAGATGGCACAG 227640 29 100.0 32 ............................. GGCCAGGCGGTCGTAGGGGCGAATCAGTGAAT 227579 29 100.0 32 ............................. CTACGAGGGGGATTCTGGCAGCACTATCAGCC 227518 29 100.0 32 ............................. AACCCGTCAGACAGTGGGCCTGATACGAAAGA 227457 29 100.0 33 ............................. GAGTTCAACGAGACCGATCGCACCGGAACCGGC 227395 29 100.0 32 ............................. GTTGAGTACTCAAATAGATATGAGTCTATGAG 227334 29 100.0 32 ............................. CCGTTTGGCCACTCATCGAAGCGGTCACGAAA 227273 29 100.0 32 ............................. TCGCGACAGATTGGGGCGACCTGGTATTTTGC 227212 29 100.0 32 ............................. TCTTCAGAGCGCACCCTTGCTGTTCAGGCTGC 227151 29 96.6 32 ............T................ CAATGGTAACAAGTGATCCGAGCGCAATCATC 227090 29 96.6 32 .............T............... GACTCACGAAACGCTTGGTTGATGTCTGAATG 227029 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACATCGCCTGATGGCTACGGGAAAGGCGCAGGGGCTCTATTTTGGTCTGCCGACGATGGCGACGGCGAATGCCATGTTCGATCGTATGTCGGAGAGCTGGCTGGCGTTGTATCAACCCGGTTCACGGCCAAGCCTGGTGCTGGCGCATAGCGCACGTGGATTAATGGATCGCTTCAATCAGTCTTTGTGGTCGGGAGATTTATCGGGTTCAGAAGAACCCGATGAGCTCCAGCCATCCAGCCAGGGATGCGCCGCCTGGTTTGCCGACAGTAATAAAAAAGCGCTGTTGGCCGAGGTGGGCGTTGGCACGCTCGATCAGGCGATGATGGCGGTGATGCCGTTTAAACACAATAACCTGCGGATGTTAGGGCTGAATAATAAAATCTTGCTGGCGGATGAGATTCACGCCTATGACGCCTATATGTCGCGGATTCTGGAAAGTCTGATTGAAAAACAGGCCAGCGATGGCAATACCACGATTTTACTTTCCGCCACGCTCT # Right flank : CCCGGAGGAAACGTGGCAACAGTTCAATACACGTGTTCCCCGCGCCGCCATCCTTATTATCCTGTACTTTATTTTTTCCAGCATTCTTTAGTGTGGCAAAGTCCGCTTCCAGGTAATACTTGCCAAATTTTGGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACCGATGTTTTACCGATGCTGGGTTCCGAGCCCAAATCCAACCCGTCCTGCCAGACGCGCTGCCAGATATAAACCTGGCTGTCGGCGATGGATCGCGTGCTGGCAGCCAGTAGCAACAATGGTATTAAAAAATGAAAACGCATCATGGCGACAGTCCTTGTTGCCTGATTTTATCGTTAGTCTATTTTGAGGCGGGTCTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATTACATCGCGTCCGCGATGCTCAATACGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAGCTGTACGTCATGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 102661-100952 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLMC01000013.1 Klebsiella michiganensis strain AS012456 AS012456_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 102660 28 100.0 32 ............................ TATAACTCGGCCACAGGTCGGCTTATCCTGAA 102600 28 100.0 32 ............................ ATCAGGCAAAACATTTCCTGCATGTTCGCGAT 102540 28 100.0 32 ............................ TGATCCGCAGATTGTACCGGCGTCGACCACAG 102480 28 100.0 32 ............................ AGACCGATTTTATCAGCCAGGGGGATGATCAC 102420 28 100.0 32 ............................ ATGTACTGTGCCAGCAGCTGAATGCGGAAGGG 102360 28 100.0 32 ............................ GCAGTGTCGCGTTCCAGAAACAGCCTGATTTT 102300 28 100.0 32 ............................ AATATAAATTGCCTGAATTTCTTGCGCGTACT 102240 28 96.4 32 ......................C..... ATTTGCCGAAAATGCTGCCGCAGTTGTATTTG 102180 28 100.0 32 ............................ AGTATCCTAAAGAACCGTTGCGGCGGCGGTTG 102120 28 100.0 33 ............................ TCTACGTACAGCAGAGTAAAGCATGAAGTCAGA 102059 28 100.0 32 ............................ TTCCTGGTTTCACCATCTACAGCTTTCACCTG 101999 28 100.0 32 ............................ TTCAGGGATATTCGCGATGTCCGCCTGAGCAG 101939 28 100.0 32 ............................ ACAAGTTGTAGGCGGCCATCAGGTAGAATTTT 101879 28 100.0 32 ............................ ACACCAAAATGGCTTCATGGCTCATTGAGTGG 101819 28 100.0 32 ............................ ATCAGAGTGCCGGCAGCTTTATCGCCGGCACG 101759 28 100.0 32 ............................ TCAGAGCGGTGATTTCTGCGAAGGTTGTAGAT 101699 28 100.0 32 ............................ TTACAGGTGACATCGCACACCCCTGATACCTC 101639 28 100.0 32 ............................ TGTGGCAGCCGAACAAAAACGGCGACGGGATT 101579 28 100.0 32 ............................ AGTGCAGCAAACCAGAGAAGGGCGCGCCGGCT 101519 28 100.0 32 ............................ AGAAGAAAAGGCAGACCCGATCAACGAAGAGA 101459 28 100.0 32 ............................ GTATTCGGTCCAGTGCCTGATGGCGCGGATGC 101399 28 100.0 32 ............................ CGCCGCGAAACTGGGCCACGCCTTCAGCTGCT 101339 28 100.0 32 ............................ ACCAACAAACTGCAGGCAGAGCAGAAAGCCGC 101279 28 96.4 32 ............G............... ATACGCCGTGATGAACTGAACGGAATCCCGAT 101219 28 96.4 32 ............G............... AAACTTCGCGCGGATTTCAGCGATTTTGTTTA 101159 28 96.4 32 ............G............... CGCTACTCCGCAAAAATGAAATTCGTGTGCTG 101099 28 100.0 32 ............................ ATGTTGCGGAGAATCCACAGCCTGTTCTCAGT 101039 28 100.0 32 ............................ TGCACGAAATCAACGTTGCCCGCTCGGTTGCC 100979 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTTATCCATCAGGTGGTGGATAAATTTATCGTCGAGCTGCAGGTTCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTCAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCAATGGCGCGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAATGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGACAGGTGACCGTTGAACTGGATAAAGAGAAAAATGCGCTGACCTACGACTTCCAGAGTGCGCAGAAGCACAAACCGGAAGCTGCGCATTAAGTTTCGGTACTCAGTGACAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCTATGTCCTGGACCCTTTTTTATTCCACTTTTTAACTTGTTGATTTTAATAAAGAGAAAATATAGCGTAAAATTATGGTGGCAGAGAGGATGTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTTGTTCGTTCA # Right flank : AGAGCTTGCCCACACTGCTGTGCAAGCCAAACGAGTCTAAAGAAATTGCCAAAGTAATAGGTTATTTTGCAAGTTGCGATGAATGTCACCGTATTGCATCTAATATACTGTTTTTATAAACAGCTATCGACTTTGAGCCACAGGATGTGACTATGCCCGCGAAGTATATTGCCCCCTCGGATTTAAAAACGATACTCCATTCAAAACGCGCCAACATTTACTATCTGGAAAAGTGTCGTGTGCAGGTTAATGGGGGGAGAGTGGAGTATGTTACCAGTGAGGGGCATGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCCATTATGCTAGGAATGGGAACCTCTGTTAGCCAGGCAGCGATGCGTGAGTTCGCCCGCGCGGGTGTGATGGTAGGTTTTTGTGGTACGGATGGCACACCTTTATATGCCGCCAATGAAGTCGATATCGACGTTTCCTGGCTATCGCCACAAAGTGAATATCGACCAACGGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //