Array 1 2250740-2248605 **** Predicted by CRISPRDetect 2.4 *** >NC_019745.1 Gloeocapsa sp. PCC 7428, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2250739 37 100.0 34 ..................................... CGGATTGTAACCCTTTTCTAACGTAATCGATAGT 2250668 37 100.0 35 ..................................... TGAGTGAAGTTGCAAAGTTTAGCAATCGAAGTACT 2250596 37 100.0 34 ..................................... GACTTACTGCAACAGCTTTGTATTTCCCTGCAAA 2250525 37 100.0 37 ..................................... ATCAAAAGCCATAGTTTGTCCTGTAGATACACCCAAG 2250451 37 100.0 38 ..................................... TTTGAAGCCATGCAAATGTATTGATTAGGCGATCGCAA 2250376 37 100.0 34 ..................................... AAAAACTCGCTGCATATTACTGGGTTAGCCGTCG 2250305 37 100.0 34 ..................................... AAGAGTTGAGTCGCCACAAGCGAGGGCAATACTC 2250234 37 100.0 33 ..................................... GTGTTCTGTGATTTGATTCATTGCTTTACGCGC 2250164 37 100.0 35 ..................................... GGCGAAATGGATGGCGTTAGGCACAATTCCTTGCG 2250092 37 100.0 35 ..................................... ATTTTAAGCAAGTATAACGACGAATACTTACTTCG 2250020 37 100.0 37 ..................................... AAAAAATTGAATTTGCTGTGCGTGGTGGCAATATTGA 2249946 37 100.0 36 ..................................... GCCTTTGTTTTTTTAAACAAGTTTTTGTTAAACTTT 2249873 37 100.0 36 ..................................... CAAGCGTAATTCCAGTAAAAGCTCCTGCCCCCGCAG 2249800 37 100.0 36 ..................................... AATATATTGCCAGATCGAAGCTGTGTCCCAAAACCC 2249727 37 100.0 36 ..................................... ACTAGCACCACCTTGTTTGGGTACTTTAAAAAACTT 2249654 37 100.0 39 ..................................... GCAGGACTTGGAAGGGAATAAAACGGGTGCCTTAATTAA 2249578 37 100.0 35 ..................................... AGCGATTGATTCCGTATACCCACAAAATGCATCAA 2249506 37 100.0 34 ..................................... GCAGTAAATCGTAAAAGATTTTCCACGATTCTTC 2249435 37 100.0 34 ..................................... CATCTCTGCAATGTTACGGGCCACCTTGAGTGCT 2249364 37 100.0 38 ..................................... GGATTCCGTGTAAATCGCTTGCTTTGCGGTTACAGGGC 2249289 37 100.0 35 ..................................... ATACCGCTATCGTTGCGGGCTGGTATATTAAAGAG 2249217 37 100.0 36 ..................................... GTCGCAAGACGTATCGTAGAAGATCGCAATAAAAAC 2249144 37 100.0 35 ..................................... AAAGAATTTTCAATAACTTTTAGCCATGCGATCGC 2249072 37 100.0 34 ..................................... TTTACCAGTCTTTGTTCGCCAATAGCAAGCTGCG 2249001 37 100.0 34 ..................................... GATGCCGTCCTTGGTCCAAAGCCAAATCTTTTGC 2248930 37 100.0 34 ..................................... TTTTGTGATTACTTTGTCGATGTACTCAACTTTT 2248859 37 100.0 35 ..................................... AAAGCGCTTACTCTGCTGAAATTATTAGGAGCTTG 2248787 37 100.0 36 ..................................... TATTGCTGAAGTACCTTGTAACTCGTATTACGAAGA 2248714 37 100.0 36 ..................................... TTAGCATTGCGGGGAATGCAAGGATAAACACTTGAA 2248641 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================= ================== 30 37 99.9 35 GTAGAAATCCCTTTTATTGAAGGGACTAAATTGAAAC # Left flank : TATCTTCCCTGGCTAAACCTTCAGGGAACTCCTACTTACCGAGAGTACAAAGATCATTTAGCGCTCTGTCTCGATGGCAAGGTTGCTGTTGTCGCATCTTGTCAGGTATTTCCAGGATTTTGGAAATGGGAATCTGAGTGCCGTCAGGGTAAGAAGGTGGGGCAAGTTGGCTATCAAGTGCAGTTAAAGTTTGCAACTATGGTGGCTGGACCAATTATCCTAGGGTATGCAGCGCACTACGGCTTAGGTGCTATGATTCCTATGCGCGAGTGGGTAGGTGTTTATCAGGGAATCGTTCAGAATAACGACATGCTAACGACTTCAGCGAATTAGTTCGTTCTAGATTCGCGCAGAAAGCTGAAACGGTTATATATTAAGGAGTTCAAGTATCTTCTTGTACTTGTGAAACAGTGATGAGTATAATTGTGTTGGCAAATGCGAAGGCATTCGCGCACCCGAACCTTGAAAACCTCATACAGAAAAAATTCGAGAGAGCCGCT # Right flank : ACAATATGGAGCTTACACAAGTAAAGTGTGAATTAACTAATAGCAGGATTCACGACCATTTTATGGTGCAATAAATCACCTCACTGATGCTGCTTTAATAGCAGAAGCTAGTGTCGACTATAACATCGAAGATATAGCGATGCTGCTCGATATAATCAAGACCATTAGTACTATTGGTCTTGATCTTCTACGTATCAGATCCAAAGCTGATAACTAATACTTAAAATCCACGTATATATATGAGTAGCGCTCTCTCTCGTGTATATACGTAGTATAACCTGAGTTCGGGTTAAGCACTTTGAGATAAAAGCCAGTCCATCTGAAGGCTGGGTTTCTTAGGTTGATGGCAATAAGCGATTAATCCACACAGAACGTTAACGCAAAAATTCACAGGACTACGGTGCCTGGAATGTTCAATCTGAGAAATATTCTTGAGTTGGTCGTTAATAGTCTCAATAATGGAACGTTTACGGGATAAAAGCTTGTCATGCAGAAGCATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATCCCTTTTATTGAAGGGACTAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.80,-8.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 3442926-3446127 **** Predicted by CRISPRDetect 2.4 *** >NC_019745.1 Gloeocapsa sp. PCC 7428, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3442926 36 100.0 37 .................................... ACGGGCTTGCCTGTATCCTTGTCCAATGACATAGATA 3442999 36 100.0 38 .................................... TTTTGATTTTCTAACTCAAGCTCCCGAATGCGATCGCT 3443073 36 100.0 35 .................................... GGAACTAATCGCTATTTCGTTAGCGGAAGTCTTGG 3443144 36 100.0 35 .................................... GCTATATTTAATTCTTTTTTCACCCAATTACGAGC 3443215 36 100.0 36 .................................... TCGATAGCCGCGCCGCTCGCCATCAGCCGTTCAGGA 3443287 36 100.0 35 .................................... ATCATCAATTTCCAAAACAGCACAGACATCCTTAG 3443358 36 100.0 36 .................................... TTTCTGATCCTGGAACGTATGGAAATCCGTTAAAGT 3443430 36 100.0 37 .................................... AAGCTGTGCGCCAAAACTTCGGAAGTCTTCAGATGCT 3443503 36 100.0 35 .................................... GTGTAAGTCAGTTAGAATCTGACCTACAGCGCCTT 3443574 36 100.0 41 .................................... TGTTTATTTCTAGCTGCACTAACTTTAGGTACCATCAACAT 3443651 36 100.0 36 .................................... ACCTTCCCTAGCTTGACTGCGCGTCGTAAAAATCGC 3443723 36 100.0 34 .................................... ACGCACGCGGGATTGGTGGGCGTTTATTGCAGCA 3443793 36 100.0 35 .................................... TTTACGTCGAAAGCGTGGTTTGACTGAGTAAACGC 3443864 36 100.0 38 .................................... ATACCGCTGTTGCGATTGGTGACGACGAAGTTACTCTA 3443938 36 100.0 35 .................................... TGATAGTAAATACGCCTTAGAAGTTGCAAAATGTG 3444009 36 100.0 35 .................................... ATTCAGGCAGCGGGGAGAATCAGAGCGAACAATCG 3444080 36 100.0 36 .................................... AGTCTCGTAATGGTGCGCGCGTTGAGTTTTTAAAGA 3444152 36 100.0 36 .................................... AATAGCGCTAGCGCGTCTTACACACGCGTCTAGGCG 3444224 36 100.0 37 .................................... GCATGATTGGGCTTGCTGAGGCTGCTGAGGATTTTAA 3444297 36 100.0 34 .................................... TGTAAGGCGCGTTACACCATGAAATTCAACAGAT 3444367 36 100.0 36 .................................... TGCTGGGAAGCTTTCTGCCCGTGTACGGATTGACAA 3444439 36 100.0 35 .................................... AAAACCGTAACACCATCAACCCAGTTATTCAAAGC 3444510 36 100.0 36 .................................... GCAAACCAGATGCGATTGCGCGCTGATTTTAGCTTA 3444582 36 100.0 36 .................................... ATCCAGATATCTGCGCCCAACGACTCAGCAATTTCT 3444654 36 100.0 35 .................................... CGGCGTGCCTTGCGGCTGTAGATTTTCACTGTGAG 3444725 36 100.0 37 .................................... TTTTATCCTGCTTTTCTGATGGTGTGGCACTATACTG 3444798 36 100.0 36 .................................... GTCGCGTTGTGGGAACTAGCAACAGCGCCACTAACA 3444870 36 100.0 37 .................................... ACTACATGTGCGGTTACCGTAACGCAACGCTAACTCT 3444943 36 100.0 36 .................................... TTGATGAGGAGATCGGATGGATTTCTAGTAGAAGCG 3445015 36 100.0 36 .................................... AATGAAGATGAATGAGCAGCCAAATTCACGAGCGAT 3445087 36 100.0 34 .................................... ATATTCGTTACTGTTTAATTATTGTAGTAAGCTA 3445157 36 100.0 36 .................................... TTACGTGGGTCTAGTGCTTCTCCTTTGCCCAAACCT 3445229 36 100.0 35 .................................... TACCTAACCATTCCACGCGAAGACTTCGAGAAAAA 3445300 36 100.0 35 .................................... CTAGCTGCATCAAAAAGTACGTCTGCACTAAAGCT 3445371 36 100.0 35 .................................... TCTATAGGTTTGTAACTCATGGTCGTCTGAATGTT 3445442 36 100.0 36 .................................... CTTCCCAAAGTTCTTCTCTGAGTTCGGGCTTCTCCT 3445514 36 100.0 36 .................................... AAGATGAATTCCTAATTTACGTCGTAGATGAGGAGG 3445586 36 100.0 39 .................................... AGGATAATCAGCACTGGAGACTACCCAAATCAGAGTCTG 3445661 36 100.0 36 .................................... AAAGTCTACAGCAGCCAAGCACGCTGCATAGGGTTC 3445733 36 100.0 34 .................................... AGCGAGCAATCAAGTCGATTGACTTTTTAGCAGT 3445803 36 97.2 37 ...........................T........ CCTTAAACAACGTGCGCCAGCTATCAGGCTTACCTGC 3445876 36 100.0 35 .................................... GAGGAGTAGGTAAATCACTGCTCTCCTACGATATT 3445947 36 100.0 36 .................................... CTAAATCGGCCGTTTTTATCCTACTTCTTACAGTCT 3446019 36 97.2 37 .......C............................ GGAATTAGTACCGATTGCTAGCGATCGCTATGAGGAT 3446092 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 45 36 99.9 36 GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC # Left flank : CCCTAAGCGATGGCGTAAAGCTTACAAGCTGCTGGAGGGTTACGGAGAACGTGTTCAATACTCGATTTTTCGTTGTTGGTTAAGTCAGCGGATGCGAGAAAAGCTGCGATGGGAATTGGAGAGAGTTCTAACGAAAGAAGACGATTTAATTTTGATTCGTCTTTCTCAGCAGTGTGTGAAGGATTTGCCCAAGTACAATCGTCCTAATACTTGGTTGTTAGACGAAAAAGGTTTTCGGGTAATTTAAAAATGCAAGTACCTCTGAATGTGGCAGCCAAATAAAGCATGAAAACAGCCCTGTGTACTGTTTTATATAGCTTAGAGGTTAAAAAAACACGTACTGAGGTGCTTGCAAAACGGCCAAACCCTTACTGTACAGGGATCTTGAAACCAAGGAAAGTATGTTTTTATTGTCCAATTGGTCATTTCTGGTCATCTATGAGGAGGTGCTTGTGTAATGTAGCAGGAATACTTACCAAGAAATGGTTTCAGCGTTCGGC # Right flank : CTGGTGATTGCCCGTGACTCGATTCAACAGATTCATCGATGGTGTTTTAACCTCACGCGATCAAGTGCTAACATTCCCTATTGAGATGAGTCCTAGCGATTCTTCGGGAGATATTAAAGCATCCCATAAGGCTTTTCAATTATCTGTATCAATCCAGAATTTGGATCAAATCACCACAGCGAATCGTACCACCTTGCACGACACTGGCGTAAACGCCCACGTTGCCATTATTGTGCTGCACCGCTGTTTTAAGAATACTTGGATCGTTGGGTAAATCGCCTTGCGGTAATGTTGTCATCACACAACGGGGACAAAAGCCTGTAATTTTGATTTGAACTTCCTCCCCGATCGCAACTATGCGGTCAATCCAGTCGTTTTCGATAAAATTGTTACTCGTAGTCGAAGCAATTTCAATATTAGGACGAAATCTGCGCATCTCAAATCGTCCTGATGGAGTTAATTGCTGTAAGCGTTCGATTGTTGCTGTTGTAAGTAGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 5170418-5172269 **** Predicted by CRISPRDetect 2.4 *** >NC_019745.1 Gloeocapsa sp. PCC 7428, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 5170418 37 100.0 36 ..................................... TATCTTGGAAGAATTCGAGCGGGCTAAGCCTTTTTA 5170491 37 100.0 35 ..................................... TTTCAATGTTTGGACAGCAGGTAAACCCACGCTGA 5170563 37 100.0 34 ..................................... AGCCTGCTAAATCGCTACTGTAAGGCGCTCCGTA 5170634 37 100.0 40 ..................................... ATGGCACCTCTATTCCTCTCAGTTCGCAAACGATGGGGGT 5170711 37 100.0 39 ..................................... ACTAGCACCACCTTGTTTGGGTACTTTAAAAAACTTAGC 5170787 37 100.0 35 ..................................... TTCGTCTTCTGGTTTCTCGGTGGCTACTTCCACGT 5170859 37 100.0 35 ..................................... TCTAACTGCCTCTGTGCCTGTCTTTCCAGAGTCAC 5170931 37 100.0 47 ..................................... CCAGGAGCATGAATACCCGCAGGTGGCATAACAGCAGGAGCGAAGAT 5171015 37 100.0 36 ..................................... CCAGGAGCATGGGGAAAGAGTATTTATCCGTTGGGA 5171088 37 100.0 33 ..................................... ATCGATTAAATCCGCGATCGCATCTAACCAGTT 5171158 37 100.0 33 ..................................... CCCAGATTTATCGGTTTGTTCCACAGCGATCGC 5171228 37 100.0 37 ..................................... GTCGCTGGGGTACGCCGAAATCGCAAGCATCTAATGC 5171302 37 100.0 34 ..................................... AATTTCGCGCTGCTGCATAAGCTGGGAAGATTTT 5171373 37 100.0 35 ..................................... TTTGAGGAACCAGAGTTAGCGTCTGCTTTAGTAGC 5171445 37 100.0 35 ..................................... AAAACCCAATACAGGGCAAAAACCAGCCGCGATCG 5171517 37 100.0 34 ..................................... CGCTTAGGGCAGTTTGTAGCACGCAAACTGGGCA 5171588 37 100.0 35 ..................................... CCTTACGGATTTAAGGGACTTGCAGCGAATGAACC 5171660 37 100.0 33 ..................................... AGCCAATCTTTGTAAAACTGACCGCTATACCTG 5171730 37 100.0 35 ..................................... TCGGCGGATTTAAATTTATGTCCTTAACTAAACGC 5171802 37 100.0 38 ..................................... AAGCCCGTAGCATTGTATAAATCCTGGAAGCATACCCA 5171877 37 100.0 33 ..................................... CTACTAGTTCAGGTTCGGACAACCACATCTTAC 5171947 37 100.0 35 ..................................... TTTATTTCCAAGGCATTGCGTACGGCTGCGGGAGT 5172019 37 100.0 35 ..................................... TTATGAGCGTTCAAGCAGCAGCAGCAGCGATTGGG 5172091 37 100.0 34 ..................................... GGATAGCTGACTTGGATCGACTAACTTTTTCCAC 5172162 37 100.0 34 ..................................... CTGGAGGTGTAGTACCTCCAATATAAACAGTAGT 5172233 37 97.3 0 ..................................T.. | ========== ====== ====== ====== ===================================== =============================================== ================== 26 37 99.9 36 ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC # Left flank : AAGATAAGCGCCGCACCAAGATTCACTCAATTCTCAAATCTTACGGTCAGTGGGTACAGTACAGTATTTTTGAATGTAACTTAACTGATAGCCAGTATGCGAGAATGCGATCGCGTTTATCTAAACTCATTAAAGCCGAAGATAGCATTCGATTCTACTTTCTGTGTGGATGTTGTCAAGGTAAAGTTGAAAGACTTGGTGGAGAACAACCACGCGATGAAACCATCTTTTTTGCTTAGGTGAAACATTATTTGCGCGGAAGGGTAGCTGTTTATCCTAGCTAAGCTTAAAAAAGTCATGAGAGCCTTTATATAGAAGCCATACAAGCTCCTTTATCCTAATTCTAGATCCGCGCAACTTCTCAAACCTTTATCAAATCTAACTTCTCGCTTGTAGTCTCACTAATTTTATTTATGTTCTTGACTTTAAATGCTATAGTTATGTCTATATCGCGCAACTGCACCATGAAAACTACATACTGTAAACTTTTCAGCCACGTG # Right flank : CGCTACAAATTCGTCTTTTGAGCAGAAGAAAACTCAATTTAAATAAATATTTTCAGCAGTTGAAATCAAAAAAAGCGATAGATTTTGGCACGCTTTTATTTGTAATTAATACTATTTTTATATGCATATTGTTGTTTAATTCATAAAGGTTTATTGAGCATTGGCTCAAACTCTTATCTATGCAGATTTCTTTTTGTTAAGCTCTTAAGCTAGCTAAGACGGGCAGGTAGGAGGGAGATCGCTACGATCGCTAAAAATAGCAGAGCAGAAACAGTTTCCAGCGTTGCAACGTTTTGAATTCGAGTGGTTCGATACCAATCTTGCCGCACCAGAATCAAGCCCAACTTGAGCAGCACTATGCCAAAGGCGATCGCAGCGATCAGAGTCAGCCAGCCGATGTACCAAAGAACTCCAACAACTACACTTGCGATCGCATGATAAATCAACCCTGGAACAAGCGATGCAGTCTTGGGTTTGCGCAGTTTTACGGTAAAAATGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //