Array 1 87545-89506 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEQW01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1265 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 87545 30 100.0 36 .............................. TTCTACCTGCTATTTTTTTATCACTTACAACTAATT 87611 30 100.0 36 .............................. AAAAGACAAATATATCTATGGTCGTAGAATGTTCAA 87677 30 100.0 37 .............................. GGAATAGAAATATTTTCAATAACTACATTTCCAATTT 87744 30 100.0 36 .............................. ACTTTCATTGCCATTTTTATTTTTTCTTCTAGTTCT 87810 30 100.0 37 .............................. TTTCTTTCTTTTGCTCTTATTGTACTTTCTGCAAGTT 87877 30 100.0 35 .............................. ATTGTAAATATTTTATTATTTTTAACTTTAATGAA 87942 30 100.0 36 .............................. CCCAGAGTTTTCATATAAGATTTTAGAAGAAAATTT 88008 30 100.0 35 .............................. AATTATGCCATAAGGCTATTATTATTTTAGCATAA 88073 30 100.0 36 .............................. GGAGAAAATAAAGATCCAAAGGTTCTAGCTAAATGT 88139 30 100.0 38 .............................. GGATTAATTTAGTTTTCTCCATCTTCCTCATTTCCTTT 88207 30 100.0 37 .............................. TATCTCTATCACTATTTGAATAAGTATATAGACTGGC 88274 30 100.0 36 .............................. GATGTTAAAAGATGAAGCTAGTGCATTACAAGATGT 88340 30 100.0 38 .............................. GAGGCATACAATTTAACTTGTTTAGTTGCTACTATTTT 88408 30 100.0 37 .............................. GAGTTTGGTACTGTTATAGATTGAGCATTAGATGCTA 88475 30 100.0 37 .............................. GGAATAATAAATATTTTCTTACTAATCTTGCCTTTAA 88542 30 100.0 35 .............................. TGAGTTAGGACATGCTATATTACATGCTTCTAGTA 88607 30 100.0 37 .............................. TGCTTTAAAGGGGGCTAAATGATAATAGGCTATGTTA 88674 30 100.0 37 .............................. ACTGTTATTACAATTAAACTTGTTAATAAAAATATTT 88741 30 100.0 37 .............................. GCAAGACCATTTTGGAGAACAGCAATAGATGCTAAAT 88808 30 100.0 37 .............................. CTATTTCTCCAACAGTTTTGTCCTTGTTCTTTTCAAG 88875 30 100.0 37 .............................. AGAGAAATAGGTGTGTTTGTTAACGATAATGGGCAAG 88942 30 100.0 37 .............................. TAATATTTTTTTAAATAGCCCCCTAACTTCCCCTAAA 89009 30 100.0 35 .............................. TGAAAGAAGCAGAAAATAAAGAGGTTCATGTTCAT 89074 30 100.0 36 .............................. CAAAAAGTTAGAATATGGATAGACAATGCAAAAATA 89140 30 100.0 38 .............................. GAAAATACCTTTAATGGGTTTTATTTAGGTTCTGGATA 89208 30 100.0 36 .............................. CCAACTTTTAAAATATTCTTCCATAACTTCTCTAAA 89274 30 100.0 38 .............................. CCATTTCTATGTACTTTTGGATAACTTCAATAGCATCT 89342 30 100.0 38 .............................. TTTGTTATTATAAGACCAATAAAATCTGTACAAAAATC 89410 30 96.7 38 .............................G GTCAACAAAAGAAAATATTGTTATTCCTAATGTAGGTA 89478 29 90.0 0 .......................-AA.... | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 99.6 37 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AATCTTTTCAAATGTGGTGGTGATAAAATGTATGTAGTTGCAGTGTATGATATTTCATTGGATGAAAAAGGTAGTCATAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCATCATATTCAAAATTCTGTCTTTGAAGGAGAATTATCAGAAGTTGATATTCAAAGATTAAAATATGAAGTTTCAAAATATATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAAATGGATGGAAAAGGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTCATAATGTAAAATTACTGGAAGATTGACAAAAGTCAAAAAAGTCTTTATTTATAAATAAATTTAAGAAAATAAAAAAAATTTAAGAAATTAAATTTTTTTATTTTTTACTAAAAAACTTATATTGACAAAAAGATATTAAAAAAGTATTATATGGGAGTAGTTTTTTTAGGTAGCT # Right flank : TACAGAAGAAAGGGATTGAAAAATAAAGACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAGTTAAAAGGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTAAGGGGGAGTACATTTTTTATTGTGTTAAGTATAGCTTCATAAAGTAAACTAAGAATTAAGTATTCATAAAGTAATAGAAAAATTAAAAAAACGAAATCCAACTAAAATATTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGCGAATTTCACAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAAAGATAAATTTAAAGTTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1647621-1646983 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEQW01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1265 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 1647620 38 94.7 42 TA.................................... AAGAATGAAGCATATCTATCAACAGATAATGATTTCTTCAGA 1647540 38 100.0 33 ...................................... CCCCTAGAATAATTTACCTGGAAATTTTTACAG 1647469 38 100.0 35 ...................................... TTTGATGTATGATGATTTGATGTCGCAGTTTCCAA 1647396 38 100.0 37 ...................................... ACAATTCTTACACTATCAAGAGTACCACCAACTACAA 1647321 38 100.0 38 ...................................... TTTTTATGCTTTCTCCCATAAAATATACTCCAGCCATT 1647245 38 100.0 35 ...................................... TTTGATGTATGATGATTTGATGTCGCAGTTTCCAA 1647172 38 100.0 37 ...................................... ACAATTCTTACACTATCAAGAGTACCACCAACTACAA 1647097 38 100.0 39 ...................................... TAGATACAGCAAGATAATCCGAATAAGTATCATAGTTTT 1647020 38 97.4 0 T..................................... | ========== ====== ====== ====== ====================================== ========================================== ================== 9 38 99.1 37 AGTTTTAAACCTTGTTATAAATGGATGACCTTCAATAC # Left flank : ATAACTTTTTCAGTAATCTTATAAAGAATTTTACCAAATCTCTTTTTTGTAATTCCTATTTCATCATTAGCTTGATGTGTTTTCTCTAAATTATTTTTATCATAGACATAATATGAATATATACTATTATCAATACGTGAATCAAAGTAACTTTCACCTAAGTAATGCAAGTTTATTAACTCTTTCTTTGTTAAATTTTTTTCTTCTAATACTAAATTAATTTCTTTTAAAAATTTCTTTAATTCCACTATATATTCATCTGAATCTTTTCTCATATCTTTATATCTTTCAATTACATCTATTAGCTCCTTTACAGAATCTTTAAGTTCAATAAAATCTTCTTCTACAAAATAATTCTTTTTTCCAAAATTACTGAACAACATAGTTATTCTCCCTCTGTTACCTTTTTTCTATTGTATTGTATTTTTTATTTTAAATCAATTATTTTTACATAATAAAAAATGGAATCCTTGGATTCCATCTTCCATGATATTTAATTT # Right flank : CCTTACCAAAGGGATGAATGTCGTATTTATGTTAGAAAGAAGTCTTTTTTATATGGTGGCAAAATTTGAACATTTTTCCGTAATTCACGGATTCTTAACCTTCTATATTAAATTTTTATTACAGTTTTTTTGCTTTTTTTTAAAATAGTGAGCATTTTATTCTTTAATACAAATCTAAATATGAAATGTTAAAAAATTGACCTTATAACCTTTTTTCTACATAATTTTTTTCTTATTTTTATATTTTACAATATTTTTATTAACTTGTAAACTATAACTTATTATACATAATTTTATATTAAATTTCAATATATTTTTTTATAAAAAATGGAGTTGTTAAACTCCATTTCTTTTATATCAGCTGATATTTAATTTTTATTATGCTATATATTTTTGTATTGCTTCTAGTTCAACCTTTTTAAACTCTATATTTGTTATAGTGCTTTCAGATTTCTTTATTTGTTTTCTTATTGTTTCTATCCAAGCATCATAACTTTCAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAAACCTTGTTATAAATGGATGACCTTCAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //