Array 1 5809-5420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICC010000012.1 Wohlfahrtiimonas chitiniclastica strain DSM 108048 NODE_12_length_39518_cov_43.070155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5808 28 85.7 32 A..AG..C.................... AATCTTGTAACATTACTTTTTCACACATAACA 5748 28 100.0 32 ............................ GCTTCTACGTTTTCTCATAAGAGGCTCAAGCG 5688 28 100.0 32 ............................ ACTAAGCTTCGCAAGGGCTTCTTCAGCTTCTT 5628 28 100.0 32 ............................ TCCGACTTACTGTCAAGATCAGCCATTAATAA 5568 28 100.0 33 ............................ CATATGTGCACTTAACAAAACACTAATCATTTT 5507 28 96.4 32 .............T.............. ATTGCAGCCGGGGGAATATGATCTTCCCGTTT 5447 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATATTGTTGCTTGGCATTTTTTTCTATAACGGATTGGCTCCAAATTTTATGGAATTCGTTATAGATATGCTCAAATGAATCATTGTTATTTGTGTTTTTAGGATTTATCCTTTCAATAACAACTAATTTTCTAAGTTCATTATGTTTTGTACGTGCTTCAGCTAAAGAGATGAGTGGATATTGTCCAATAATGAATGTATCTTCTTTACCTGTATCTGGGTTGACGTATCTATATTCAAAAATTTTTGTGCCTGATGGAGTGACTTTTAAGCATAGTCCATAGCCATCATATAGGCGATATAATTTGTTTTTAGGTTTTGCATTTGCAATTTGTGTATTGGTTAATGGTTTTGAAATTCTAGCCATTTTTATACCCTTTTGAATACCCTCTAAAATTAGTGATTTATACACATTGATAGAAATGTAAGGAAACAATGTTATATTAAGAATAACGGTATATCAATTGGTGAAAGTCGCTAGGGAACGAGCGGAAACGTGT # Right flank : AGTGGTTCCATGGTGAATTTGGAAAGTTTGCGGTTCACTGACTAAAAATTGAGAGTTTATAGTAGAAAATTTTCTGAGAATTTGAGAAAAAATTGCAGAAAAAATGATAAATGTTATAGTTTGCACGATTAGATGAAATACAAGTACAAAATATAATGTGCCAACAATCATCATAAGTATAGAAAAAACAACATAATATATGAATACTAAGGAGAGTATTATGCATATGCATTTGAGTAATGAAGATCTTGATGGCTTAATTACGGAAATTACGACGTCGCAAGAGTGGATAAAAATGGCGACACATACCATTGGTCAGCAATATGATAAAGCTGCGTTAAATGACATTACTAAAAGTGTAAAAATGATCATTGGTCACTTTTTAAAAAGTGTTGGTACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCAGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCTGTGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38091-39400 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICC010000006.1 Wohlfahrtiimonas chitiniclastica strain DSM 108048 NODE_6_length_162993_cov_263.830723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 38091 27 75.0 174 .......ATG...A.C...-....T... GGTTGCGCGGTTGCAGGTGCGATTGAGCATGCGGACACTTAAGACCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGTCATTGGAAAAGGATTGGTTTTATGGCTATCAACTGCCGAAATCATGATGTTTCCAATGGCATTGTGATAGTTTTTACC T [38095] 38293 28 100.0 32 ............................ TTGCAAACCATTGATAATTAAGCAAAAAAATT 38353 28 100.0 32 ............................ GCGAGGCTATCAAGCTGTAGTGATTGATTCAG 38413 28 100.0 32 ............................ CGCGCGAAAAAGGATTTACAAACGCGGCAAAG 38473 28 100.0 32 ............................ ATTTTTTCAACTGCTCTCATGCTTTCGCTGAA 38533 28 100.0 32 ............................ AGCTGTAAAAAGCTATGGTGAGCAATTGACGG 38593 28 100.0 32 ............................ TAATGTTGAATTGACTACAGGTAAACGTTTAC 38653 28 100.0 32 ............................ GAAGAAATCTATTTTAAATCCTATTGGGTGGG 38713 28 100.0 32 ............................ TGGGCATTCCCATTTTTTGTGTTCGTAAACGA 38773 28 100.0 32 ............................ ACTTTGTTCATCTTCTCAAAACAAAACCTGAT 38833 28 100.0 32 ............................ TTCTCACTCGCAACCCAATCTTCACGACTACC 38893 28 100.0 32 ............................ GTGAACAAGATTATTGGCTCGTACGGTAACTC 38953 28 100.0 32 ............................ GATGAACGCGTCACCATTGATAAACGGTATCA 39013 28 100.0 32 ............................ TGTCTCATCCCAATTTCTTTGTCGCTGCCCTT 39073 28 100.0 32 ............................ TCTTCTCGCGCATTCATGGTGCCACGCGGTAT 39133 28 100.0 32 ............................ TAGCAAAGGGCTGTTTTGCTATGAAGGACGGC 39193 28 100.0 32 ............................ GCTTTTTTGTGACTCATCAGCCATGCCCTTTA 39253 28 100.0 32 ............................ AATCATTGAGAATTTGTCACATGTTGCAGATG 39313 28 100.0 32 ............................ ACGCAATGATTGGTTGATTCGACAAGAGATGC 39373 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 20 28 98.8 40 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAAAAAATCTCTGTGCGTATCGTCAATGAAGTTAAACACGTGAACCGCATTGTGTATGACATCACAAGTAAGCCACCTGCAACGGTGGAGTGGGAATAATTTAGTTTCCACGCATTGACATGAACATAAAAAATGGCCTAAATAAATATTAGGCCATTTTTTTTAATGATTTTTAGGAGAGTTGAATGAAAAAATTATGGATGATTACAAGCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTCAAGCATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCGCATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGCCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGACTTCACTGCCAC # Right flank : AGACCGGAGCTGTGCCATCGTAACGGGATTATGAACAGACAGTAAAATTAATGCTTTAAGTTACTCGCCATAATACGCCCAAAGCAGGACAGGTTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATCCACAACCGGGCAGCCTTGACTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTTAAAGGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGTGCTCGGATGCCCACACGGTATTTACCGAGAGAAGATGCATAACTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCTACATTGCCATAACCATGGGCGACGATGCTTTTGATCTCCGGTGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCGGAATGGCGCG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.69, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 162557-162944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICC010000006.1 Wohlfahrtiimonas chitiniclastica strain DSM 108048 NODE_6_length_162993_cov_263.830723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 162557 28 100.0 32 ............................ GGTTGATCCTGATCCACCCTCTAAGCCCCAAA 162617 28 100.0 32 ............................ TATTGCGTGGGTCAATCGTGATTAAATATGAT 162677 28 100.0 32 ............................ CAAAAACTTGCGTTTCTTCTATCACTAACAAG 162737 28 100.0 32 ............................ GACTTCTTCGCGCTTTGTTTCTAGCACCTGCG 162797 28 100.0 32 ............................ TGAGTAGAATCATCACGATCAACAGGATAAGA 162857 28 100.0 32 ............................ TCCCCCGTGTAGTAACACGGGGGACATGGTTG 162917 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTCGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCTTCCATTAAGCCGGTGCCCAATCGTGTGACGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGCAGTGTTGAGCGTTTAGCGCGCCGTTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAAAGTAAAAGTGACAGCACCCACGGAGGCTGCAAACTTTACAACGTATGGTTTGAGTCATCATGAACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGCTCTTTAAAAATTTGGATAAAAATCAGTAGCTTATAAAATAAGGAAAAATCATTGGTCTTTTCAGGTAAACTACCTGCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : TCCCCCGTGTAGTAACACGGGGGACATGGTTGGTTCACTGCCGCATAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-6082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICC010000014.1 Wohlfahrtiimonas chitiniclastica strain DSM 108048 NODE_14_length_17528_cov_65.742422, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50 28 100.0 32 ............................ CGCCTGCATTGAGTATCCCGCGCAGGTATTTA 110 28 100.0 32 ............................ AACAGGCGGGCAGCCAAATTGGCGTTACAACG 170 28 100.0 32 ............................ ATGCCCTTTAACCACGATTGGAACCCACCTTT 230 28 100.0 32 ............................ CATCCGCCAACAAAATGCTAATATTTTGCGCG 290 28 100.0 32 ............................ AATCGCATTTAAATTTATTAAATTCTACTCTT 350 28 100.0 33 ............................ CATAAGTTGTTCGCGGATTAAATCAGCGGTAGA 411 28 100.0 32 ............................ ATGGTGAATTTGGGTATCCGGCAGACTTCGAA 471 28 100.0 32 ............................ TCCAGCTCTTTCATGATAAATTTGATGTATTT 531 28 100.0 32 ............................ TTGCAACATAAAAAGAAGTGGATCTGGATCCA 591 28 100.0 32 ............................ ATCTTTGTTCGTGACTTCAACGAGTGTCTTGC 651 28 100.0 32 ............................ AAAAACCAACCTGATGGGATTGCGGTTGTTGG 711 28 100.0 32 ............................ GATATTGATTTCAGGCAATTCTTTTTCTTGAA 771 28 100.0 32 ............................ ACAGACTGATCGTGGTCAAGAGATTTTAATCA 831 28 100.0 32 ............................ TGCTGATTTCCCGTGTGATTATGACCATATTC 891 28 100.0 32 ............................ TTCATATCTAGTCGCCAAGCTGTAGTAATAGC 951 28 96.4 32 ..................T......... GCTAATCTTGGCTAAATCCATCGGATTATGAA 1011 28 100.0 32 ............................ AATAGGCTTATTAAGTGGTCATCATCTGGATT 1071 28 100.0 32 ............................ AATTCTTTGTGATCGAGTGGTTTTACAAATGT 1131 28 100.0 33 ............................ ATTGACAGGTAAGCGTGTCGATTTAGGGATTAT 1192 28 100.0 32 ............................ AAAATCGTTAGCAGTGTCGATATTAAAAAAAT 1252 28 100.0 32 ............................ AATATTGACATCGTTAAATCTGCATTAAACGT 1312 28 100.0 32 ............................ CAATGGCCACGCTTTTACACTTGAAGATAATA 1372 28 100.0 32 ............................ TTTCTTATCGAGCATTTGCATCACGCCGCCAA 1432 28 100.0 32 ............................ TGGTGTTGTCGTCTAACTTAAAAGGAGTTTAG 1492 28 100.0 32 ............................ ATCCGGTGAATACCCAAAGCTTTTGCCAGCTT 1552 28 100.0 32 ............................ ATCAAAAATTTATTTACATTATACAGCGTCGG 1612 28 100.0 32 ............................ AACAAAGGAATTGCGCCACATACCAGCTTTTA 1672 28 100.0 32 ............................ TTCTTTGTGATCGAGTGGTTTTACAAATGTTG 1732 28 100.0 32 ............................ ATGGGATGGATTCAAGATAAATTTAATGCGTT 1792 28 100.0 32 ............................ CATAAAGGCGCCCGCGCCCGTAGCGTGGTCAA 1852 28 100.0 32 ............................ GACTGGCGGCACGCGCAAATTAGCAGTGCCAG 1912 28 100.0 32 ............................ AAAATCAGAGCCAAACACATGGGACTATAAAG 1972 28 100.0 32 ............................ AATTTAATGGTATTGGTTCAACCGCAGGACGT 2032 28 100.0 33 ............................ CTTAAGCATCACCGATGTAGCTAGGCATTACGG 2093 28 100.0 32 ............................ CAATTGACCTGCTCAATCTTGAGAAGTGGAAA 2153 28 100.0 32 ............................ ATGCAGCTCATGAGTTTCGTGTATATGCCAAA 2213 28 100.0 32 ............................ CGCAACACTTTTGCATGCGCCCTATCTCTATC 2273 28 100.0 32 ............................ AATGAAGGAGGTAATCAGTAATATTGATAGCA 2333 28 100.0 32 ............................ TAGTGCTTCACGCTTTAATAATGCATCAAGCT 2393 28 100.0 32 ............................ GAGCTAATGGGGCGATTGACATCAATGCGCAA 2453 28 100.0 32 ............................ TGTGCGTTCTGCAAAAATGTCCACAATGATCT 2513 28 100.0 32 ............................ GTAGCACCTTTGGCGGCTGCTCCTAATGATGC 2573 28 100.0 32 ............................ ACAATGATCTGTGGCGGCTCTAATAAGTTTCC 2633 28 100.0 32 ............................ TGATTACAAAAGTTTGTGAGCGTTGCTTCTCT 2693 28 100.0 32 ............................ AACCAGGTCAAGGTGCTTTGCGTTCATATTTT 2753 28 100.0 32 ............................ TGCAGATCAGGCTGTTTTATTACTTCCATTTA 2813 28 100.0 32 ............................ CGCCGCCAAAAATACTTATCAACGGGAAAATA 2873 28 100.0 32 ............................ ACTGAAAAGCAAATGGAATGTATCCATACTGA 2933 28 100.0 32 ............................ ACCAGATCCAACGGGCAAAAAGCCCAGATATG 2993 28 100.0 32 ............................ ACAACTTCTCCACTATTTTAAGTTGTGAAAAT 3053 28 100.0 32 ............................ TTTCGATAATTAATCCAAAGCTCATACTACCT 3113 28 100.0 32 ............................ AGTAGGAGTTTTTATGGGCATCGGTTTAATTG 3173 28 100.0 32 ............................ TCCTCAAGATCACCAACCAAATACCAATCAAT 3233 28 100.0 32 ............................ AGCGCTTTGCCGTTCAAGTTGATGTCAATCTT 3293 28 100.0 32 ............................ GCGCGCGTGTGTTCGGTGGATGTGCTGCATTG 3353 28 100.0 32 ............................ TTAAATTCACGAGTCGCTTTAACAGTCACACT 3413 28 100.0 32 ............................ TCTTTAATCATCGCGTCTTTATCAGCCTTTCC 3473 28 100.0 32 ............................ AAAGATTTAAACATAGCAGTCAGTACAGTAAA 3533 28 100.0 32 ............................ ATTTACGATCTCGATTTGGTGTGACGCTCTAA 3593 28 100.0 32 ............................ TAATGATTGGATCTCACTCATAGCACCTTTTG 3653 28 100.0 32 ............................ ACCTATTTTATTTAGCGCAATAAAAAAGCGCC 3713 28 100.0 32 ............................ AGCTTTGTCATACTCTTTCTCATAGTCTTGAC 3773 28 100.0 32 ............................ GAGCAATGTTTTTTCTGATTGCGTTAAGTCTG 3833 28 100.0 32 ............................ AACCCCGCTGCCCAGCTTATGATACCAAACAT 3893 28 100.0 32 ............................ ATTTTTGAAGAGCCAAACATCGCCCTCTAAAT 3953 28 100.0 32 ............................ CTTCTGGCTCACTGATCGTATGACATTGACGT 4013 28 100.0 32 ............................ GCATTGACCACCACTGTCTGGGTTTGCGGTTA 4073 28 100.0 32 ............................ ACGAGGGAATCTGATCACGGCCCGACACCCAT 4133 28 100.0 32 ............................ CGTGGTGAGTTTAAAGTTTTTAACAACGATAA 4193 28 100.0 32 ............................ TTGATCTGTCAAAACGCCGCCCGAATAATTGA 4253 28 100.0 32 ............................ GATTGTTAATGGTGTAGCGTTTGACTCATGGA 4313 28 100.0 32 ............................ ATCATGGGCTTATTAGGAATGAAGATAAACAA 4373 28 100.0 32 ............................ ATAAAAATCTCCTACTGGATGCCGTCGCCGAA 4433 28 100.0 32 ............................ GCGATAAAAATGCGTATGCTCCCCAACTAGTT 4493 28 100.0 32 ............................ CTGTGGGCGTTTTGGTTAGTGGGTTGTGCTGC 4553 28 100.0 32 ............................ ATATATCAAAGGCATGGAGGGTTTTGTGGGTG 4613 28 100.0 32 ............................ GGCACCTGTACTGTGATCAATATCAGCATAAA 4673 28 100.0 33 ............................ AGGAATCACCGAACGCGTAAACCACAATCCTTT 4734 28 100.0 32 ............................ GCGAACTTGCGCAAAATGCCATCACCTTGTTG 4794 28 100.0 32 ............................ TAATGATTTTGGTTTGATGATTTCGGAATACT 4854 28 100.0 32 ............................ TCTTAAAATCAGACATTTTAGGGTATTCATGT 4914 28 100.0 32 ............................ AACAATTTTCAATCAAGTGAAGATTTGAGCGC 4974 28 100.0 32 ............................ GATTGCGCTAATGATCTTGCTCATGATTGCTT 5034 28 100.0 32 ............................ GAAATTCCAGAATATATAACTGCACCGACACT 5094 28 100.0 32 ............................ AGCAGCGAAGCAAGTTCGCGAATCTGCATATT 5154 28 100.0 32 ............................ TTCGGGTGCTGCCCTTTTTTGTGCCCTAAGTT 5214 28 100.0 32 ............................ CATCCCAGCCGTGGCACCCATATAGCCAATTG 5274 28 100.0 32 ............................ ATCCACAAACTCGTGATTGTAAGAAGGTGGGG 5334 28 100.0 32 ............................ TTGTTAAAGTAAACCCCTTGGGGCGCATGTAT 5394 28 100.0 32 ............................ CTAATTGTTTGAGTGGCATTTTAGCAGATTCA 5454 28 100.0 32 ............................ TAGCCGTCAGCCTTACCATTATCAAACGAACA 5514 28 100.0 32 ............................ TTTATGAACATTTCTTCTCCATCACAATCAGA 5574 28 100.0 32 ............................ GCAAGCAGGTGCACAAGGTACAGGTGGATTTA 5634 28 100.0 32 ............................ TTCTAACTCTCTCTGCTGATGACGTTTCAGAG 5694 28 100.0 32 ............................ TCTAAACTTCAAATCCCCGCGCAGCTTGATTG 5754 28 100.0 33 ............................ GCGTTGATCTACTGCAATATCTCTATTTGAATC 5815 28 100.0 32 ............................ AATACCAGCTTTAAAGCAAAATCCTGAGCAAT 5875 28 100.0 32 ............................ GTCAGAAAACTTATCGTTAGTTACAGCTCATG 5935 28 100.0 32 ............................ TTTATAGCGAACCATCTCGGAATCCGCTACAA 5995 28 100.0 32 ............................ CCATTATTGTAGGGCGTTGTTTTTATTAACTA 6055 28 82.1 0 .............C...A..T..T..T. | ========== ====== ====== ====== ============================ ================================= ================== 101 28 99.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CATAGGCAGCTTAGAAATCCCCCGTGTAGTAACACGGGGGACATGGTTGG # Right flank : ATTGAATTAAGCTATTGATTTTTATCTAAAAAATAAGGGTATATTTTTAATATACCCTTATATGTACCTTTATTTCTGAGAATCAACCCATTTTTTTATATCAGACAATCTCCAACGTGAAGATGTACCAAATTTTATTGGGGCAGGGAATCGCCCCTTTTGAATGGCTTCATAGATCCATTTCTTATTAAACCCTATGATATTTGATACATCTGAGATTCTTAAAAATCGGTCTGTCTCCAAAGGCTCATCTTCAGAATTTAATTGATAGATGATATTTTGTACCATTGCTTCAATGTTTTCAATTCTCTTTGATGAATGAGGATCGAGTTGTACTTGAATCGTTGTCATATACTCTCCAATCAATAATTTTTAGGCAAACAGCTCAATTTGTGATTGTTTGAGCAATTTTGCTTGTTGTTCTTTAGCAGATATTTCTGCTAATCGTTTTGCTTGGTTACCACTTACAACATCAACAAGGTGAGCAAAGTTTACAGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //