Array 1 1768006-1769494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031477.1 Haemophilus parainfluenzae strain M27794 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1768006 35 91.7 30 A.G.....-........................... GCCTAAAATCAGATCCAAACTGTTTAAGGC A [1768009] 1768072 36 100.0 30 .................................... ATCCGATAATGCCAACTCAAAAGCGAAAGA 1768138 36 100.0 30 .................................... TCAATTCTGTCGTTTCTATCCGTTAACATA 1768204 36 100.0 30 .................................... ACATTGCGGAAGTGTTCGCGTTGGCGTTTG 1768270 36 100.0 30 .................................... CAGCCAATCTCAAACGAGCAAGCGGCGCAC 1768336 36 100.0 30 .................................... CATAAACCATTCCTAAATGTTCACCGTTAT 1768402 36 100.0 30 .................................... GCGCTCGGATCTTTTCTTCGAGCTCTTCTT 1768468 36 100.0 30 .................................... CTTTTGGGTCATCATAAGTCTTAAGTTGTT 1768534 36 100.0 30 .................................... TCGCCGCAGACACACCCCAAAATCCGATCT 1768600 36 100.0 30 .................................... TCGCCGCAGACACACCCCAAAATCCGATCT 1768666 36 100.0 30 .................................... GAATATGTGTGTTTTGAGCATACAGGTTAT 1768732 36 100.0 30 .................................... GAAAGCGTTTTCCATAGGTTGATTCAATGA 1768798 36 100.0 30 .................................... TTTTAACATAATCAATTGAGCCAACATGTA 1768864 36 100.0 30 .................................... AGAACCACCGACAAAGATCAACACAAAAGG 1768930 36 100.0 31 .................................... TTACATCTCTTATGGCGTTATTTATGGCATC 1768997 36 100.0 30 .................................... AAATCAATTTGCGATAGGCGTAGTAGATGG 1769063 36 100.0 30 .................................... TCATCAAGATGGTGAAAATGATATAAAAAT 1769129 36 100.0 30 .................................... TTTTCCATAATAAGATCCTTTTGTTGATTA 1769195 36 100.0 30 .................................... CCAACATTGATACTTGCCTACAATAATTTC 1769261 36 100.0 30 .................................... TGGTGCGGTGTATTTAATTGAACCGATTGA 1769327 36 100.0 30 .................................... TGTAAATCCGTTCTTCAATGTGAAGTTTAT 1769393 36 100.0 30 .................................... TAAAATTCCGCATATTCTTTTTCTACACTA 1769459 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.6 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : TTTGATTTAATGCAGGAAACCTTGCGCATCACCAATCTCGGCAGCTTAAAAGCAGGGGATTTTGTGAATATAGAACGTGCAATGCAAATGGGCGCAGAAATTGGTGGGCATATTTTATCTGGCCACGTTTATTGTACCGCAAGCGTTTCACAGATTATCGAAAGCGAAAACAATCGTCAGGTTTGGTTTAAATTACCTACTAAAGACGTGATGAAATATATTCTTACGAAAGGATTTATCGCGATTGACGGCATCAGTCTTACTATTGGTGAAGTGAAAGACGATGAATTCTGCGTGAATTTAATTCCAGAAACCTTACACCGAACACTTATCGGTAAGCGTCAAATTGACGATTTAGTGAATATCGAAATTGATCCGCAAACACAAGCGATTGTGGATACAGTGGAGCGGTATTTAGCAGCTAAAGCTTAATTAGAATAAAAAAAAGTGCGGTAGAAAACAATATTGTTTTTTGCCGCACTTTTTATTCTTCCGAAGGA # Right flank : TAGGGACAGCAAAAAGCCCCGTGCCACAAGGTTTAGGGGCTTTTGTTTTGCCTAAAAAACGGCTAAAAAAGCAGTAATTGATTTGAATTAACCTTTTTTTCTTGTGGTTTTTTCTCTCCCACTAAAATTTCCATGCTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATAGCTCCTTCTTCAGGTAAGTGTGCGACGAGTCTTTTATGATGTTTTTCTAACGCGTCTCGTCCTTTAATAATTCGAGTGTAAATAGAAAGTTGCAACATTTGATAACCATCTTTAAGTAAAAATTGACGGAATTGGTTTGCAGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCGAATAGCACGATCATACGCATAAATACCTCCTCACTCATATTGATATTCCTGCAATGTATCGATCTCGGGTAACTGCAATAATGCTGCATTTTTTTGAATAAGTGCAATTTGTAAAGAAGCAATAGCTTTATCAATAGCAGTTAATACAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //