Array 1 1118-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNG01000138.1 Flavobacterium psychrophilum strain KTEN-1510, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 1117 43 93.5 30 ---........................................... AACTTTTGGGCGCAAGTGAATGTAGGCATA 1044 46 100.0 30 .............................................. AACAATAAACGAGAGTCGAGAATACTTAGT 968 46 100.0 29 .............................................. ATAAAAAAGAAATAGAGAGTATAGATAGT 893 46 100.0 30 .............................................. TTTTTTTAAAAACAGATAAAGAGCAACTTC 817 46 100.0 31 .............................................. TGATGTTGTGGTTTATGATTTTGGTGATAAT 740 46 100.0 30 .............................................. ATAGAAGATCAGCAAGAACTAGATAGTTTA 664 46 100.0 30 .............................................. TTTAACGTTATGGTGCATTAGCAAAAAATA 588 46 100.0 30 .............................................. TATCTGTTTGTTTGGTATCATTGCGGGTGC 512 46 100.0 30 .............................................. GTTTATAAATGGAATGTATTTTAAAGTTCC 436 46 100.0 29 .............................................. TGTACAATTGTTCATTTTTGGTCTAGCAA 361 46 100.0 30 .............................................. AAATATGCTTTCGTTTATGCCGACTAAAGC 285 46 100.0 30 .............................................. TTACATACATAATCAATGGATATGGTTGTT 209 46 100.0 30 .............................................. CCTGAATAGATTCTTTTCCGTATTGTTTTT 133 46 100.0 30 .............................................. TCAAAGAATATAAAGACGCTAAAGATGCTG 57 46 100.0 0 .............................................. | T [28] ========== ====== ====== ====== ============================================== =============================== ================== 15 46 99.6 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : | # Right flank : CTCACGATGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [10.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 24-752 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNG01000156.1 Flavobacterium psychrophilum strain KTEN-1510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 24 46 100.0 30 .............................................. TTGTCCATTCTAGCAGGTAGTAGAGATATA 100 46 100.0 30 .............................................. ATTTCTTCATTAAGAAGCCGCACGTTAATA 176 46 100.0 30 .............................................. AAGTCGTGAATAAAGATATACACGACCCTC 252 46 100.0 29 .............................................. ACTATGATTTTAATAATCGGATTACCTGC 327 46 100.0 30 .............................................. TTTGAAATCTTTTCTTGCTTGTTCAGTTAA 403 46 100.0 30 .............................................. GGATAAATAGTATACGGCAAATCTAACTGA 479 46 100.0 30 .............................................. CCATTTGGGAAGCACAATTTGGCGATTTCA 555 46 100.0 29 .............................................. TAATTTAGAATTTTCATTTTCCCTCATGG 630 46 100.0 30 .............................................. TTATTGATACCTTATTTGAATCTACTTTTA 706 46 100.0 0 .............................................. | A [722] ========== ====== ====== ====== ============================================== ============================== ================== 10 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTGAAATGGGTGTAGATATTCTTG # Right flank : GCGTACTCACAAGGGAAGATTCATCCAACAGTTGTGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 579-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNG01000169.1 Flavobacterium psychrophilum strain KTEN-1510, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 578 45 97.8 29 ...................-.......................... TAGATAAAAGAACCTTTTGTTCGTCTTTT 504 46 100.0 30 .............................................. CTTTCGCAAAAGGAGTTGATTCAAAAAATG 428 46 100.0 30 .............................................. AGAATAACAAGAGATACTAATACATCATTT 352 46 100.0 30 .............................................. CTATTCATTGAATAAGCATTGAAGGTATCA 276 46 100.0 30 .............................................. TTGATGACTGGGAGAGCCATTATGACGTAG 200 46 100.0 29 .............................................. ACATTACAATATAATTACGGCTTTGAATA 125 46 100.0 30 .............................................. TTTGCCCAACAGACCCTTCTCCTAATTCCG 49 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 8 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : GTTGTACATTG # Right flank : CATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 88947-89541 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNG01000003.1 Flavobacterium psychrophilum strain KTEN-1510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================================== ========================== ================== 88947 43 100.0 26 ........................................... CCGAAAAAAGCACCTTCCTTAATAGT 89016 43 97.7 26 ...T....................................... TTGAGAAAAGCCTCATCTCCAATAGT 89085 43 100.0 26 ........................................... CGGAAAAAAGCACGATCCTTAATAGC 89154 43 97.7 26 ..........................................C CCTGCAAAAGACCCTTCTCCGATAGT 89223 43 100.0 26 ........................................... TTGGAAAAAGCATTTTGATTAATAGA 89292 43 97.7 26 ..................G........................ TTGGAAAAAGCATTTTGATTAATAGA 89361 43 97.7 26 ..........................................C TCTGCAAAAGCCAGATCTCCAATATT 89430 43 100.0 26 ........................................... CCGAGAAAAGTAGCTCTATTAATAGT 89499 43 97.7 0 ...T....................................... | ========== ====== ====== ====== =========================================== ========================== ================== 9 43 98.7 26 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : GGTTAGCCGTTTGAAGCTAACCTTTTACTATGTAAAATGTTTTTTTTAAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGGTTTGTAATTACTTCTACAAAATAATTCCCTTTCGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTGTAATTGTAAGCCCTCTTGTAAGGCTATGTTTAAAATTTCTGAAACAGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACTACCAGAAATAGGACTGAAATTTCTCCAAACCGCTGCTGCCTGATAAGCGACTTGTGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGGGTAACAGCATCGAAGACATCTTCATTAATAACTAAAGGGCTTGTAATATGACAATTTACTGTCCTTAAACTGCTACAGCCTGAAAAAGCCACATCTCCAATATT # Right flank : CCGAGAAAAGTAGCTCTATTAATAGTAGTT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : AGTTACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1-340 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNG01000075.1 Flavobacterium psychrophilum strain KTEN-1510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1 36 78.3 30 ----------.................................... TCAAAGAATATAAAGACGCTAAAGATGCTG 67 46 100.0 30 .............................................. TCACGATGTATTTAGAAAATATGGTTATCC 143 46 100.0 30 .............................................. TGCTTGTAGTAGCTGTTAGTGGCATACCAC 219 46 100.0 30 .............................................. CGCAAAAATATTATTACTAGGAGCAATCCT 295 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 5 46 95.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : | # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //