Array 1 1566443-1563836 **** Predicted by CRISPRDetect 2.4 *** >NC_017737.1 Helicobacter cetorum MIT 00-7128, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1566442 37 100.0 41 ..................................... GCTATTATGCAATACGCATTTATCAAATGCTTTTAAGCGAA 1566364 37 100.0 45 ..................................... TTATCCTAAAATTTCACAAATTTTTAATCAATTCACGCCTTTAGA 1566282 37 100.0 44 ..................................... ACAACAATGTCTCAATGCCAAGAGCTACAAAATAAAATTTGTGA 1566201 37 100.0 40 ..................................... GTTTTATAATCCGTTCTAACAAAAACATTACTCATAATAA 1566124 37 100.0 39 ..................................... CTTGGAGTGCATTGGCGCATAGTGAAGGCTTTTTAGCAA 1566048 37 100.0 41 ..................................... GAAGATAATTACTTTTCTCTACGTTTTTAATATAAACTCCA 1565970 37 100.0 42 ..................................... TACTCTTCATCTTTGTATTTTCCAACATTGAATTTAATATAA 1565891 37 100.0 44 ..................................... GCTTTTTGTTGATTACTGCATTTTGCAAAGTTTAGTGGTTGGTC 1565810 37 100.0 44 ..................................... GCTTTTTGTTGATTACTGCATTTTGCAAAGTTTAGTGGTTGGTC 1565729 37 100.0 40 ..................................... GAACACCTACTTATAATTTTAACCATCAAGGTAACCCATT 1565652 37 100.0 40 ..................................... GGCACTTATGTGAGTGCGGGCATGATTTTAGTGGGTAAGA 1565575 37 100.0 40 ..................................... TTTTAAGACACTTAATCTTTTCAGCATGTTATTATATTGC 1565498 37 100.0 40 ..................................... ACTATTTCCCTATTAGCTCTCTGCATGATAAGTATGAGAT 1565421 37 100.0 43 ..................................... ATAATTTATTTTTCTAATAGGCAAAACCTCTCTTAAGTAATTT 1565341 37 100.0 39 ..................................... CTCTTTACCTTTATCTTTAGTGAAGAACTTATAAGCTCT 1565265 37 100.0 43 ..................................... GCAATTTAAGTCAAATCTCTATAAGAACCTATCTCTTATAGTA 1565185 37 100.0 40 ..................................... CCCTTCTCCATAGGATAATTATGATCAGCCATTAAAGCAA 1565108 37 100.0 40 ..................................... TGTGCTTTTATGAAGGTCAATGTGAATGTAAATATGAGGA 1565031 37 100.0 41 ..................................... TTAATTTCAGCTCTACTAACGTAAATCTTCATTGAACTATC 1564953 37 100.0 39 ..................................... TTGCCAAGCTCACGTTATTATTGGTAAAGATAAAGAAGG 1564877 37 100.0 39 ..................................... TTGCCAAGCTCACGTTATTATTGGTAAAGATAAAGAAGG 1564801 37 100.0 40 ..................................... GCAATTTTGGATATTAGCTAAAGCAGCTCTTCTTTCTTTA 1564724 37 100.0 37 ..................................... TATTTTTTGGTGGATTTAAGTGCTTGATGCTTTTAAA 1564650 37 100.0 40 ..................................... CTAATGAGAAATCAAATTCTGATAACTTCTCATTGAACTC 1564573 37 100.0 41 ..................................... TGGGTTATAGAGTTATCTTAATCAATTCTAATCCAGCTACC 1564495 37 100.0 40 ..................................... AGAATAACTCAAAATATTATTAGCAATTTCCTCTATAGAA 1564418 37 100.0 38 ..................................... ATGCAGGGATTATTCGCATTGTGTGGCGACTTTTTTAG 1564343 37 100.0 40 ..................................... GCGATTTCCTCATTCTCTTTCTCTTGAGAATTATAGTAAT 1564266 37 100.0 42 ..................................... ATTAACTTGATGGGTTGTTCTTTGAGGCTGTTTAGAATATTT 1564187 37 100.0 45 ..................................... CTTAATATAATCGCTTTCTGGAGAAGATTGCATTTGATATTTTAA 1564105 37 100.0 44 ..................................... ATCAAGGCATTAAGTATGAGCCAGAAGAGCCTATTCTATTTGAA 1564024 37 100.0 39 ..................................... AGAGTAGATTATTTATCATCATAAGGATATTCATACTGA 1563948 37 97.3 39 ....................................T TAATTATTTAGACTTCTTACTAGCGAACCCCTAAGATGA 1563872 37 97.3 0 ................................T.... | ========== ====== ====== ====== ===================================== ============================================= ================== 34 37 99.8 41 ATTTATTACAGATTGACCCGTTCAAGGGGATTGAAAC # Left flank : AGCTTTGAGATTGGCGAAAAACGAGGTATTTTTAAACCCTATGATGATTTCATTTAAACACTTAATGATTGCCAAAATGATTTGCAAAATGACAAAGGGTTTTTGCGAACTTTTTAAGCTTTGTTTGCAAGCTTGTGGTGTAAAATAAGAGCATTTTAACCTAAAGTATTATATTTTATGATTTAGAATGATAGGCTTTTGCGAACTTTTAGTTTTGATTAAGTTTTAAAAGGCGCTCTTTAGGGGTTTATGAACTTTAAAATAGGCTTAAATTTCTCAAATCATTGCAAAATAAGCTTTTTATGCCTTTAAGCTTCGCATTAAGAGGCTTAAAACTTTCGTATTTTAGGGGGTCTTTGAAAGTTTGTTGTTGATTAATTGGCAAAACTTTTATCTTAAATAGGGGGATTTGCGAACTTTTTCTAAAAAGCTCGTATTTTAGGAGGATTTAAGGGATTTTTGAATAGAATCAAAAGTCTTTAAACTCTGTGATAAAGGCT # Right flank : ATGAAATATTTAAGCAATTTTTAAGGAAAATTACATTTTAATCACGGCTAAAGATTTTTTTGTGTTGATGAGGCTAGGTTTTATTCATTGGTATAATCAACTATGCATAATGTTAAATAAAGCCTTACTTATAGTTGGTTTAGTTGTTAAATCAACTAGATAAAAATGATTATAGAATATTGTAATATAGTAGGAGTTGTATGACTTCTATTTACTAATTTTATCTTTTATTGTTAAGGAGATCCTATGGGAATTTCGGGAAGATTTGGTTAGTAGTTCTATTATTGAACTTATTTGGAAATAGTTTAATGGCCGATGGTTTCAGTGTTAATGTGAATACTAATACTATTGTTTTAGAGATTATAAAAGATTTTCATGAAGATGGTCTTTATGATAAAATCGCTAATAAGTTACTTAGTAGGTTGGCATTAAATATTGATGAATATGAGAGCACTTTGGATTTCAATATCTATAGCAAGGGGAAAGTTAATTTTGACTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATTACAGATTGACCCGTTCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //