Array 1 2705305-2704909 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP070572.1 Proteus mirabilis strain PM52808 chromosome, complete genome Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
2705304 29 89.7 31 ....................A......GA CCGCCACCTATCGCAGCGCCCCATGGACCAC
2705244 29 96.6 32 ....................A........ TTGTATCGCTTTCACTTTGTCATTCTGGCTTA
2705183 29 100.0 33 ............................. AGGGTCTGGTACCAAAATGATCCGCAACTACGC
2705121 29 96.6 32 ....................A........ TTGTATCGCTTTCACTTTGTCATTCTGGCTTA
2705060 29 100.0 33 ............................. AGGGTCTGGTACCAAAATGATCCGCAACTACGC
2704998 29 100.0 32 ............................. AGACTGCAGACGCGCACCGGTAGCAGTTTCTA
2704937 29 86.2 0 .......................A..TTA |
========== ====== ====== ====== ============================= ================================= ==================
7 29 95.6 32 GTGTTCCCCGTGTATACGGGGATGAACCG
# Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGTATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCTCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA
# Right flank : TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGCTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT
# Questionable array : NO Score: 5.69
# Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.85,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG
# Alternate repeat : GTGTTCCCCGTGTATACGGGAATGAACCG
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.78,5.14 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 2715040-2714218 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP070572.1 Proteus mirabilis strain PM52808 chromosome, complete genome Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
2715039 29 100.0 32 ............................. AAATAGAACGTATCGCAGCTGTTATTTCTGTT
2714978 29 100.0 32 ............................. TTGATTACGTTTCTCTCAGCAAAACAGAAAAA
2714917 29 100.0 32 ............................. CGTTAATGACTTTAGATGTTTATAACCGTTTA
2714856 29 100.0 32 ............................. TTTTACAATGTTTTATTAAATGGTGTTCGACT
2714795 29 100.0 32 ............................. GTGTAAACCGCATCTTGTTCAGGGATTTCTTT
2714734 29 100.0 32 ............................. AATGCGCAGACGACCTTTTAAGGCTTGGTTAT
2714673 29 100.0 32 ............................. GGGAACCGTTCCGCTTTGCCATCTTATTTGCA
2714612 29 100.0 32 ............................. TATCGAATATTCACAGGTTGCATTGATTGCAG
2714551 29 100.0 32 ............................. TATCGAATATTCACAGGTTGCATTGATTGCAG
2714490 29 100.0 32 ............................. GTGAAATGATTGTTCGCAATGATATCCGAGGC
2714429 29 100.0 32 ............................. CATCTTCAAAGACTTTCTGACTGTATGGCTGA
2714368 29 100.0 32 ............................. CGAACGTGATGACCAAACACATGTACACACCA
2714307 29 100.0 32 ............................. AATGGGCTGAGGACGAGGCAATGAACAATGAG
2714246 29 96.6 0 ..........................T.. |
========== ====== ====== ====== ============================= ================================ ==================
14 29 99.8 32 GTGTTCCCCGTATGCACGGGGATGAACCG
# Left flank : TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA
# Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATGTTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCAA
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.37,5.28 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//