Array 1 2705305-2704909 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP070572.1 Proteus mirabilis strain PM52808 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
   2705304	    29	  89.7	    31	....................A......GA	CCGCCACCTATCGCAGCGCCCCATGGACCAC  	
   2705244	    29	  96.6	    32	....................A........	TTGTATCGCTTTCACTTTGTCATTCTGGCTTA 	
   2705183	    29	 100.0	    33	.............................	AGGGTCTGGTACCAAAATGATCCGCAACTACGC	
   2705121	    29	  96.6	    32	....................A........	TTGTATCGCTTTCACTTTGTCATTCTGGCTTA 	
   2705060	    29	 100.0	    33	.............................	AGGGTCTGGTACCAAAATGATCCGCAACTACGC	
   2704998	    29	 100.0	    32	.............................	AGACTGCAGACGCGCACCGGTAGCAGTTTCTA 	
   2704937	    29	  86.2	     0	.......................A..TTA	|                                	
==========	======	======	======	=============================	=================================	==================
         7	    29	  95.6	    32	GTGTTCCCCGTGTATACGGGGATGAACCG	                                 	       

# Left flank :   AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGTATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCTCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA
# Right flank :  TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGCTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT

# Questionable array : NO	 Score: 5.69
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.85,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGTGTATACGGGGATGAACCG
# Alternate repeat :   GTGTTCCCCGTGTATACGGGAATGAACCG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-9.70,-10.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [4-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.78,5.14   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 2 2715040-2714218 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP070572.1 Proteus mirabilis strain PM52808 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   2715039	    29	 100.0	    32	.............................	AAATAGAACGTATCGCAGCTGTTATTTCTGTT	
   2714978	    29	 100.0	    32	.............................	TTGATTACGTTTCTCTCAGCAAAACAGAAAAA	
   2714917	    29	 100.0	    32	.............................	CGTTAATGACTTTAGATGTTTATAACCGTTTA	
   2714856	    29	 100.0	    32	.............................	TTTTACAATGTTTTATTAAATGGTGTTCGACT	
   2714795	    29	 100.0	    32	.............................	GTGTAAACCGCATCTTGTTCAGGGATTTCTTT	
   2714734	    29	 100.0	    32	.............................	AATGCGCAGACGACCTTTTAAGGCTTGGTTAT	
   2714673	    29	 100.0	    32	.............................	GGGAACCGTTCCGCTTTGCCATCTTATTTGCA	
   2714612	    29	 100.0	    32	.............................	TATCGAATATTCACAGGTTGCATTGATTGCAG	
   2714551	    29	 100.0	    32	.............................	TATCGAATATTCACAGGTTGCATTGATTGCAG	
   2714490	    29	 100.0	    32	.............................	GTGAAATGATTGTTCGCAATGATATCCGAGGC	
   2714429	    29	 100.0	    32	.............................	CATCTTCAAAGACTTTCTGACTGTATGGCTGA	
   2714368	    29	 100.0	    32	.............................	CGAACGTGATGACCAAACACATGTACACACCA	
   2714307	    29	 100.0	    32	.............................	AATGGGCTGAGGACGAGGCAATGAACAATGAG	
   2714246	    29	  96.6	     0	..........................T..	|                               	
==========	======	======	======	=============================	================================	==================
        14	    29	  99.8	    32	GTGTTCCCCGTATGCACGGGGATGAACCG	                                	       

# Left flank :   TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA
# Right flank :  ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATGTTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCAA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGTATGCACGGGGATGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-9.70,-10.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.28   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//