Array 1 5365-3812 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFC01000050.1 Hyphomonas pacifica strain C76AD contig40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5364 32 100.0 34 ................................ AACGGCAAGGACAGGCCCGTCGAGACAATCGTCT 5298 32 100.0 34 ................................ ATCGTTATGCATTACACGGCAGGACCGGATGCTG 5232 32 100.0 34 ................................ ACGCTGAATACGGCCAGACGCTGGCTGGATTGAG 5166 32 100.0 34 ................................ GGCCTTGTACGTGCTTGCAATCAAATCCGTGGAC 5100 32 100.0 33 ................................ AACTCTTTCCCGGACTGCTTGTCGTGCTGGAGC 5035 32 100.0 35 ................................ GTGAGCGGTGATGTGGCTGACAACCTGCCGGGCAA 4968 32 100.0 33 ................................ CTCCAGCTCAGCAATACGCTGGCGCATCTGTTC 4903 32 100.0 34 ................................ AAGACCCAGCGCGGGTGACCGGACTCCGGCACCG 4837 32 100.0 34 ................................ AGTATCCCGGCCATGCCGCCCAGCGCGCAGGAAA 4771 32 100.0 34 ................................ CCTGTGCACTTGGCATCATCAATCAGGAAGTGAA 4705 32 100.0 35 ................................ CTTTCTCGATGGGTCGTTTATCGATGCGGCGCCGG 4638 32 100.0 34 ................................ CATCCATGGACATTGTGCTGTAGTGGGCGCTCGG 4572 32 100.0 34 ................................ AGTCTTGGTCATGGGTGGGCTCCATTCTTTCAGC 4506 32 100.0 34 ................................ AGCAGCTCAGCTGCATGCTGGTCGACGAGGACGT 4440 32 100.0 34 ................................ AGGAGGTCACGATAACATCGCTCGTCAGCGAGTT 4374 32 100.0 35 ................................ ACCTTGAACCCCGTGCGCTGGCAGTAGCCGTAAAC 4307 32 100.0 34 ................................ TGTGGTCCAGAGCATTGCAGCAAGCGCGGCTGGA 4241 32 100.0 34 ................................ TTCCTTGCTGGGTCACGTACTGAGGTGCCCGCTG 4175 32 100.0 35 ................................ ATGCACGACAGTGCGGACACGGGCGAATGGCGCGT 4108 32 100.0 34 ................................ CGCCGCTGACCAGAGCCGCTTCGGCGGCTCACCC 4042 32 100.0 35 ................................ AAATTGCTCTGAGTGGACAGACAAGGCGACGGCAG 3975 32 100.0 34 ................................ TTCTCCATGCGGGCAATGACCTGCGTGACGTGCG 3909 32 100.0 34 ................................ AAGAGCATGGCGACGAGATGATCCAATGTTACGC 3843 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 24 32 100.0 34 GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC # Left flank : TTCTGCCATGATGGTTCTGGTCACGTACGATGTGCGCACTTCAACTCCTGGCGGCGCGCGGAGGCTCCGGCGCGTCGCGAAAGCTTGCCGGGATTTCGGACAGCGGGTGCAGTTTTCCGTGTTTGAGATCGAGGTAGACCCTCACCAATGGGTGACGCTGAAGGCCAGGCTGGAATCACAGATTGACCCTTCGGAAGACAGTCTCCGATACTACTATCTGGGCGCCAACTGGGAACGTCGGATCGAACATTTTGGCGCGAAGCCTACAGAGGACCTCAACGGCCCCCTCATTATCTGATCCCAAGACGATCCGGATGTGCAGCGCGAACCTGAATCGTGTCGAGGATTCTTGCCAGGTTCGTACCGCATCTAGACCGTTGGCGTTGTTTGACATTGTGAATGATTGAAATGATCGCGTCTGTATGTTGGGTGCAAATTTCGGTGTGTTCGCGGAAGTACGTGTAGTTGTTCAATTGAATCTGACGTCTATGAATGACCGG # Right flank : CACCAAAAAAGCCCTGCTCGCGCCGACTCCTGCTGGTCGACCCCCTTTGACCAAGCAACGCCGGCCTCCTGTCCCGACGCATCCATCCTGAACTGATTTGCAGTTTTCACACAGCCAAAGGACTACTCTGGCATCCCAATTCCGCGGCCCAACGACCAAGAAATCCTACCCCCACGCACGACGCCGGACACCGCCATCCCGCGTCGTTGTTCCAGCACCTGTCGCCAGGGCACAATCGTAAAGTCCCTCTGCCGTTCAATGACGGCAAACTTCCCGCTCACGCGCGAGACCGGTTCGCGGTAGGTGCCGTCCACATGGCCCCGATCCGGTGCTGGTGAATAGGGCTTCCGGATCTCTTCGCTCAGCTCCCGGCCGGCCTGCGCAAGGTCGCGCTTCAACAGCTCGGATTTCTGTGCCGCAGATAGCCCTGTGTCTGAGTCCATCTTCATTCCGATACTCGCGAGAAACGCACGCCGCTTCACCTGCGCCTCAGCGACCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 86010-82812 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFC01000027.1 Hyphomonas pacifica strain C76AD contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================== ================== 86009 36 100.0 30 .................................... AACAACTCGGGGCGTAGCGCATCTAGAACC 85943 36 100.0 30 .................................... CACCTAGTCTTTGCGGTGAAACTCAAACAA 85877 36 100.0 30 .................................... GGAGCACCAGCCATGCCAGCACCTTTAATC 85811 36 100.0 30 .................................... GAACATCGCGCAGCCGCTACAGCCGCAAGA 85745 36 100.0 30 .................................... AGGACGGCCAGAATGGCTTCCGAATACGCC 85679 36 100.0 30 .................................... ACACAGGATGTTCGGCACACGCCCAAAGGC 85613 36 100.0 30 .................................... CGTGATCACTCAACCCTGATTTACGGTGCA 85547 36 100.0 30 .................................... CGCTGGGCACGCGCTGGACGCCGCCAGACC 85481 36 100.0 30 .................................... CGGTATTATCCTGGTGAACAACTATACCAC 85415 36 100.0 30 .................................... TTATTCTTGCGTGTGGCGTTTGGTTTGCTG 85349 36 100.0 30 .................................... TCACTGACAGCTTGCTGGACCGAAGACCGG 85283 36 100.0 90 .................................... GTCTTTGTTCAGCGGGCTGTTGTCGTTTGCGGTTGGCCCACACTTCCTGATCGGCTAACCTATTGACGCCTGGCTGCAAAATACTGCTTA 85157 36 100.0 30 .................................... AGAGAACCATCCATGTCTGCATTCGATAAC 85091 36 100.0 30 .................................... GTTCGCCCATGGCTGACGAGAAAGACCAAA 85025 36 100.0 30 .................................... AAAGATTGGGTCGGACGCAAAGATTGGGTC 84959 36 100.0 30 .................................... CGAGTAGAGACCATGGCCGAAGACGAAAAG 84893 36 100.0 30 .................................... CTAAGCAGTATTTTGCAGCCAGGCGTCAAT 84827 36 100.0 30 .................................... TATGCCGACGAAGTAACCACCCAGCAATTG 84761 36 100.0 30 .................................... AGAGAACCATCCATGTCTGCATTCGATAAA 84695 36 100.0 30 .................................... ACGCCGAACGATGAAGATGATGGCCTTCGA 84629 36 100.0 30 .................................... GACCGCGCCACGACAGAAAATTCTGACAAA 84563 36 100.0 30 .................................... CAACGGAGGTCCTGATGCTGAGTGAGAAAG 84497 36 100.0 30 .................................... CACACGTCCCGACAGTCCAGGAATTATGGA 84431 36 100.0 30 .................................... TGGCCTCATCGAGACCCGCCTGAAGAAGGC 84365 36 100.0 30 .................................... CAGGCGTCTGAGGACATCAAATACGTAAAC 84299 36 100.0 30 .................................... TGCTGACCGAATGGGGTGGTGATCGGGGAA 84233 36 100.0 30 .................................... TAAGGGTGGATTTCGTAGTGTGGCCCGTCG 84167 36 100.0 30 .................................... CTGCACTCATGATGTCACCTGATGAAGCGT 84101 36 100.0 30 .................................... CGCGTTTACAAGGGCCGTGCCAACTCTCAC 84035 36 100.0 30 .................................... CGAACACGTGACTCAACCTCGCTCTTAGTT 83969 36 100.0 30 .................................... AGAGCGCTTCGGAATGGTTGAAGCGCTTGA 83903 36 100.0 30 .................................... ACTGAGACGCGCGACGGACGGACAAAGCGC 83837 36 100.0 30 .................................... AGGCAACCAAGGCTGGGTGACAGAGCATGA 83771 36 100.0 30 .................................... GAAACAGGAGACCGAAATGGCCACAGCAGA 83705 36 100.0 30 .................................... CTCTATGCGGAACTCAAGGCCCGGATTGAT 83639 36 100.0 30 .................................... CATTTCGCACGACACAAAGCGGGAAAATCG 83573 36 100.0 30 .................................... GCGTCGATGCAATTAGGGTCTCTGATTGCG 83507 36 100.0 30 .................................... CCATCCGGTCCGGGACATCCTTGGCAAACC 83441 36 100.0 30 .................................... TGACAAAGCAAATCACAAAGTGCGCAAAAA 83375 36 100.0 30 .................................... TGAGATTGAGGTGTATACGGAAGGCGGGGC 83309 36 100.0 30 .................................... CGACCATCACAAGGAAGAGATTGCGCCCCT 83243 36 100.0 30 .................................... AATATTTCGCAAGGGGTGTTCGGCCCGTTA 83177 36 100.0 30 .................................... GCCCGGCGTCAGCGTCTCAACACCTTCCGG 83111 36 100.0 30 .................................... CATCAAAAAAGGAAAGTGATGGCGCGAAGG 83045 36 100.0 30 .................................... CTGGACCCAATACCTTCTCAACAAAACATG 82979 36 100.0 30 .................................... TTCACGCGCGGATCCCCGAAGGCGGCCTGC 82913 36 100.0 30 .................................... CCATCCCATCAATTGGGTTCTTGGCAAGCA 82847 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ========================================================================================== ================== 48 36 99.9 31 AGGTTAGCCGATCAGGAAGTGTGGGCCAACCGCAAC # Left flank : GACCGAATGGCCTCCTCACTGGCGCGAGTTTACCTCAAGGAACAGTCTGCGCTCGAATTCCCTGGCCCTCCCTTCGCACTCGCCCGGTCGGCGCCGTGAGTCAGCTCAGTGGGTACAGAATTATGTGGGTTATGGTCATGTTCGATTTGCCCGTTCTGACAAAGAGCGAAAGAAAGCGAGCTAATAAATTTAGGCTTTTTTTGCGCGACATTGGCTTCAGTATGGCGCAGCTATCGGTTTATATGAAAGCTGTAAGCGGGAGCGATGGTGTTGATGCTATTTGTAGGAAAGTCGAGGCTGAGGTTCCACTTGGTGGAGTTGTCGATATATTACAATTTACCGACAAACAGTATGAGAACATCATTTGCTTCCGGAACAAAAAGAGACAGGCTGCGAATCAAACTCCGGGTCAACTTGCGCTATTTTGACAATCCGTCGCTGTTTTCTGGCAGAGAGATAAAAGAAAAAGCCCCGGAAATCCGGGGCTTATCCATATATGG # Right flank : GGGTCTTGCCGACAAATACACTAAGGGTCATATAGCGGACGCAGGTGGAATAAGTTCATCCTTGCTGTCACGAACGAGGCGATGCAGATGTTCGGCAACCGGCGTCCAGATTGTTTAGCTGCATACCACGCTCGGTTCCCTGATCATCAGCTTATAGAGTTTTTTGTTTCTGCCCCTGTCGAATTCGACCGCCTATTGGAAACGGCAACTCGGCGGGGGCCAAGAGCTCACGGATCAGGAATTGCAGTCAGTCGATGCCGTCTTCGTGGAAGACGTACCGAATGGTGATTTCGTCTAAAAATCCCAAAAGCGCGACATCTCGATTGCCGACGAACTGGTGTTGCCTCTGGTTGAAGCCCGCAGACAGCCTAGTCAACAATGTACGGACTACTGAACTGACGTATCCCACCGCTCGAATTCCGCAGACATGTCCATAATTAGAAGATCGAATTCAGATGATTGTGCGGGTACCCTCTGACAGAATGAGATAGGCTCGCTCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGTTAGCCGATCAGGAAGTGTGGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //