Array 1 1204-76 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACUYZ010000002.1 Escherichia coli strain FF1761 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1203 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1142 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1081 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1020 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 959 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 898 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 837 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 776 29 96.6 32 ...........C................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 715 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 654 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 593 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 532 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 470 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 409 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 348 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 287 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 226 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 165 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 104 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95844-93497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACUYZ010000014.1 Escherichia coli strain FF1761 14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95843 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 95782 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 95721 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 95660 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 95599 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 95538 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 95477 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 95416 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 95355 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 95294 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 95233 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 95172 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 95111 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 95050 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 94989 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 94928 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 94867 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 94806 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 94745 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 94684 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 94623 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 94562 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 94501 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 94440 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 94379 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 94318 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 94257 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 94196 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 94135 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 94074 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 94013 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93952 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 93891 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 93830 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 93769 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 93708 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 93647 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 93586 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93525 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //