Array 1 1930-980 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCNL01000001.1 Klebsiella pneumoniae strain COL-Kpn59 contig_1_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 1929 28 100.0 33 ............................ TATCATCCCTATCGCGCAGCACTTCGACGGCGA 1868 28 100.0 33 ............................ TACCGCCGCGATACTGGCAGTTTTCAGCTGAAT 1807 28 100.0 33 ............................ TCCCGCTGGGTAAGCAATATATAACATTTGCAG 1746 28 100.0 33 ............................ TTTAACATTCTGAAAGTGCAATTTTTGAGGCTC 1685 28 100.0 33 ............................ TTAAGGAGGGGCGCCATGGAGCCCGTATTGATT 1624 28 100.0 33 ............................ CAGCGGCGGCGGTAACGCCGCCAGGAGCAACCT 1563 28 100.0 33 ............................ CACCGATCTGCGCCAGCTGGGTGAGACGATGAC 1502 28 100.0 33 ............................ TACACTCAAGAAAACAAAATCTCAGGTTGATAC 1441 28 100.0 33 ............................ TGGAAGGCGCGATTTGGAGATAGAGCAGCATGA 1380 28 100.0 33 ............................ CTCGCACAGCATCGCCCGGATCCGCTTCCACGC 1319 28 100.0 33 ............................ CACCCGCGTTTTCGAAAGGGATGGCGGCTATGT 1258 28 100.0 33 ............................ CGACGGGGCAGGTTTACGTCTACCCGGGCAGGG 1197 28 96.4 33 .G.......................... CATACCAGTCTCCGCCGCGGTCGTACTCAATAT 1136 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 1075 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 1006 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ========================================= ================== 16 28 98.9 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGAAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11261-10683 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCNL01000001.1 Klebsiella pneumoniae strain COL-Kpn59 contig_1_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11260 28 100.0 33 ............................ TGCCTCCAATGCAATCACCGGCCTGCTAACCGG 11199 28 100.0 33 ............................ CGTGTCGAAGCGCACCTCGTAGCCGAGCCAGTC 11138 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 11077 28 100.0 33 ............................ TCCAGTCGTCGTAGTCCTCGGTAATGTCCTCGA 11016 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 10955 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 10894 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 10833 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [10828] 10771 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 10710 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //