Array 1 2406669-2405648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054502.1 Flavobacterium columnare strain F2R65 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2406668 36 100.0 30 .................................... TTTCTAGCTTTAGTCACCTCATCTTTTGAA 2406602 36 100.0 30 .................................... TCTGAGTACTGAAAATTATAGCCATTGTAA 2406536 36 100.0 30 .................................... TTTTATGTTTTTGACCGTAATCAAAAGATA 2406470 36 100.0 30 .................................... CGATTAATTTTAGATAAACCAAGAACTTTG 2406404 36 100.0 29 .................................... ATGATAAATAAGTTTTGTATGATGATGTA 2406339 36 100.0 29 .................................... ATTTCTTTTAGTCTTATTCTTTTCTTGAA 2406274 36 100.0 29 .................................... CCTGCTGTAATTGCTGTAATTGCTGAATA 2406209 36 100.0 30 .................................... AGTTAGATTTATATCAAGTATTTTAGCCTG 2406143 36 100.0 30 .................................... TCTATTACAGTGTAATATTCTTCAGGTATT 2406077 36 100.0 30 .................................... ATAAAATCCATTTTTTCAAAATAATTTAAA 2406011 36 100.0 30 .................................... GCATTTGATATTTTATAATTGTTCCGATTT 2405945 36 100.0 30 .................................... TCTACTGTTTTTATTAACTTGATAAACAGT 2405879 36 100.0 30 .................................... GTTTTTTGAATAAATAGTTCATAATCGTAA 2405813 36 97.2 29 ....A............................... ATTTGAGATTGGTGGATTAGCCTTATCAT 2405748 36 100.0 29 .................................... ACGCCTCTATTTCACGTTTATGGTAAAAA 2405683 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.9 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAGGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGATCCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2975669-2973275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054502.1 Flavobacterium columnare strain F2R65 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2975668 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2975654,2975665] 2975596 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 2975530 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 2975464 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 2975399 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 2975290 36 94.4 30 T.....A............................. AATGGTCGGACAACCTATATACACCTTCTT AATAT [2975278] 2975219 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 2975153 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 2975087 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 2975021 36 100.0 30 .................................... TTATTTTGAAAAAAATTCAATTATAGGGAT 2974955 36 100.0 30 .................................... CGAGCTAATTCTTCAGCTAAACGTTGTTTG 2974889 36 100.0 30 .................................... GCTGGTTTGAGAAACGAAGGCGAGGTCTTT 2974823 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 2974757 36 100.0 30 .................................... TCACGCTTTAAGATTGCGTTCTTACGAAGC 2974691 36 100.0 30 .................................... ATGGTGCTGAGTAATTCATTACTCATAAAC 2974625 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2974560 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2974494 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2974429 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2974364 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2974298 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2974232 36 100.0 30 .................................... CAAATCACAATCATTTGAGATTGAATAGTG 2974166 36 100.0 30 .................................... TTATTGCCGGAACACCAGCGAATGAAGTAA 2974100 36 100.0 30 .................................... GAAAGAAGCTAAAGCGATGTTAAGAGCATT 2974034 36 100.0 30 .................................... ATATCTTTTCTTTTACAGGAAACAATAAGA 2973968 36 100.0 30 .................................... CAATTTTAATTTATGACTGAATTTGAAATG 2973902 36 100.0 30 .................................... AAAACCATAAGAATTATTTAAAAAGTTACC 2973836 36 100.0 30 .................................... CTTTTACAATGCACGAAATTGTAGAAAATG 2973770 36 100.0 30 .................................... TGGTCAAGCAGATTCTGTAGAGAAACTTCT 2973704 36 100.0 29 .................................... TTAAAAAACAAATTAAATCTTGAAGACCA 2973639 36 100.0 30 .................................... ATATAAAACTAAAAATAAATTTATAGTAAT 2973573 36 100.0 30 .................................... ACAAATAGTTAAATCCCAGCCGTTGTATTG 2973507 36 100.0 29 .................................... CTAATGGATTATTCATTGACGTAATTGAT 2973442 36 100.0 30 .................................... ATTATTAAACTACTTAATTTCCCATCTCTA 2973376 36 100.0 30 .................................... GCAACAACCCTCCGAACCAATACCACCAAA 2973310 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 36 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //