Array 1 930383-931083 **** Predicted by CRISPRDetect 2.4 *** >NC_012214.1 Erwinia pyrifoliae Ep1/96, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 930383 29 100.0 32 ............................. CCTCGCGTCCGTGCGGGGCTTTGCTATCATTA 930444 29 100.0 32 ............................. TTTATGACGCTGATTATTATCAGGCTAACCAT 930505 29 100.0 32 ............................. CCGGAAATTTATTTGTGAGTCGGGGAATTTGG 930566 29 100.0 32 ............................. CGGGTTAAATGACGTCATGGCGACAGCATGAA 930627 29 100.0 32 ............................. AGTATCGAATAACGTTACCGTGGCCACCATCC A [930649] 930689 29 100.0 32 ............................. GGGAGAACTTGCTTATTATCTCAAACAAAGCG 930750 29 93.1 32 .............A......T........ CCGTGTTGAAGCCATTGGTGTTACCTCTATTT 930811 29 96.6 32 .............A............... GACGTAACAGTAAATGCGCCGGTTCGCGACAA 930872 29 100.0 32 ............................. AGGTTAGAAACGAACAAGTCGGCATCAACGCC 930933 29 100.0 32 ............................. CTTTGATGATAATTTTCTTGCTTCTATTACTA 930994 29 100.0 32 ............................. TCCCGCTTTCACACAGGCCGGGATTAGCCGCT 931055 29 93.1 0 ............CC............... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AAAAGGCAGGGGCGGTTAACTCCCTGTCTTTTTCAAGTTCCTTCAACCCTTACGGGCGCCCGGTCAGTTGCTTAATGGTAACGATAATCAGCAAACTGACGTGCAGTATCTGCAACGTCAGCAGGATTGCTCCCTGCGTTATCACCTGCATCTCCTTGATAAAGGAGCGTGCGCGCAGCCGGTGAATGCTGTTGGGCTACCCTTCACGGCGCGTACCGGTTGTTAGCAGGTACAGGCAGCACCGTTGCGCAAAGCGGCCACCAACCGCTGCGGAACAGGAATCAACCCGGTCTTACAAACCGGTTTTTTTTCGTCTTTACGCTGCCATTTCCGCTATATTGAAGATGTTCACTCAGCCGTTTGCCCCGCATATGTGGCCGTGTATCAAGCCGATTTTCCCTGCTTTAAGTCGCGAATCCGTGCGCGCTTTAGAGTGGGAAAAAGTTGGTAGAAATATGGAGTGGTAAAAAACTTTCTAAGATCAGTGAGATAGTTTTAGA # Right flank : GCTGGTACATTTATCCCTACCGTTCTATGATTAATGCGAATCGCACGATCTGTGCTAATAGCATGATTAAGGAGGAGACCATGTTAAGTTTTACCGCCAATCAGGCGAAAACGCAGTTTGGGGATTTGATGACCAAAGCGCAGCGTGAGCCGGTTAGCATCACCTGTAATGGCCGTCCTGCGGTTGTTGTCGTTCCTGCCGAAGATTACGCGGTGCTTGAACAGCTGAAGCTGGAGGCTTTACGAACCAGGCTGACCCGCTCCATAGCCCAGATGGAAGCCGGACAGGTTCACGATGGTGACGCGGTGTTCGACGAGTTGATGAAGGATCTGTAATGGGAAAATTCACACTCACGGATGATGCTAAAGAGGATATGAAGGAAATAAGGGCATATTCTGTTCAGCAATGGAATAAGGAGGTGGCGAAAGTCTACCTGGAAGGGATGCGCCTTACCATGCAGATGCTGGCGAATCATCCTGATATTGGTGATGATGTCAGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 941216-942161 **** Predicted by CRISPRDetect 2.4 *** >NC_012214.1 Erwinia pyrifoliae Ep1/96, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 941216 29 100.0 32 ............................. CCTTCCAGCCCTCTGAGTGAGGGCTTTCCGTA 941277 29 100.0 32 ............................. GCTTAATGCCTTTGCCGATGCATTTTCCTTTT 941338 29 100.0 32 ............................. ACAGTCAACCAGTACCACTCCATTTTTTTCGT 941399 29 100.0 32 ............................. AAAGTTTGGCAGATGCGCTACAAGATTGAAGG 941460 29 100.0 32 ............................. GAAAAAATATCCGACCTCCGCGAAAAGCAGGA 941521 29 100.0 33 ............................. CCTGGTTGTAGGAGTGGGGCCGACCCGTACCGG 941583 29 100.0 32 ............................. GCCACTAGAATCAGCAGCCCGCATCAATTGCC 941644 29 100.0 32 ............................. ACGGATGTTGATATTGGGGACGTAATAGGTTG 941705 29 100.0 32 ............................. GTCAGGTAAAAGGACACTCGGTGGAAATAATT 941766 29 100.0 32 ............................. CATGGCCACCCGGCCAACCACGATCCAGTTAT 941827 29 100.0 32 ............................. CTGCAATAGCAGTACTCGTGCCTTTTTCTTAT 941888 29 96.6 32 ............................A TATGAATGAATATCTACGCAGTAAATGGGAAT 941949 29 100.0 32 ............................. GTGATCTGCGCTGCTTCTGCCACTGTGCATTC 942010 29 100.0 32 ............................. TTGTCGCAATCGCTGCTGGTGAGTGGTTCGTG 942071 29 100.0 32 ............................. TGCGGGTTGGCCAGATTGGGCGCACGGCTCAT 942132 29 96.6 0 ...........A................. | C [942137] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : CGCCGGAGAGATATCCCCACCGCCACCCCCACCGCCACCCCCACCGCCACCCCCGCCGGATGCCCAGCCGGTTGCCATTCCTGAACCTCAGTCGCTTGGCGATGCAGGGCACCGGAGTTCGTAAAATGAGTATGCTGGTGGTGATTACTGAAAATGTTCCTCCCCGCTTGCGGGGACGTCTTGCCGTGTGGCTGCTGGAAGTGCGTGCGGGCGTGTATGTGGGTGATGTTTCGCGCCGCGTCAGGGAGATGATTTGGCAGCAGCTGGATCAATTATACGAGGAGGGCAATGTAGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGGGAGAATCGGCGTCTGCCGGTGGACCTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTTTGATAGGTGAAAACGGTGCTTTTTCAGACAGGATAATCTGGTAGATTTTAGCGGGTGGAAAAAACCTTTATAATTTAAGTGGTTGGTTCTAGA # Right flank : GATGAAGGTCGTTACCACGCAATATGTATTATTGACAGATGCTAAGCGGGCCTCCTTTTAAACCAGCCAGAATACAGCTATCTCTGTAGCGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGTGGGTCGATATATTTCCCCATGCGTGGGTCGCTGGTTAAAATGCCTGCTATTCTGAATGACTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGCGGCGTTCAGTTTCGATAGTTCTTTCTGAAGAAAATTCATCTATTTTTCCCTGTGGACCACCAATTGATACTTGTGCAGAGTACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGACTGATAATATACCGGTCAGGTTCATCGTAAATGATAATGCTTTTAGAAATGCAATCCTCCATATTGGAAAGTATTATCCACGGGGCGAAGAACCATCCGCAAGAAAATAATATGACGGCGGCAATAAAGAAGTAACAGCGCCTCATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 951489-952398 **** Predicted by CRISPRDetect 2.4 *** >NC_012214.1 Erwinia pyrifoliae Ep1/96, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================================================================================================================================== ================== 951489 28 100.0 32 ............................ ATCACCGCTTCCCCCCTACCTTTGCAGTCTCG 951549 28 100.0 32 ............................ TGCCGGACAGCGTGATGATTTTCAATAAACCA 951609 28 100.0 32 ............................ GTTCCAGGCTTGCCGCACATCACCAGCCCACC 951669 28 100.0 32 ............................ ATTGACGAAATTTTGACAACGCTGAAACTGCC 951729 28 100.0 32 ............................ CCCGTTGTGGCTCAAAGCCGGAGATCAGCACC 951789 28 100.0 32 ............................ TCTACGGCGAGTAGAAAATAACTATCAAGCAG 951849 28 100.0 32 ............................ GGAAACGAACAGCGTTTTCCACTGCATTAATG 951909 28 100.0 32 ............................ CATTCGTCTTGCCATCTCTTCGACCGGCAGCA 951969 28 96.4 32 ...........T................ CGGGATAGCGCCGGGAAAATCAGTTGCAACGC 952029 28 92.9 32 ...........T.........C...... CTGAAACCGTCAGGTTCCGGGTACTTTTTCTT 952089 28 92.9 195 ..............T.C........... TAGACCGGTGCTTTTTTCTGTGAGCCGGTAGAGGTTCCCTGCCGTACCGCCAGACAGCGTATAGCGTTAAACACGCTCCACACCGGCTCTTTTAAAATAAATTCCCTCATCCATAGCTATATCAATTATTGCAGATCAGAAAAAAATATCCACTGGCGCTATCATCAGATCAGGCGTACGATGAACGGGTTGAAA 952312 28 82.1 32 T..T.....T.A...A............ ATAGCGATATATATTATTGATAGTTAATGATT 952372 27 82.1 0 T..........TG.......-...T... | ========== ====== ====== ====== ============================ =================================================================================================================================================================================================== ================== 13 28 95.9 46 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTTTAATAGGGATAAACCTTCATTTGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCGGGCGAAGGCGATGAGATGCTGCACCCGTTCCATATTCACGGCACCCAGTTCCGCATCCTGTCGGAGAACGGCAAGCCCCCGGCCGCGCATCGTAGCGGCTGGAAAGATACGGTGCGCGTTGAGGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAATCACCCGGCAGACAGGGCGCATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATACCGGGATGATGCTGGGTTTTACCGTAGCGTAATAAAAGTGGGTGGCTGCAGCGGGATAATTGTCGGAACATGGTTAACGCCTCGCGTACCCTTTTTTTTCGTCCGTCCTCAACCTATTGATTTATATCGCGTGGTTGTCAGGGTGAAAAAAAAGGGTTAAGCACAATAAAGTGGAAAAAAGTGAATGCGGTAAGCCGTTTAGCGCTGTAGAGTAACG # Right flank : ATATATTTGCAACGGTTCTCGCTGCCTGCGGTTGCGTTAAAACCGTATTGAAAGATAAGCAAAGAGGTATGTAACTTTCCAGCCAATATCATCATTTCACAGATATCCGGGAAGCAAATAACCGCTTCACAAGGAAGCGCCATATGGAAATGATTAAGCCCTCCGATTTAAAAACCATTCTGCACTCAAAACGTAGCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTGAACGGCGGCCGGGTGGAATATGTTACTGACGAAGGTAAACAGTCTCTGTACTGGAATATTCCTATCGCCAACACCACTGTGGTGATGCTGGGTACCGGTACATCGGTAACCCAGGCGGCGATGCGTGAGTTTGCCCGCGCCGGGGTCCTGGTCGGGTTTTGCGGCGGCGGCGGAACTCCGCTGTACGCGGCCAATGAAGTTGAGGTCGATGTCTCTTGGCTGAATTCACAAAGTGAATACCGCCCCACGGAATATCTTCAGCACTGG # Questionable array : NO Score: 4.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-1.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 961931-962258 **** Predicted by CRISPRDetect 2.4 *** >NC_012214.1 Erwinia pyrifoliae Ep1/96, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 961931 28 100.0 32 ............................ TCGGCGCTGCCGCTGCTCAAACTCGCCGTGCT 961991 28 100.0 32 ............................ ACCATCACTGACAGCGAAGCCCGGAATAAACC 962051 28 96.4 32 C........................... AGTCCCGGCACCACCTCAGCGCCCAGCCCTGT 962111 28 100.0 32 ............................ AGCTAGAGGGGGTAAATAGCGTGGACTACAGC 962171 28 100.0 32 ............................ AAGTCGCGAACAGATTTCGGGGGGTTTTTGCA 962231 28 89.3 0 ...........C............TT.. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGATTTAAGCGCACTACAGCAAAGCGGCTGGAATAAGTGTCTTAGGGATTATATCGCCTGTAGCGATATCGCCCCGGTTCCGAAGGGGGCGGCGTGGCGCACCGTCCGGCGCGTCCAGGTGAAAAGTAGCGCTGAACGCCTGCGCCGCCGTTCGGTAAATAAAGGCTGGCTAAGCGAACAGGAAGCCGCAGAGCGAATCAGCGTACTCAACGAGCAGCGCAGTAATTTGCCGTTTTTGCAGATAAAGAGTGGTTCTAATGGTCAGGCCTGGCGGCTGTTTATTGAACATGGCTCGCTGGTATCTGCCCCCAGCGATGGCAGCTTTAGTTCCTATGGGTTAAGCGCCGCTGCTACCATCCCCTGGTTTTGACCCTTTTTTTTCGGCTAACGCTAACCTGTTGATTTCAGGTGGCGTTAGCATAGCGGTTTAAAAAAGGGTTTTACTGCGCATTTTAGGTTTTTAACTTGTTTTATAGCGAGTTAGTCTGCTTTACTAACG # Right flank : AGGATTCAATAACCCATTCCCTTGCCTGAGTGTATGCTATGCACCACGGGCTTCTCGTTAAATGCACATTATGCTGACAGGCAGAAAATATGTTATCCGTGGCGCATCTCTGGCAGCGCCAGCTGTTCCATCGGTGCGCCTGACCTTACCTGTGCAGTGCAGTCTCACCGCCGTTGTATGCGGAAATTATTAAGACGGTTGTTTCACGGCAGTTAAATCAGCTGAATGTAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGCATTTTTATCGCGGGTTTTTTCACGGTTTTTTTACAACTCATTAAGAATAATCTTATATATATTTTGTGCTCATCATTTCGGTGTTGAGGTTGTTTTTAGATTTTTTCGATCAATAATTTCCGGAATTTTCACTTGGAGTTGGCCATTTTTTTTTCTTCTTTTTCTTCGATAGTAGCTTCGCCGGTAGTGCAATTGCCGTTTTTTGATTTGAATGAAATGCAAAGTTAAACTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //