Array 1 148710-149399 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEQ010000004.1 Escherichia coli strain Unknown:H5 / ND / 5362 (ST Warwick) / clade II isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 148710 28 100.0 32 ............................ AGAAGGTAGTCATATTGCTCATACTCAGAAGC 148770 28 100.0 32 ............................ GGCCCCGCATCCAGCATCCCCACTGTCGCCCC 148830 28 100.0 33 ............................ TTTTTTACCACCCGCACCGGCAATAAACAGCGG 148891 28 100.0 32 ............................ AGTCGATTGGTCTCGACGGTGGTGATGGTTAA 148951 28 100.0 32 ............................ AATAAGAATTTTTCTATCAATACCGGATATTT 149011 28 100.0 32 ............................ TGTCCGTGAGCGTGTCAATTAAGCGTTTATCA 149071 28 100.0 32 ............................ ATTGCCACTTTACGGCGTTCCTGAATCTCACG 149131 28 96.4 32 .............A.............. AATGGTATTGCTGCGGGATTATGTGGTTGATC 149191 28 100.0 32 ............................ GCGTTTGCTGATATTTTGAACCCGCGTAGCTG 149251 28 100.0 32 ............................ ACATCCAGCGCGAACACCCGCGTGTAAACCTC 149311 28 96.4 32 ...........C................ TGTTGAGCAATGTAATCGGGGTCAGATACATC 149371 28 96.4 0 ........................C... | C [149394] ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTGATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAATTGCTGTTTGGTTCGCTGGTGGATGGTGGTCAGGTGACTGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAGGTAAGTTGATGAAGTCCGTAATCTCGTCAGAGGTTACGGACTTTTTGTTTGTAGGCTGGTGCGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGAATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGTGTTATGGCGTCCTCAACTCCGAACCATTAGCTGCAACATACAATAACAATTGTAATAATTGCGATGGAAATCAATTTTTCACACAGAAATCAATGTTGTACTAACCTCGATGTCGTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACCCCATCTGATCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGATACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 163659-164108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEQ010000004.1 Escherichia coli strain Unknown:H5 / ND / 5362 (ST Warwick) / clade II isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 163659 28 100.0 32 ............................ ATTAGCCGGTCACCCTGGATCAACTCAAACCA 163719 28 100.0 32 ............................ ACCAGAAGGCGTCACTATGATGACCACTCAAA 163779 28 100.0 32 ............................ TTCGAGCAAACCCCGGTGATGATGAAAGAGTC 163839 28 100.0 33 ............................ AGCACCGTGTACCGCTGAAGGTCGTGCAGGCGT 163900 28 96.4 33 ......................A..... CTGGCGGCGTCCTGCAAAACTTTCCGCCGCTTT 163961 28 100.0 32 ............................ AGTTCCGCGCCGTGTCATCTGTGATATCCCAC 164021 28 92.9 32 A......................T.... TGCAGAAAAGGATATGGTGTTGCGGGCAAGAG 164081 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTTTTTATTTAAGGCGCATTAATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACATACTGTTCGCGCTACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAGTACCAAATCGACTCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGGTTGAAACTGTGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGTTATCATTCCA # Right flank : ACTCAACACTCCATCCTCCAATATTTATTCCCCATAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTTTAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //