Array 1 1115-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXO010000205.1 Escherichia coli strain FC5 NODE_205_length_1122_cov_1.644221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1114 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1053 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 992 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 931 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 870 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 809 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 748 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 687 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 626 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 565 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 504 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 443 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 382 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 321 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 260 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 199 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 138 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATCAACA # Right flank : GATGTAGGGGCAATCGAACGATTCTCTGCCGACGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8698-9092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXO010000020.1 Escherichia coli strain FC5 NODE_20_length_92084_cov_14.042161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8698 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 8759 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 8820 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 8881 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 8942 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 9003 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 9064 28 72.4 0 .AA........C..T....A..-.C...C | T [9083] ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18039-16973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXO010000016.1 Escherichia coli strain FC5 NODE_16_length_109879_cov_14.219222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18038 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 17977 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 17916 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 17855 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 17794 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 17733 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 17672 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 17611 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 17550 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 17489 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 17428 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 17367 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 17306 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 17245 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 17184 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 17123 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 17062 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 17001 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //