Array 1 8267-122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVVW010000041.1 Acidiphilium multivorum strain LMS NODE_41_length_29474_cov_36.604834, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8266 29 100.0 32 ............................. GTCTATAAGCTGTCGTTGATTTCGCCATGAGG 8205 29 100.0 32 ............................. GCACACCCATTTCCTCGACAGCCCGCGCATGA 8144 29 100.0 32 ............................. GCGACATGGCACGCACGCTTGTTCTTCTCGAA 8083 29 100.0 32 ............................. CGTCGCGGCCGTGACCGTAGTGCCGGCTGATA 8022 29 100.0 32 ............................. GTCGCTTGTTTCTTAGTGTGACTGCTGGATTA 7961 29 100.0 32 ............................. CGGTGCCTGATATCGACCTTCGGAAAATTTAT 7900 29 100.0 32 ............................. CGAGGGGGTAGGGGTTCGTCGGTGCCGACGTC 7839 29 100.0 32 ............................. CGGGGCCACGCCAGCAGAGCGCGGGATCGCCT 7778 29 100.0 32 ............................. ATAGGCGTTTGTGTCCACAAACGCGATAGAGT 7717 29 100.0 32 ............................. GCGTGGCGGCGTAATATAGCGGGGTACTGTTC 7656 29 100.0 32 ............................. CACTTGGGCCAGCCCATCGGGGACCATCCACA 7595 29 100.0 32 ............................. AAGTAAGACCTAGATTTTGGGTCAGATTGATC 7534 29 100.0 32 ............................. TTGCGCCAAAGTCAGGGGACGAGCCGTCGATA 7473 29 100.0 32 ............................. CATTGGCTTTGGCGGGCTGTTGATAATCGTGG 7412 29 100.0 32 ............................. TGGGAATTCTCCGGGAGACCATCTTCGACGAT 7351 29 100.0 32 ............................. GCGCTCTTGGCCGTGGTGTTCAGTTCCTCTGC 7290 29 100.0 32 ............................. TGCGGCGAGTGTTGCGAACATACAAACCGGCG 7229 29 100.0 32 ............................. GTTGGGGGGGCAATAAAGGGGGCGCAAGTGGC 7168 29 100.0 32 ............................. GGCGAGCTGCGCGTCGCGGAGCGCCTGACGCA 7107 29 100.0 32 ............................. AACAGCGGTAATTGCCAATCGGCGCTTCAAGC 7046 29 100.0 32 ............................. CGATGATTCGTGTTGCGATAAATTGCCATCAA 6985 29 100.0 32 ............................. ACCGGCGAACCAGCCCTGATGATGAAGGCCAG 6924 29 100.0 32 ............................. CATCAATGGCCTCTTGTGGGGAATTTTTGTTC 6863 29 100.0 32 ............................. CCTGGGTTCAATATGTGTCCGGTGTTATTCAG 6802 29 100.0 32 ............................. CCAGATAAACCAGGCGGCGAATGTAGGCAGCA 6741 29 100.0 32 ............................. ATAGCGCAACCGCCATCTCCGCTCCTTCTTGA 6680 29 100.0 32 ............................. GGTTACAGGGTTTTGCGGTGGGCACCGCTCGA 6619 29 100.0 32 ............................. AACAGGCCCGGCTTGTGGTGCGCGAGGTCGTC 6558 29 100.0 32 ............................. CCCTGGCAATCGGTCGCGTCGTTGTCGAGCGA 6497 29 96.6 32 ............................T TGAGGAACGCCACGAGCGCGCTGCGCGATTGC 6436 29 100.0 32 ............................. GTAACGAGCGATATGGCGGCTTGGAAGGTTGG 6375 29 100.0 32 ............................. TTGAACCATTGCAAATGCTCCGGCGGGCAGAT 6314 29 100.0 32 ............................. CATTTTATCGCCCGTGGCCGGCGCGTCGATAT 6253 29 100.0 32 ............................. CCGCCATGAACATACTGGCTCGCGGTGCAAGC 6192 29 100.0 32 ............................. GTCTCGGTGGCACCGCGATAATTCTGCGCATA 6131 29 100.0 32 ............................. ATGCTGGACTGGGGCCGGATCGACCGCGATAT 6070 29 100.0 32 ............................. CCGACGCTGCTCTACGCCTGCGGCGTTGATCT 6009 29 100.0 32 ............................. AATAGGCATCAGATGGTTACTCCCCAGAGAGT 5948 29 100.0 32 ............................. TTCATGCGCGCCACCCTCGACCATCTCCCAAT 5887 29 96.6 32 ..................A.......... GTGCAGGAACGAATTGCCGCAGCGGAGACATT 5826 29 96.6 33 ............................A GCGGAGCGGCTGGCCGCAGAGCGCGCCGAGCAG 5764 29 100.0 32 ............................. GGATGACCGGCTGATGGCGACCGTGACGGTCA 5703 29 100.0 32 ............................. GTGACGAAGGCGCTGGTCCCGGCCTTGGCCGT 5642 29 100.0 32 ............................. GTCGCCGTAGTGCTGCCATGCCGTCGCGTAAG 5581 29 100.0 33 ............................. CCGAGCGCCCGGACGCGCGCCTTCGTGATCCAT 5519 29 100.0 32 ............................. GCTGCCGAGGAAGCCGGCGCCAATGTCATCGT 5458 29 100.0 32 ............................. AGGCGGGAGCATTTTGCGCCATGACCTCCTTC 5397 29 100.0 32 ............................. CCGAGGCGGAGGGCGCTTCGGCGTATTACCCG 5336 29 100.0 32 ............................. CTCTGAGAGCTTCGGGCGATCAGCGAATGAAC 5275 29 100.0 32 ............................. CTCGATCCCGTCATGGTCGAGCGCCTTGGTAT 5214 29 100.0 32 ............................. CGTATCGTAGGGGGAGTAATCCTCGCGGCGGT 5153 29 100.0 32 ............................. CGATGATCGACAAACTGGACGATATCCGCGAG 5092 29 100.0 32 ............................. TGGCTAATGCGCTTTTGCCGATTATCGCGGAA 5031 29 100.0 32 ............................. ATGAAAAACCTTTCGCACGGCAACGCGATAAA 4970 29 100.0 32 ............................. TCGATCGCCGCGCACAACGAAACGGTGACCGT 4909 29 100.0 32 ............................. CGGATCGGCAAGTGGCTAATGCGCTTTTGCCG 4848 29 100.0 32 ............................. GACTGGCACAAACTCAAGCCCGAGATGTTCAA 4787 29 100.0 32 ............................. TCGGCCGGCACTGAACCGTTCCGCGCCAGTTC 4726 29 100.0 32 ............................. ATGTGATGGTTTTCGGTCAGTGGCGGCAAAGC 4665 29 96.6 32 ............................T GCAGTTGGTGGGCGCATATCGGGACGTGGCGC 4604 29 100.0 32 ............................. TCGGCCGGCTCGGCTTTGCGGCGCGGATCGAG 4543 29 100.0 32 ............................. GCGAATTGCGCTGTGGTCATCGCGACTCAATC 4482 29 100.0 32 ............................. GCGGCAAATGCCGAATACGATTGGTTCGCGCA 4421 29 100.0 32 ............................. ATCAGCGGGCGCCGGGCGACCTGGCGCTGATG 4360 29 100.0 32 ............................. GAGGCGTTGATCGCATACGCGAGCGCCTGCAT 4299 29 100.0 32 ............................. CGTCAGTGCGGTCGTGGTGCCGAGAAACGCAT 4238 29 100.0 32 ............................. CGACTGGTATTCGCGGAGCCATGCTTCGGGCG 4177 29 100.0 32 ............................. GGCTGCGGCTTCTTGGCCTGCGCATGCAGGAA 4116 29 100.0 32 ............................. AGGAGGCTCGCCGAGTTCCCGCGCCCGCTTGT 4055 29 100.0 32 ............................. AATTCGGCCGGATTGCTGAACCCGAGCAGTCG 3994 29 100.0 32 ............................. ACAATGAAGCGGGCGATGGCCTCGGCCATGAA 3933 29 100.0 32 ............................. CCCGCAGCGGATGGGCCGCGATACAAAGCTAT 3872 29 96.6 32 ............................C TTCGCGTTCTGGCCGGCGTAGGCTTCGGTGAC 3811 29 100.0 32 ............................. CCGCGCATCTACGGCGCAGGCATCATGGTCAC 3750 29 100.0 32 ............................. CCCTGAAAATGCTGCAGCAGGGCGACCCGGGC 3689 29 100.0 32 ............................. CACCCGCAGGACCGCGAGCCGTGCCCATTTCC 3628 29 100.0 33 ............................. GGCAATCTGGACCGGGGACATCGCGAACTGGAC 3566 29 100.0 32 ............................. ACCAACACGAACACGATCACGCTGGCGGACGC 3505 29 100.0 32 ............................. TGTCATGACGAAAGTGTCGGTGGCGAGGTTGA 3444 29 100.0 32 ............................. TCGCAGCGCGGTTCGTCGCGGCGGGCGGCCAG 3383 29 100.0 32 ............................. GTCGAGAGGCTGGCGCGCCCGGTGCTTGCCAG 3322 29 100.0 32 ............................. CGACAAATATTTCGCTGGGGCTGGCGCTCGAT 3261 29 100.0 32 ............................. CCGAGGATGCGCGGCGGCGGCGTGCTTCGGCG 3200 29 100.0 32 ............................. CTGGGCGTCTCGGTCGAGGCGGTGAAGCGGGC 3139 29 100.0 32 ............................. CGGATTGCCGCCTGCGCTCGTCCACGCGTTCA 3078 29 100.0 32 ............................. GTCGAGAATCTGCTCCTGTTCCTCGACCTCGG 3017 29 100.0 32 ............................. CGTAGGATTGAACCCGTAGTTCTGCTCATTCG 2956 29 100.0 32 ............................. TCAGAATTTACGGTAATGTCTACCATGTAGAT 2895 29 100.0 32 ............................. TGTCGAATGATATCGTAGGGTATAAACCATGC 2834 29 100.0 32 ............................. CATCACAACAAGCGCGGGGTAGTCAATCCGCG 2773 29 100.0 32 ............................. GGTTTGAGGGCAGTCAGGTAGCGCAGGGGCAC 2712 29 100.0 32 ............................. GATACGAAATCGGACCGGGCGCCAGTCTTCGC 2651 29 100.0 32 ............................. CGGACCGTGTCGGTTGCCTGGCAGACGGTCGC 2590 29 100.0 32 ............................. ACGAGTATTTCCCGTTGCTTGTCGTTCATTTC 2529 29 100.0 32 ............................. CGGCCTGAATCCGAATGCGGTGAATTCTGCCA 2468 29 100.0 32 ............................. AGCTCGTCGGCCTTTTCATTCCCGCGCAGGGG 2407 29 100.0 32 ............................. ATTAATATCGCGCGAAATAGCAGAAACAGTGT 2346 29 100.0 32 ............................. CCTCTTGATTCTTCCACCATTCCTTCGCGCCC 2285 29 100.0 32 ............................. TCGCGGTGCAGATCAATTCCATCTCCCACCGT 2224 29 100.0 32 ............................. CTGTCGCACCACACGGCGTGATAGCCCCATGA 2163 29 100.0 32 ............................. ACGGACTAATGACGAACTCATAGCGAACAATA 2102 29 100.0 32 ............................. AGATGATCAATACGCCGGTGTTTTGGGTATTT 2041 29 100.0 32 ............................. AGAGGTTTCTGATAATGGCTCGTTATTTGTGG 1980 29 100.0 32 ............................. ACAAGAATTTCAAAGGTCTTCAGGACTATTTC 1919 29 100.0 32 ............................. GAGGACGCGCCGGAGGCCGTTCCCGCACCCGC 1858 29 100.0 32 ............................. GATCTCCGCACTGCTGGCCGGGATCTCCAGCA 1797 29 100.0 32 ............................. ATCGAGATCGACCCCTTTGGCGACATCCTTTT 1736 29 100.0 32 ............................. ACGAATTTGCATGAGAAGCGGCGAACTTAGAA 1675 29 100.0 32 ............................. TCCAGCGTCCAGCAGGAGTGCACCCCCAGAAG 1614 29 100.0 32 ............................. CGGCCTTCCGTCAAATCAGGGTCCTTCAATCG 1553 29 100.0 32 ............................. ATCGGTGCCGTAGTCGAATGAGGTTCCGTTAA 1492 29 100.0 32 ............................. GATAGACCGGGATATGGTCATCCGCCCGCCTT 1431 29 100.0 32 ............................. TAGCACGCGATGTATGCCACAAGTGGGAACGG 1370 29 100.0 32 ............................. GATCAGCAGCACAAAGAATGCGTATTCCCAAA 1309 29 100.0 32 ............................. GTCTGATTCTCTCGCAATTGCGATCTCGCCAT 1248 29 100.0 32 ............................. CCATCGTTTCTGCTACCGGCTTTCCCGAGGCG 1187 29 100.0 32 ............................. TTCTGAGTCGGAACGACTTCGGGGCCTGTCAG 1126 29 100.0 32 ............................. TTCTGGAGAGTGTGCCGAGTTCTTCGATCCCC 1065 29 100.0 32 ............................. ACGGGAGGGCCAATTCGGCAACGCCAAACAGG 1004 29 100.0 32 ............................. GTTTTTGATCGTCACAGAAAAACGCTGGATTG 943 29 100.0 32 ............................. CGGGCGCAATCAATTCGCCATGCGCTTTGAAC 882 29 100.0 32 ............................. TATTCTGGCGCCCGTCATCACGGCGGCGAGCA 821 29 100.0 32 ............................. TGGGGACTTATTGTCCTACTTGTCATAGGTGC 760 29 100.0 32 ............................. GAACGGACAAAAATCGTGGGCGGCCTTTCGAC 699 29 100.0 32 ............................. ATCGCGGTGATAGCGGGCGGCGGCGCGCTGAT 638 29 100.0 32 ............................. GTGGCGGCGCAGCTGCAACAGGCCACGGCAGC 577 29 100.0 32 ............................. ATCACGCGACAGCAGGGCGTTCTCGTGCGCTA 516 29 100.0 32 ............................. GCGGCGCAACGTCGCGCGACATAGATCAGGGG 455 29 100.0 32 ............................. GTTGATATCGCCCCCAGCCGCAGCCGTGACGG 394 29 100.0 32 ............................. GATGCGCCGGGAATTGCGATCACCGTGCAGGT 333 29 100.0 32 ............................. CCGCGTGGATCCCTGAACGCAGCGAGGCGGTA 272 29 100.0 32 ............................. CAATTTCTGCCGTGGTGAGCAACGAGAACCAG 211 29 100.0 32 ............................. ACAACAAGGTTCTGACCGCGAACGACCCTTCG 150 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 134 29 99.9 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : ACAAATGTACTCGCACGCATCATTCCCGCTATCGAGGATGTGTTGGCAGCCGGCGGCTTGGCAGTGCCAGAGGCGCCCGAAGAAGCGATGCCCGTTGCTATACCACCACCGGAACCGACGGGTGATGCTGGTCATCGTGGTTGAGAACGCGCCGCCGCGTTTGCGAGGCCGACTAGGTGTCTGGCTTTTGGAAGTTCGAGCAGGCGTTTATGTAGGAAACTATGGGCGCAAGGTTCGCGAGATGCTTTGGGAACAGGTCCGTGGCGCCATTGGTGACGGCAATGGCGTTATCGCCTGGACTTCTCCAAGCGATGCTGGGTTCGAATTCGACACCTGTGGCAAGAACCGCCGAGTGCCTGTCGATCTCGATGGATTTCGCCTTGTAGCCTTTACGGAGGAGGCGGAAACTGCTCCTCCCTTACACACAGGCGAGCCCCGCCACCGTCGGTAGTTCTTTGACATTGTGAATTCATTAGTTAAATCAGATCTTTACAGGAAGA # Right flank : GGTCTGTTGATTTCCACTGAGAAGTGTTGGGGTGGAACGGCCCACGGCATCGGATGTGCCAAGATGAGGTCGCTCAATTGACCATCATGAAAGGGCCGTTCCGATGGAATTTAAACGGATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //