Array 1 63213-61271 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOQ01000008.1 Halarchaeum nitratireducens strain JCM 16331 sequence08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 63212 30 100.0 36 .............................. GTCTAGCTCTCGCGCCGGGACGAACCGAACCATCTC 63146 30 100.0 35 .............................. TCTCCGTCCGCGTCGGCGGTCGTCGAATAGACGCG 63081 30 100.0 35 .............................. AGTTTCGGTCATCGAATCACCGAGCGAGGATACCG 63016 30 100.0 34 .............................. CGCTCGTCCGCGACCGGATCGCGGGGGGTCGAGT 62952 30 100.0 34 .............................. TTCTTGGGGGCGATGGTCCATATCGGGCGAGATA 62888 30 100.0 34 .............................. TCGTCACCGACTCCGTCGCCGGCATCGTCAAAGG 62824 30 100.0 35 .............................. ACCCTCTTTCCGACGCGATAGGCGGCGGCTCCACC 62759 30 100.0 37 .............................. GGACTGAAAGGTGTCGACGGCGCGAGCGACCTCACTA 62692 30 100.0 35 .............................. TCGACCGACGATAAGCTCGAAGCCGCCGAGACAGG 62627 30 100.0 35 .............................. ACGATCGGCATTGGCGTGGGCTCCGGCGACGACGG 62562 30 100.0 35 .............................. TCCAGCCCACCCCCCTGCGACTACGGCCGAGGAGT 62497 30 100.0 36 .............................. GAACCGGGGCGTGAAGGCGTGCCGCGACCCAGAGGA 62431 30 100.0 35 .............................. CTGCGTGCGAGCGCGCAGTTGGTCCCGTCGAGCGA 62366 30 100.0 36 .............................. CATAAGGACGTGAGCGGCTACGAGCCCGAGATTCGG 62300 30 100.0 38 .............................. CCGGCCCCGACCGCGAGGATCACTACCTGGAGCGCGAG 62232 30 100.0 37 .............................. GACGTCGAGCCGCACTACGTCGGAGTCGCGTCACACT 62165 30 100.0 37 .............................. CTACATCCTCCTCGGCCGGATCGGTGACCGGTCGATG 62098 30 100.0 34 .............................. CGGCGTCGATGGACCTGAAGTGTCCGAAAGCGTG 62034 30 100.0 35 .............................. TATCGCACCGTAGATAAGTGCGAAGATAACCCCCA 61969 30 100.0 40 .............................. GACCCACCGCCGGAGGGTCCGCGTCGTCACGTCGATGAGC 61899 30 100.0 39 .............................. GCCCGGAAACGCGTTGGTCCGCTCGTCTGCGACCGGATC 61830 30 100.0 37 .............................. GAAACAACAGAGACGGTCACCCCAAGCAGTGGGTCGA 61763 30 100.0 35 .............................. GTCCTGCACTGGGAGGAGCTGCCACGTCGCGCCGT 61698 30 100.0 36 .............................. GTGACGCCGCACGATCTCCGTCGGACGTGGGGCCAG 61632 30 100.0 35 .............................. TGCATCCACGCTGGAACAGTGAGGGGATCGGCGTG 61567 30 100.0 38 .............................. GTGAGTGAGAGTGACGGGATGAAGACGACGCCGAGGTC 61499 30 100.0 35 .............................. GACCACCCGCCGCGTCAGTCCCGACCGGAGGGAGG 61434 30 100.0 39 .............................. CCGTAGACCTCCGCGATCTGCCGTCCACCCGACCCGCTG 61365 30 100.0 35 .............................. ACCGCGTCGTCGCGCCAGACGGGCTGGTACTCGCG 61300 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ======================================== ================== 30 30 99.9 36 GTTTCAGACGAACGCTAGTGCGGTTGAAGC # Left flank : ACGCTCGCTCGAACCAAAGACCACGAGAAACTCGGCCGATCCGTTAGCTACCAGTATCTACTCCAGATTGAGGCGTACAAACTGAAGAAACACCTCCTGACTGGTGAGAACTACGATCCGTTCGAGAGGTGGTGGTAAATGTACGTCGTGTTCGTCTACGACGTCGCTGCCGATCGCACCCGTAAGCTCCTCAAACTGGGCCGCCGCTACCTCATCCACGTCCAAAACTCGGTGCTCGAAGGCGAGATCACGGAAGGAGATTTAGCGCAGTTTGAAGCCGAAGTCGACGCGCTGCTCGAACCCGGGGAATCCGCGATCATCTATAAATTCGCCTCTGAGACGTACGTCAATCGATCCACGTTTGGCGACGACCCCGCAGCGGACGCGAAATTCCTATAGTATCCATCGACCCCCCGGGGTTCTGAGGTGGATTAAGGAGCGATGGTAGCTTCTTTACGACAACGGGCAAAAGATAGGATGCCTACGGCAAATAGGGGATG # Right flank : CCGGGTGGGCCGAGGTCGTCGCCGTCCGCCTCCATAAAGCTGGGTGTTCGCTCCGCGAGACAACAACGACTCTGGACGCACTCGGCGTTGATCGATCGCATGGAGCGGTCTGGAACTGGGTACATCGGCTGGCTGACAACGAACGCGACCCGCCGACGGCGTCGCCGTCGCGGGTCGCTGTCGACGAAACCGCTGTCCGAATTAACGGCGAACAGTCTTGCTTGTACGCTGCAATTGATCTTGATTCTATGTTGATTCTTGACGTCACGTTATTTGGACGGCATAGCACTGATCCAGCAGCTGCGTTTCTTCACCGGCTCCAGCAAAAACACGATCTCGCGGGTACCGAGTTCCTCGTTGATGGCTATCGGACTGCCCTCTCTCGATTAGGGTTGAGCGGTCATCTCGACTATACCGACTGGAACCATATCGAAACGTGGGTCCACACCCTCAAGATGCGTATCGACCGCTTCCACCACTCGTGGGTGGGCAGTCGATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 142063-140708 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOQ01000007.1 Halarchaeum nitratireducens strain JCM 16331 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 142062 37 100.0 36 ..................................... TCCCCTGTTCGGAGAGGAGGAGGCGTTTCAGCTCGG 141989 37 100.0 41 ..................................... TGTTCACCGCACGCCCGCCCGACCATGTGAATTCAACGCGA 141911 37 100.0 33 ..................................... AAGGTCGTCCTGGTCCGCGAGCCACTCCCGAAC 141841 37 100.0 37 ..................................... TCGGCCTCCTCGTCGCTCGGCGCGTCGTCCACCACGT 141767 37 100.0 37 ..................................... ATGCAGATGGGGGTGTTTCGGCGTGAGTCGTATGCAG 141693 37 100.0 36 ..................................... ACGTCCGCGACGCGACGCTTCAAGCGCACCACTACC 141620 37 100.0 37 ..................................... GAACCTCGCACGTGGCGAGGACGCGCCGGGGAGGACC 141546 37 100.0 35 ..................................... GGTCGTCGACGAACTCCTGGGCTTTCTCCCGGATT 141474 37 100.0 38 ..................................... GCTGTGGTGGTCCGACGCAGATCAATATGGACTTGACA 141399 37 100.0 35 ..................................... ACCCCTGCTCGTCGATCGAGTCCGCGACCTGCTCG 141327 37 100.0 36 ..................................... ACGGATCGACGACGTCCTCGACGTCGGGCTCGTCGT 141254 37 97.3 33 ....................T................ GATCGACGGTGCGATCAGTAAGGGCGCGATCGG 141184 37 100.0 37 ..................................... TATTGATCCGCAGCCAGTCGAGGGCATCCGCGTCACT 141110 37 100.0 38 ..................................... AGCGCGGTGTGGTACCGGAAGCAAACCGCGAACGGCAA 141035 37 100.0 35 ..................................... ATCCTGGGGGCCGTGCTGTGCGAGTTCCGCGACCT 140963 37 100.0 35 ..................................... ACCCGGTCGCCCTCAAGGAACTCCGACACGCTCAC 140891 37 100.0 35 ..................................... GGCCGGACGCGATCGTTGTCGACTCCGACTACTTC 140819 37 100.0 36 ..................................... CGAGGAGCGCGGTCTGATGAACGTGAACGACGTCGA 140746 37 89.2 0 ..............................G..G.TG | C,A [140714,140716] ========== ====== ====== ====== ===================================== ========================================= ================== 19 37 99.3 36 GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : CTAGAGGCGGCAGATGGAGCTGTCGTACTCAACTTCGATGGGGGGCCGCGAGAAATCTTCCTGCCGTTGACCGTCGCTGCGATTGCTCGACCGACCGTCGTTGACCTCGCTCTTCAGTTCAGAGACGTGGACGAAGAGATCGAGGAGCTCACGATTCCGAATCTAATGAGTCGTCCATCGGATGCGACCCTTGATACGCTCCGCTATCTCGTCTCTACTGCTGAAGAAATGACACTCCCCCAGCTCTCCAATGAGACTGATAAATCTCGGAGTACCGTCGGCCGACATCTCGATGCACTTGAGGCCGATGGCGCTGTCGAGACGTGGATGGAGGGGAAAACGCGCCACGTCTCTCCGACGCTCGCCGGTCAACTTCGCGTATGAGCACCATCTTCGTGGACCCTTTTCAAAGCCGTGGACAGGTGGGGTCCACGAATCAACTCTCCTCTCATGCGTCTTCAGAGAAAAGTATAGGTGCTTTGCACCGAAATAAGACCCCT # Right flank : CGTGCGTTCGAGGTGTAACACGCTAAACGCGATTCCGAGGCCGGCGCTGGCGCTCAGTACGACTTGTACGCCGCTTACCGATCGACCCACCCTTGGACGGAGCACGCCGACTGGGGAGTTCGGGTTCCCGAGCACGCTCGCCGTTAAGACGAAACTTCCGAGAGCGAGACAGCCCAGACCGACCTTCGGGACGAAATCAACGGCCAGCGAGAGCAAACTCATGACTCGGGCGTGATCCGAAAGTGGTCGATGACCTCGGCGAGGAAGCCAGATGCGAATATGAATACGAAGGCGGCCGTCGAGATGTCCGTGAGATCAAGGCCGAATATCTCACGCGGGATCGGAGTAGCGGCGTAGATGATGTGTAAACACCACAAGGAGAGCGGTGTGAGGACGAACACAGAGAGGGCGATCGGAGCCTGCGCTGACGGCTCTTCGAGACTCGCGCCGAGTGCGAGGGCTACTGCCGAGCTCGTGAACAACCACGTTCCGAGCACGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 2 152954-154607 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOQ01000007.1 Halarchaeum nitratireducens strain JCM 16331 sequence07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 152954 37 100.0 37 ..................................... GGAGAGGATCGCCGCAATCGTCCTGCGCGGTCGTCGC 153028 37 100.0 36 ..................................... CGGATATCCAGGAAGCCACCGTCCACGCGAGCGCCG 153101 37 100.0 35 ..................................... AGTGGGCTCCGACACCGCTGAACGGCGGAAGTGCG 153173 37 100.0 37 ..................................... ATCCCCCCGATAATCGACGAGAGAGTCCGCTGCACGC 153247 37 100.0 37 ..................................... CCCCCATCATCGTCGAGGCCGACGACCGCCGCGAGCG 153321 37 100.0 34 ..................................... GTGCCACTCTGCGGTGTCTCGACAACCTCGACGT 153392 37 100.0 36 ..................................... ACGTCTTCGAGTAGTCCTACGTAGCCGGCTCGCTGG 153465 37 100.0 36 ..................................... AGGATTCCCTGTAGGTCGTGGGGGATTCGGATGGTC 153538 37 100.0 36 ..................................... AGGGGGAGGACCCCCAGGACGACGGCGGGAGTTCGA 153611 37 100.0 46 ..................................... ACCCCGAGCCGGACCCCGTAGTCGACCCCGTTGATGACGGGGCCGG 153694 37 100.0 35 ..................................... CGCTTGACGACGCCGACGACGTCGAGGACGCCGAC 153766 37 100.0 37 ..................................... ATCGACCGGACGACGAGCTGGTCAGCCGCCGGGTTCG 153840 37 100.0 35 ..................................... TTGCCGGGGCCCTGACGGCTGGACATGAGGATGCG 153912 37 97.3 36 ........................G............ CGTACTGGCTCGCCGCCTCACGCACCCGAGCGAGCT 153985 37 100.0 36 ..................................... ACATCGGCGCACCGTCCTCGTTGTCGTTGTCGGCCT 154058 37 100.0 37 ..................................... CGGGCGCATCGGCGGCTCGACGACGTCGGTGGAGGGC 154132 37 100.0 36 ..................................... ACTATCTCTCGTGGTCGATCGGCGATCAGGACTATT 154205 37 100.0 37 ..................................... GTGGGGCGCAGACGCTCGGCCAGGATCGCGAAACCGA 154279 37 100.0 36 ..................................... TGTAGTCGGGTGAGTTCGGCCCGGACGAGCCGAACC 154352 37 100.0 37 ..................................... ACGGGACGCGCGACGTCGACGTCGTCGGTCCCGACGG 154426 37 100.0 35 ..................................... CGCACCTCCCGGTCTGGGAGGTTCGGAAGCGGGTG 154498 37 100.0 36 ..................................... CCGTCGGACCGGGCGACCTCGTCGTCCTGACGGGGT 154571 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 23 37 99.9 37 GTCGAAGCGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : CACTTCGACTATCGCGTGAGCCGTCGGAAGGCGATCCGACAGCAAGTGATCCTCCTGCGGAAAGCGATCACAGGTGAACTCGACGACTACCACGCGCTGGAGGTATCGAGATGAGGTTGGCAGTGACGTACGACGTCAGCGACGACGGGAATCGGCGGCGCGTCTATCGGACGCTCGAACGATACGGCGCGTGGCGACAGTACAGCGTCTTTGAAGTCGATGTCTCGAAGAGCCAGCGGGTCGAACTCGAAGACGAACTCGAGAGCCACATCGAGCCAGCTGATGGCGACCGTATTCGATTGTATCGACTCTGTGAGGCCTGTCAGAAGGCGACGACCGACCTCGGAACGGAGCCACCGGACGAGCAGTCGAACGTTATCTGACGTCCCCCCTTCGTGGACCTTTTTCAAAGCCGTGTACAGCAGGGGTCCACGAACAACCGCCGCTCTCTCCTACCGTCAGAGAAAACTATAGGTGCTATCCCCGACAAAACACCCCCT # Right flank : CCGCCGTTCAGGACGTACACCGACATTCCGGACACGCCAAGGATGACGTTGGCAGGAACTGACTGACTGAGTGAGAAGATCGGCTTCCGACTGAGAGATCACCCAAAACGAATGCATATCCGAGGTAGATAACGAAGGCGATAACGCTCGCTCCGGGGCCGAGTTGGCCTAGGCGGACGAGCGCGATGCGTCCGTATGATGCCGTCGCTCGTTTTCCGATACCGTGCTGGTGGACGTGATATTCTCGCTACTTCCAGGTGAACCACCGTGAGAGCCACGAGCGGAACGTCCCGTGGCGCTTGACCATGATGACCGTGCCCTTCGCTCGTTCGCCGACAGCTTCGGGAACGGCCCCGAAGACGAGTTGTTGGAGGAGGCCTTCTCGTGACGACCCGATCACGGTCACGTCGTATTCTCCCGACGCGTCGACGATTTCGTCCACGACGTTGCCTTCAAGAACGCGCGTTCCGACCGTGACGTCGTCGGCGAGCGTCGATACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA //