Array 1 179777-179629 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTMO01000002.1 Escherichia coli strain YH17174 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 179776 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 179716 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 179656 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTGCGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAAAGGTAAGGATAAAAAAGGGTGACAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGACTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 99954-99315 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTMO01000007.1 Escherichia coli strain YH17174 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99953 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 99892 29 100.0 32 ............................. TCATGAAGACTTCGATTATTTCTTGATACCTG 99831 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 99770 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 99709 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 99648 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 99587 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 99526 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 99465 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 99403 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 99342 28 72.4 0 ..A........C..T....T-.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127119-125500 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTMO01000007.1 Escherichia coli strain YH17174 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127118 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 127057 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 126996 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 126935 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 126874 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 126813 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAAAAT 126752 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAAACT 126691 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATC 126630 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 126569 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 126508 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 126447 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 126386 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 126325 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 126263 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTCA 126202 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 126140 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTATG 126079 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 126017 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 125956 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 125895 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 125834 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 125773 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 125712 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 125651 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 125590 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 125528 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //