Array 1 126711-127158 **** Predicted by CRISPRDetect 2.4 *** >NC_014532.2 Halomonas elongata DSM 2581, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 126711 28 100.0 32 ............................ TCCCGGCGGACGGAAAGCTTGGCAGACCAGCG 126771 28 100.0 32 ............................ AAGGCATAAAGATGAATACATTGAGCTCCCAT 126831 28 100.0 32 ............................ CAGTGCAGTTGCGAGATCTGTTTGCCATCGTT 126891 28 100.0 32 ............................ GTAAGCGCCGCATGCTGTGGGCGTCACGCCCT 126951 28 100.0 32 ............................ TTGCGTCTCGAAGTCCTCAAAGCGCGTAGCAT 127011 28 100.0 32 ............................ ACATTGCAGCCGTGACCATTCTTGCTGTGATC 127071 28 100.0 32 ............................ CAGCCGTCCTGGCTGTAGTCGCTCAGTTGGCA 127131 28 85.7 0 ........................CTCC | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AGCGGCTCGAGCAACTGATGGCGCTGTCATGGCTGGCAGGCATGCGCGACCACGTCGAGACTACCGATATTGCGCCCGTGCCGGCAGCGGCGCGTCATTGTCGTGTTACTCGGAGGCAGTTCAATACAGGCGGCCCAAGCCGGGTCAAGCGCTACGCGCGCCGCCACGACATTAGCGAAGACGAGGCGCGCCAATGCATGTCGGTACCTGCTAAGCGCAAGATCTCACTGCCGTTTGTGCAGGTGAACAGTCGGTCGAGTGGCCAACGTTTTGCGTTGTTTATCGAACATGGTGAACTCCAAGATGCCCCCATGACGGGACACTTCAACCACTATGGCTTGAGCCGTGAAGCAACCGTTCCCTGGTTTTGACCCTTTTTCGGGAGCCTCTGTTGAGGCCCAGTAAATCAATGAGTTAGCGCCGCTTCCTAGAAAAGGGTGTGGCGCTTTCTTTTCACGAATGCTCTTTAACAATCAGCTGGTTAGCTATGATAAGCTCTT # Right flank : CTCCCTAACGTCCTTCAACCGGTCGGGGAAGTTGGTGAAGAGGCCGTCGACGCCCCAGTCGAGCAGTTGGCGCATCTGGTCTTTTTCGTTGATGGTGTAGACGTGCACCAGCAGGCCGTTGGCGTGGGCCTGGTCGATGAAGTCGGCGTCGATCACCGGTTGGCCGTCGTAGAGGTAGTTGGGTCCGACGCCGTCGGCGTAGTCGGCGATGGCCTGGAAGTCGGCGTCGGTGATGTCGGCTGGGCTGGGGGTGACACCGGTCCATTCTTCGAGCGTCTGGCCGTCTTCGCCGGGGGAGTACCAGAGAAGCTGGACGAGCGGGATGTCGGGGTTGAGGTCGTGCACTTCCTTCAGGCTGGTCTGGCTGAAGGATTGGATGACCACCGAGCCCGATTGCACCAGGCCTTCGGCCTCGAGCTTGCTGACCAGGGCGTCCTGCAGTTCGGGGTAGTCCTTGGGCGACTTGGTCTCGATGTAGTAGCGCACGTCCTGGCCGTAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.90,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3857594-3857444 **** Predicted by CRISPRDetect 2.4 *** >NC_014532.2 Halomonas elongata DSM 2581, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3857593 28 96.4 33 .......................A.... GCGCGCCGCCCTGGTGCCAGGCATCGCCCTGGG 3857532 28 100.0 33 ............................ GTACTCCTCTTGTTCACGCTTGTGCTCGAGCAG 3857471 28 89.3 0 .............T........C...G. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 95.2 34 CCGGTCCCCGCACCCGCGGGGATGAACC # Left flank : ACGACCGACGCCGAACGCCTCACCAATCTGACTGGCGGCTACCCGACCTTCCCACAGTGACAGAATCTCGATCAGCCGATAGCGTGCCAGGGTATCCCAGGCAAGGGGCGTGTGCGCATTCATGACGGCCTCCATCCATGGTTGCCATATTCGATCCCGATGATAATGCCTCGAATCGGGGCCGGGTTGAAGAGTCGTGTGGATGGATGTTCAGAGGTGGCGGGAAGGCAAGGAGCGTGCTTGGATGGAATGTGTCGCGTCACCTGGGCAGGGAGGCCAGGGGAATGATGTGATAGCGCCATTTGCCGCCGCGTCGCGGTCTGGGATGTCGCTGCTATTGGGTGGCGAATGGGCACGGTTGGTGCGATTTCTACTGCTTTAGACAACTGGCTGATTTTATTGGCTCTTTAATAATCCAGACTGATCAAGAAATAAGCAGAATCGCCGGTGGAAATTCCATTGGCGATTTTCCGCTTGCAAAACAAGTGGCTACACTTGGA # Right flank : GTAAGAATGCTCAAGACCCTCGAGATGGTCGGCCTGGCAGGCGGTGTGTCACAACGCGGTAGCGTCGAGGGCACCGTCGATATGGGCCTGCCATAGTGCCTGGTCACTGCCGGGGCGGCGCAGGGTCAGGGTCAAGCGGTAGGGCAGCAGTTCGCGGTCGGAGAGTTGCAGGCGTGGTGCCGAGGCGTTCAAGCGGCTGTCCAGGCGCCATTGGTTGCGCCCTGCGTCGGCCAGGGCGGGGCGCCAGTCGAGCACCTGGGGGCCGTCGTCGAGCCCGAGCAGGGCGCGGGTCAGGCTCTCCATCAAACGCTCGTCGGAGAGTCCCAGGTCGGGGTCGATCTCCGGCGTGGCCAGCAGCAGCACCTGATCGGTGGCGGGCGTGGGCAGTGTCGGTGAGGCGGCCACCTGTTCGGCGGCGCGTTCACCGAGCCCGAACAACGCCTGACGCACGGTCTTGGGGCGTTCCGGAGCGGCGGCGCAGCCGGCGAGGAGAACCGACA # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGTCCCCGCACCCGCGGGGATGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //