Array 1 79034-78762 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHF010000016.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
79033 29 100.0 32 ............................. GCCAACGCCGCCAGTGCTGTTAAATCGCGTAC
78972 29 100.0 32 ............................. AAATAGACGACCAGATAGCCGACCAGATTGGA
78911 29 100.0 32 ............................. CCAATAAACGTACCGCGCTAAACAGTGCGCTG
78850 29 100.0 32 ............................. GACTCCGTTTTTAAAAGCAGCCCGACGAGATT
78789 28 86.2 0 ............TC...........-..A |
========== ====== ====== ====== ============================= ================================ ==================
5 29 97.2 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG
# Left flank : TGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATATGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTCTCTACAAATTCTGTGGCGTTAATTTTTCTCTGGGGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : TTCAGGTATGTTCATGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCTGCATTCCCCAATTCCCCATGCATCACTTCATACGATTTTTTCAGGATCACATCAGTGTGCTTGGTTAGGTCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCGTTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGGCTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTTGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG
# Questionable array : NO Score: 5.92
# Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.92 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 38832-38132 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHF010000025.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
38831 29 100.0 32 ............................. TCGTTGAAGACTATGGCAAGTGCGCGATGGTC
38770 29 100.0 32 ............................. AAAAAAAACGACGATTTAATCACTTTACCATC
38709 29 100.0 32 ............................. GCTTCACTGATTTCAGTAACGGCTTTGATAGC
38648 29 100.0 32 ............................. CAGGGTATGAAGTAGGAGAGAAGGCACTTCGT
38587 29 100.0 32 ............................. TATCTTATAAAACCGGCACAGAGAAATATTAC
38526 29 100.0 32 ............................. CACTAATATCAACAATACCGTGGCACTGTATT
38465 29 100.0 32 ............................. GACTTTTTTAATATTCTGAAAAAGAAAAAAGG
38404 29 100.0 32 ............................. ATGACGCCCGGCGAAGTGGTTAGCTGGCGTGA
38343 29 100.0 32 ............................. TCAGAGACGGCGTTCTGTGCTTCCGTCGTGTA
38282 29 100.0 32 ............................. TAACCGCCACCGTCCGGCAGGCGGATGAAGTG
38221 29 100.0 32 ............................. ATTAGATACTCCGTGTCCCAAATAAGGAAAAA
38160 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================ ==================
12 29 100.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG
# Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAATGCTGGGTGATAGCGGTCACCGGGGGCGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCTGCAAATCACCCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGGTACAGTTGGTTTCGTTTCTTCCTTTTGATAATCAATAAGTTATCCGTTATTAAAAAATAAGTAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTGAAAACAAACGGATATGCTTAGT
# Right flank : GCTCACTCTGATGCAGTTTATGTAATTCACGAGTGTTCCCCGCGTGCGTATTTTCATGGAAGGAGATCAGTGAAGGTAATTTAAAAATGCCGTTACTCACCGATCTCCTTCACGATAATACGCAGTCAGTTTGCAAATAATCCCCCCATCTTTTGCAATAGACGTGTTTTCTCTGGTGGGGTGATTACCCAGTCTTTTTTACTGTGTCTGACCTTTTGTACTGTAGTGCAGTTGTAATGCAAACCTCCCGGGCTTTTGGGAGACAGCATTTCAGTCCTGGTTCCATCATTACCATTTTGTTGATTCGAAACGAAAACCTTCATCAAAATCGATCGATTTTACCGATCGATATGATCGCATCGATCGGTTGTAACCATTTTACCCTATCTTTTGCATGGTTTTAAAATAGGCAACCCTATTTGTCGGGTAGGGTAAGAACCAACGGAGATGATTGAAATGAAAAAGGTTATTGCGGTTTCAGCGCTTGCAATGGCTGGCAT
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.14 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//