Array 1 60584-61650 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJFA01000001.1 Klebsiella pneumoniae strain EuSCAPE_RO072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 60584 28 100.0 33 ............................ TAATCTCGAGACACTCCTCGCGCAGCGCAGACG 60645 28 100.0 33 ............................ CCCGGTTACCAGCAAGATAGATTTACTGCGGAC 60706 28 100.0 33 ............................ TGACCCCGGCTGATTGGGCTATATGCAAAAGGC 60767 28 100.0 33 ............................ TGGCCGAGCTCTGCCTGACGATTACGATATCAG 60828 28 100.0 33 ............................ CAGCGTGACATTGAAGATATCAGTTTCGTCATG 60889 28 100.0 34 ............................ CGAGGTTCGAAGGCTGGATAACCTGCCGCCGCTG 60951 28 100.0 33 ............................ TATGGAGTTGGTTTATACTGGCTGGGTCGATAA 61012 28 100.0 33 ............................ CCCAGATGCGGTTTTCGCCCGTTCGAATATGTT 61073 28 100.0 34 ............................ CTCTGTTGAATCCCTGATATCTGCAAATGCCTGG 61135 28 92.9 33 ..............T........A.... TTGTCGAAGGGCATATTGACAGAAACCCTGCTG 61196 28 96.4 33 ........T................... TCGGTGTTCGTCCGGGTAAACGTGCCGGTGAGC 61257 28 100.0 33 ............................ TCAACTTGCCGCCCTCGATTACGCCGATGTTGA 61318 28 100.0 33 ............................ TTTGATGAGGAATATGTAGTTTTCCCTGGCGTG 61379 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 61440 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 61501 28 89.3 33 ............C.........G.G... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 61562 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 61623 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================== ================== 18 28 98.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCGTCAAGACGTCGCGCTATATTCTGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCCAGTAGGGTAGACCGGCCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70404-71776 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJFA01000001.1 Klebsiella pneumoniae strain EuSCAPE_RO072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 70404 28 100.0 33 ............................ CAACGCAACGGGAGGAAATGACGGTGCTCAAGA 70465 28 100.0 33 ............................ CAGCATTGTCCAGGTGGGCGTAGAAGCGCTGAA 70526 28 100.0 33 ............................ TTCACGGAGATTACGGACTAAAGTTGCAAGGCA 70587 28 100.0 33 ............................ CTGTCAAACGGGACGGTCACTGTCGAGACGATC 70648 28 100.0 33 ............................ TCCTGGTCGATGATGTACCACTCAGGGAAACCT 70709 28 100.0 33 ............................ TAACTCGATCCGCGGAACATCGCCGTAGAGCAG 70770 28 100.0 33 ............................ CTTTCTTCCACGGCACCTCTGAAGATTCAGCGA 70831 28 100.0 33 ............................ TCACTATCAACACCGAAAAAACCGCCGTCAAAG 70892 28 100.0 33 ............................ TCGGGGCTTTGCTATTCTGCTATTTTGCTATTC 70953 28 100.0 33 ............................ CGCAACCACTGCCACCGATCGCATCGTAGCCGG 71014 28 100.0 33 ............................ TTGTTGGCGCGCCATAATCGCAGGCGCGCAGTT 71075 28 100.0 33 ............................ TTCGTCGCCCTTTTAGCCGCTTGTGTTCTTGCC 71136 28 100.0 33 ............................ TCGGGTTTTTCGATACAGGTGTCTCTCGCGACC 71197 28 100.0 33 ............................ TACTCGCGATTTTCGACGGCCCCCGTAGACCCC 71258 28 100.0 33 ............................ TCCAACGACGATCTGGTGTAAGCCATGACGTTC 71319 28 100.0 33 ............................ CCAGTGGATCAATAACGTCGCTGTAAAATTTGG 71380 28 100.0 33 ............................ CTGATGGAGGAGCAAAAACGCTACAACATGGTC 71441 28 100.0 33 ............................ TTGAGACGACCGGCGAAACCCCGTCATTCGTGT 71502 28 100.0 33 ............................ TCGATGGGTCCAAAGTCACCGGACCGAGCTGGC 71563 28 100.0 33 ............................ CGCCAAGTGGAAGCCGGTTTACCGCGTGACCTT 71624 28 100.0 33 ............................ CGAGTTCGCACGCCACGATCTCGCAGGAGAGCA 71685 28 92.9 36 ...........A..T............. CTACCGGCGCTGACTGCGCATGGCGATAGTAGATCT 71749 28 67.9 0 ..........T...T.C....T.TAGCA | ========== ====== ====== ====== ============================ ==================================== ================== 23 28 98.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAAGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTAGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : ACTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //