Array 1 3072313-3072821 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_014315.1 Nitrosococcus watsonii C-113, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
   3072313	    28	 100.0	    32	............................	TTTGGGCGAGATGTTGTGGGCCGGTTGCCAAG	
   3072373	    28	 100.0	    32	............................	AGTAAGCAGAAGTCGAACGGGTCATTGCACTG	
   3072433	    28	 100.0	    32	............................	CCTATCTTGACGTTAGAGAGTATGTCTGGACG	
   3072493	    28	 100.0	    32	............................	ACGATGGGCAGGTTACAAGCAATGCGGTTAAA	
   3072553	    28	  92.9	    32	..................A.C.......	AGTATGTTTAATTAACTGCTTTTACATTAGAT	
   3072613	    28	  89.3	    32	......T...........A.C.......	CTTAGGACAGCAGCGAATGGACGCAAAACAGA	
   3072673	    28	  89.3	    32	......T...........A.C.......	CATCAGTTGCCGGAGTTATTTCATGTATTTCT	
   3072733	    28	 100.0	    32	............................	TAGATTTCTTTCCGTTGCAGCCATTTTACGGA	
   3072793	    28	  82.1	     0	......T...........A..AA..T..	|                               	T [3072818]
==========	======	======	======	============================	================================	==================
         9	    28	  94.8	    32	GTTCACCGCCGCACAGGCGGTTTAGAAA	                                	       

# Left flank :   GGAATGATTGCAATCAAACCAATAGCAACCGTGCCTCCCGATGCGATTGCAATTGCTTATCGACGCGATCGTAGCGCAGAGAAAGATTTAGCAGGGTTTAGGCAGCGGCAGATGCGCCGCCGAGTCCGGCGCGCCGAACATGCCCAAAACCAGCCGGAAACGAGCTTGAGAATAGAGGCAAAGAGCAGGCTGCAAGATAACGAGAAGGCGGAACGGCCACCTTATTTACTATTAGAACGGGAGGGCCGACGGCTGCCTATTCATATTAATACGGCAAGCCTTCAGATTAATACGAATATTTGTCAGTTCAGTAGCTATGGATTAGCCAGGAAGGTTGAAGATAAATATTCGGCCGTACCCATGTTCTGACCTTACTTTATTTTATGGAACAAAAAATCCAATAATAACAAATAATTAAATGAATTTTAAAAAAGGAAGGTTGTAGGCTAATATTCGACACAAGACTTTATCATTGCTACAGTTTTTAGCTTTAATTTACT
# Right flank :  ACAGCTTTCGGCTTGCTCCAGCGTCGTGAGTCGCTGCTCCAACTCACGGACCTTTTTGCGCAAATCCGAAAGCCGGTTTAGCTCCGCCAGCGCCCTGCGGTTTTCCATCATAGGCTGGACGGGGCTACCAGTCATAATGGCCTTGGGTGGCACATCTTTAGCCACCCCGGATTGAGCAGTTATCACAGCCCCATCACCAATCCGAATATGACCCACTAACCCTACCTGGCCCGCCAGGGTCACCCAATTACCAATTTTGCTACTCCCGGAAATACCCACCTGGCTAACAATAATGCTGTGCTCGCCGATCTCTACATTATGGCCAACTTGAACCAGGTTATCGATTTTGGTGCCCCGACCGATTCGGGTCGGTCCCAACGCCCCCCGGTCAATGGCGGTATTGCACTGTACCTCTACATCATCGGCAATCTCCACCCATCCCACTTGAGGCACCTTAAAATAGCCGTGAGGAGGGTCCGGCGCAAAGCCAAAACCATCGC

# Questionable array : NO	 Score: 6.00
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACCGCCGCACAGGCGGTTTAGAAA
# Alternate repeat :   GTTCACTGCCGCACAGGCAGCTTAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-9.70,-9.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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