Array 1 8619-11268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFEP010000009.1 Klebsiella pneumoniae strain 16047 scaffold9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8619 29 96.6 32 ...................T......... GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 8680 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 8741 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 8802 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 8864 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 8925 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 8986 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 9047 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 9108 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 9169 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 9230 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 9291 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 9352 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 9413 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 9474 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 9535 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 9596 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 9657 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 9718 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 9779 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 9840 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 9901 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 9962 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 10023 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 10084 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 10145 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 10206 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 10267 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 10328 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 10389 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 10450 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 10511 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 10572 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 10633 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 10694 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 10755 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 10816 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 10877 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 10938 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 10999 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 11060 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 11121 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 11182 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 11240 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2648-1588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFEP010000015.1 Klebsiella pneumoniae strain 16047 scaffold15.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2647 29 100.0 32 ............................. TAACTTTACCCCGGATCCTGATGAACCTGTAC 2586 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 2525 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2464 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 2403 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 2342 29 89.7 25 .....T......CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [2289] 2288 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 2227 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 2166 29 93.1 32 ............CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 2105 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 2044 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [2033] 1982 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [1970] 1920 29 93.1 32 ............CA............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [1909] 1858 29 89.7 32 ............CAC.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1797 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1737 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1676 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1615 28 79.3 0 ..........A.CA..T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 92.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //