Array 1 342861-337783 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOO01000003.1 Halarchaeum rubridurum strain JCM 16108 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 342860 30 100.0 34 .............................. GCCGACTCACCCAACTGGCGTGTTGTCACGGTTG 342796 30 100.0 36 .............................. ACTCGGTTCGTCGGCACCCACTTGATGCAGTCATTA 342730 30 100.0 34 .............................. CTCTCCTACGGGAACCGAAGCGGCCTCCAGGGTG 342666 30 100.0 38 .............................. CAGAGCTCCGTTAGACTCTGGGGATCATCCGGCTCCTC 342598 30 100.0 36 .............................. CTCACTCGGTCGTCCCTGCGGTCCTCCCGACCTGCG 342532 30 100.0 36 .............................. CACTGGTCGGGCGTCGTCGGCTACCCGAGCATGCGC 342466 30 100.0 36 .............................. GATAATCTCGTCAGCATCGTCCGGGAGGCGGACGAG 342400 30 100.0 36 .............................. CTCCTCCAGCTCGTCGAGCGTCGCCGTCTTGAGTGT 342334 30 100.0 35 .............................. CCGTACATCGGGAGCAAGACGTACCTCGCACCGTG 342269 30 100.0 34 .............................. GAGAGCGCGATCCGCTCCTTGACGGTGTAGCCGT 342205 30 100.0 35 .............................. GGCTTTCTCGACCTTCTTCCGGTGCTCCGGCATCG 342140 30 100.0 37 .............................. ACGAACTGCGCGAGCGCATCAAGGACGGACGCATCGG 342073 30 100.0 36 .............................. GACGACGTCGAGAGCGAGGACGTCGCGGAGGACGTC 342007 30 100.0 37 .............................. CTCTTGCTACGCGGTCTTTTGTGGCGGTAGTTTGATA 341940 30 100.0 36 .............................. ATAGGCTACGGACCTCGGCGTCCGCCGTCTTCGTTC 341874 30 100.0 34 .............................. TCGGAGAGCCGCCACTCGAAGTGGAACCGCTGAC 341810 30 100.0 35 .............................. TCCGTCACGGCCGTCACAGTCGCGTTGAGGCCGGG 341745 30 100.0 35 .............................. CGGGTTGCAGTCAGGTTGTGGAGTGACGCCTCGGT 341680 30 100.0 38 .............................. AGGAACCCGGCAGGGATGATCATGTGGGGGCTGGCGGT 341612 30 100.0 35 .............................. GATCCGGGGCGCGCGAAGAAGCTCTACGCCGGGTG 341547 30 100.0 36 .............................. GACGAAATCGGCGCTGGGGCGGACTCACGGCGTGCA 341481 30 100.0 37 .............................. TTGGTCGGGAGTCTGGCCGCGACGGGCTGGCTACCGC 341414 30 100.0 36 .............................. GTGTATCTCGTTGGTGATGGTGGGTCGGCGGAGGTG 341348 30 100.0 35 .............................. CTCGCGTTCTTGGCGGCTCTCGCGCAGGTTTAGGC 341283 30 100.0 36 .............................. GACCGCGTCGAGCGCGAGGGGACGTGGCTCTCGAAC 341217 30 100.0 33 .............................. AACTTCGAGGAGGATTACGTAGACCAGTGGGGG 341154 30 100.0 36 .............................. CTGCTCGACGTCCTCGTCGAGCGCGTCGAGCGCGTC 341088 30 100.0 35 .............................. TGCTAGCTCTCCCCGTCCCCCTCCTCGGCGCCGAG 341023 30 100.0 35 .............................. GATAAGTACGTATCTGACCAAGAGGTATCGAATCA 340958 30 100.0 36 .............................. AGAACGGACGCGTAGCTGCACGTGCCGCCCGACGTG 340892 30 100.0 36 .............................. TGTCAGTCATGGAGAATCACCCGAGCCACGAAGCGG 340826 30 100.0 36 .............................. GGTCGTGGGACGTCGACGGCGAGACCTGGCACGTCG 340760 30 100.0 35 .............................. GTCGACGGCCGCCAGGCACGCCTCAACGAGCGACG 340695 30 100.0 35 .............................. AACTCGCCCGCCGCGCGCTTCTCGACGAGCGCCGG 340630 30 100.0 35 .............................. TTGCGGTGTGAGTGGTTTGGGACGTCTTGGGTCGA 340565 30 100.0 37 .............................. TCGACGGCTCCGAGCTGCAGGCCGACGGCTGTCGTCG 340498 30 100.0 34 .............................. CAGAGCTCCGTTAGACTCTGGGGATCATCCGGCT 340434 30 100.0 34 .............................. TCCGTCACGGCCGTCACAGTCGCGTTGAGGCCGG 340370 30 100.0 34 .............................. TCACCGATCCTGTGATTGTTATTCGATAGGTCCA 340306 30 100.0 37 .............................. TCCGTGCTCGTTGCGCGCCGTGAGTCCGCCCCAGCGC 340239 30 100.0 35 .............................. GTCGACGTCAATCTCTCGTTAACGCGCGTCGGCGA 340174 30 100.0 36 .............................. CTGCGAGGCTTGCTGCTCAGCCTCCTCAACTTGCCG 340108 30 100.0 36 .............................. TGAACAAGCCGAAGGGCAGTGCCCTCCTCTTGGACG 340042 30 100.0 36 .............................. CTTGAGAATCCACGCGGTCGACTCCGATGGGTGCTC 339976 30 100.0 35 .............................. ACGTTGATCACTCGCTGACAACGGACTACCAGTCG 339911 30 100.0 36 .............................. TCATGATTACCCGCGAGGCTGAAGTACGTACACGGC 339845 30 100.0 33 .............................. GCGGCGTCGCGTCCGAAACACCCTCAAGACTCA 339782 30 100.0 36 .............................. GCGGCTACAACGCCGTTGCGTCCGTGAGTGAAGTTC 339716 30 100.0 35 .............................. CACGAGTTGGGGTATGGGGTGATGCGTGCGCCCGC 339651 30 100.0 40 .............................. CGTCGTTTATCAACTCGACTGAGAGCGGGGCGATTGATGC 339581 30 100.0 35 .............................. GTCGGGGTCGCGCTCAGCTACTCGGGGCGCATCTG 339516 30 100.0 36 .............................. TCTATCTCTGTCACAACAATATTTACACAACCTATA 339450 30 100.0 35 .............................. GTCCACGGCAACGACTTCGCGCCCTTGAAGGCCGT 339385 30 100.0 37 .............................. GCCGCGTCGAGCTCCGAGTCCGGAATGAATGGGGAGT 339318 30 100.0 37 .............................. ACCACAATGTACGATCACATCGTTAGCTTCCGCGAGA 339251 30 100.0 35 .............................. AGCGCCGTCGTCCGCGAGAATCTCGATGACGCGGA 339186 30 100.0 36 .............................. TCCTCGCGGAGTGACGCCGAGGATGCCGCCGAGACG 339120 30 100.0 36 .............................. GTGGAAGAGGCGTAGGGGCACGCCGAGAAGGATGCC 339054 30 100.0 35 .............................. TTCGAGGTCAGCGACCCAGCGGTCGTAGTCGCGGC 338989 30 100.0 37 .............................. CCCGTACTGCCGCCGAGCAGGTCGAGAATCGGGAACG 338922 30 100.0 36 .............................. ACGAAATGGATATGCGGAACCTCACCACGGCTCTCG 338856 30 100.0 36 .............................. GGAACTCGTCAACGTCTCCCCCGACTGCATCGTGAA 338790 30 100.0 35 .............................. CACTTCAAGGACGTCCGCGCCCTGCTGCTCGGTTT 338725 30 100.0 36 .............................. GCGCTCACTCCGCTCGATGAACGACCCCCACTCAGG 338659 30 100.0 36 .............................. GTAGACCTCCATCTCCTCCGTGTAGTCATCCGCGAG 338593 30 100.0 36 .............................. GACGCGGTCGGCGGCGATAGTCGTCAAGAAGTAGGC 338527 30 100.0 36 .............................. AAGTCGGTGACCCCGTCACGACCCACACAACGATGT 338461 30 100.0 36 .............................. GGGGCCAACGGGGTCAAGTGTGCGTGCATCCACCTC 338395 30 100.0 37 .............................. GGACGTGTCCCGTGGCTCGGGCGGGCAAGGTCCGACG 338328 30 100.0 35 .............................. CTGACGAATACGATAGAATCTAATACAGCCCACCT 338263 30 100.0 33 .............................. GCAAAGCCATGCGGTATGCGGCCGAACGCGGCG 338200 30 100.0 35 .............................. TCTGCCTGGCCGGGACTGGTTATCTGGCTGGACGC 338135 30 100.0 33 .............................. ACTCGGCGCGCTCTCGTCACTCTCACGCGACGT 338072 30 100.0 35 .............................. GAGGAGGCGGCACGACGGACGGGAGAGCGTGCGTC 338007 30 100.0 35 .............................. CTGCTCGACGAGGAGGAGTGGACGTGACCGATCAC 337942 30 100.0 34 .............................. CGAGGGTGCCGGTGACACGGCGTTCAGCGACGTC 337878 30 100.0 36 .............................. GCAGACCGAGCAGAGCGAGACGTCCGCGTCGACGGT 337812 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 78 30 100.0 36 GTTTCAGACGTACCCTTGTGGGGTTGAAGC # Left flank : ACACTCGAGCGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGCATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGATGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGATAGGACCCACCTGATGCTAAAGCTCTGTCGCCGCTATCTTATTCACGTCCAGAACTCAGTACTGGAAGGGGAAATTTCGGAGGGAGATCTAGCGACACTGAAAGGGGAGATTGAAGATATCCTTCAGGAGGGAGAATCAGTCATGGTCTACGAACTCTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGGGATGATCCGGCCGAAGATAGTCGGTTCCTCTAGCTGATGTCGACCCCCCAGGGGGTTCGGGGGGATTGAGGGTCGACGGAAATGATGAAGTGTATACCGCTGGTAGAAGTGATATGGTGAGCAAAATCGCCATG # Right flank : GGGACGGGCGAGTCGCCGCTGACGGTGACGTCGACGCCGTACTTGATTCGATTGTCGGCCTTCCCACAGGGCCACAAGAGAACGAGGAAATTGCGACGGAGCTTGTACCGTGGCTGTTGGCCGTCCTCTCAACTACTGGTTGAGAACCGTTCCCGAAGCGCAGCTTCCCGAGTCTCGAACTGCGCGACCTTCGCACCGAGGTCGCGCTCAACGCGTTCGATGTGGGCGAGCGCGGCGTGGCCGTCGAGGCCGGTTTGCCCATCGTCAGCCGTCTCTGCACGCACCTGCTGGCGGTACGTTTGGGTGAGTCGGTCGAGGGTGCCCGCGGGGTTGAAGAGGATGTCGTTGGCGACCCGGACGTACCGGTCGAGTGCCGCGCCCTCCTTACCGGTGTAGAAGTGGGTGAGAGCGTGGGTGGCGCCGGAGTGGAGCGTCCACATGTCGAGCTCGAAGGGGTCGTCGGCTTCGGCCCGGGCGTCACTGGCGGCGCGCTCTGCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 14980-13547 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOO01000002.1 Halarchaeum rubridurum strain JCM 16108 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 14979 37 100.0 37 ..................................... AGCGGAGAGCCGACGAGGCCGCGCTTAACGACGGTGG 14905 37 100.0 38 ..................................... AGAATCAAGTGACGACGCCGCTCTCGTGGAACGACGCG 14830 37 100.0 35 ..................................... TATCCGATGATCGACTTTGTCGAACTCAACTCCGT 14758 37 100.0 35 ..................................... GGTGATGAGCGCGTGCTGTGTCGGTGTGATGCGGA 14686 37 100.0 39 ..................................... TGATCGTGTCGATCCTCTCCGTCCTCGGGATCGCGCGCT 14610 37 100.0 36 ..................................... GGAGACGCGAGAGACCGAGTTAACGACAACTGCATC 14537 37 100.0 38 ..................................... CTCTGGGGGATCATCCCGGTCATCGTCGTGCTGGCCGT 14462 37 100.0 37 ..................................... ACAGCGTGTCGCACTCGGGGACGCTCGCGGACGGCGC 14388 37 100.0 34 ..................................... ATGGTGTGGGATTTCCCGAGGCTCGTGGGGGCGT 14317 37 100.0 35 ..................................... ATGTTGATCGAGTTCCAGAACGACGACGGGGAGTT 14245 37 100.0 45 ..................................... TCACAGTGTCGTCTGACGTTGACAGCGCAACCTCAAGCCAGAGCA 14163 37 100.0 33 ..................................... TGGTACGCCGTCGGCACCGTCTTCCCGTGCCGG 14093 37 100.0 36 ..................................... GACGCTCACGGCCCCCGTGCTGACGAGGACGGCGGC 14020 37 100.0 38 ..................................... GAGTTGCAGCCCGGCCTCAACGCGACTGTGACGGCCGT 13945 37 100.0 34 ..................................... AGTGGCGCGGCGACGAGTCGAGAACTGCCGGACA 13874 37 100.0 36 ..................................... GACTGTCACGTCAGTCCCGACAATATCCAGTGCAAA 13801 37 100.0 36 ..................................... ATCCGCACCGTCGTCCGGGAGTCCGTCTGGAGCGGG 13728 37 100.0 35 ..................................... AATCAGCAGGTTAACGAATCGATTAACGAGCGCGT 13656 37 100.0 36 ..................................... GAGACGGGCCAGGAGTCGATGAGCGGGATGCACGAG 13583 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 20 37 100.0 37 GTCGCAGCGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : TCCGACGAGCGCTACCAGCTCGTCTTCGAGGGCGAGCGCGGCTTCGTCGTCGTCCAGCCCTACGAGGAGCTCGGCCCGCAGGCCTGAACCGGAGCCACTACTCGGTCTCGACCTCCTCCTCGCAGACGACGTCCGCGACGACGCGACGCTCGCCGTCCGCGTCGTAGCAGTACGTCTCGTCGGCCACTTCGTCCTCGGTCGCCCGATGCGAGCCGTCGCAGAAGGGGTGGTCGTCCGAGAGCCCGCATCGACAGACCGCGACATCGCCCTTCTCCGGGTCGATGTCGTCGGCGTCGAGTTTCACGGGGCCGTGCGCGTCGCGTTCGACGAGGCGGGACATACGGAAACAAAGACGACGGGCGCACAAGACGCCGGCGACACTCGGGGCACGCTTCGTCGACCTTTTTCAAAGCCGTGTACGGTGGGGGTCCACGAATCGACGCCGCGCTATCGCGGGTGGAGCAAGCTTTATGCAGCCTATCGGTGAATATTCATCCCCT # Right flank : TGTTCTTGCTCGGCGCGGGCGTCGGCTACGTCTTGAATCTCCGGAGAGTGTGTATTCGGGTGGCGAATCGAAGTGCCAGTTGACGCCGACGCGTTCGCCGCGACGCAACCCCGTCCGTCGCGGACGGCAAAGCCGCGGCCCGCCGGACCCGACCGGGTGAAGCGTTGGCGTCGAGACCGGATGCACTTTAGCCCGCATGCCCGGACTGGTCGGTCGCGAGCGACGCGAACGGTGAACACCGTGAACCGACGAGGCCACCTCGGTTGTCCCTCGACTGCGGAAGCAACACAGAGGCGTGCAGCAGCGGTCCTCGTCAGTAACGCGAACGAGGGGCAGCGAGACAACGTGTTTCGGACGGGTGCCGAACGAATATGCATCTCCGAGCGGAAGGGTCGGCCAGTGCGTTCCGAGTATCAGGACCTCCTTCTCTTCGGCGCGTACAGCGTGTGTGGTGCGCTCGTCTTCGTCGGCGCGAAACTGGGGATGCCGGACGTGCCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 2 457411-454018 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOO01000002.1 Halarchaeum rubridurum strain JCM 16108 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 457410 37 100.0 36 ..................................... TCCATCACTCCCCGTCCTCCGTCTCGGGCGCGTCGA 457337 37 100.0 35 ..................................... GCGCTCGACGCGTGGCTGAAGTGCCACGAGGCCCC 457265 37 100.0 37 ..................................... ACGTCGAGGCCGGCGAGTTCCTGGAGGGCGTTTGAGG 457191 37 100.0 34 ..................................... GCGAGCCGCTGCGACCACTCGGGGACGTCGTCGT 457120 37 100.0 35 ..................................... CATCGAGCGGCGGCGCGACGGCGGCCGTCGCGCTC 457048 37 100.0 34 ..................................... GCAGCCTCGCGAGCGCGGGCGCGCGAGCGCCTCG 456977 37 100.0 35 ..................................... TCGTCTGAGCGAGATTCTCCTTTGCGAGCTGGGCC 456905 37 100.0 35 ..................................... ACGTCATGCCGACCGCCCCTCGTAGAACGCGCTCG 456833 37 100.0 39 ..................................... AGGTCGGGCGTGCTCACCGCGCGTCACCCCGTTCGGTTT 456757 37 100.0 36 ..................................... TTCAGAACTCGCCCGGTTAGCAGACTCTCGACGAGG 456684 37 100.0 36 ..................................... ACCCCGGCGTCGCGGACGACCCCAACTCTTCGTCGG 456611 37 100.0 36 ..................................... GCGGACTACTCATCATCGCTCACCTCCTTGTTTCCG 456538 37 100.0 35 ..................................... TTATCACAACAACCGGCCAGACTGTGGTTCGGGAT 456466 37 100.0 33 ..................................... AGTAGTAGGTTGCTGTTTCACTTCCGGCGTCCG 456396 37 100.0 38 ..................................... ACGTGCAGTACGCGATGGATGGGCGGGGGAGTCGCCGC 456321 37 100.0 37 ..................................... GTCTGGAACCCACGCGGATGCGTCTCCATACTGATCG 456247 37 100.0 35 ..................................... GCTCCTCGACGCTCTCTTTCGGACGGTCGGCGGTG 456175 37 100.0 34 ..................................... TCGGACACGAATCTCACCCTCTCAATTCCGCATC 456104 37 100.0 36 ..................................... ACATCGGCGAGCGTCAGATCGGTCAGGACGCGGGCT 456031 37 100.0 34 ..................................... AGCACGCAACCGTCTGGGCCGTCACGCGCAACGA 455960 37 100.0 44 ..................................... GGTCACACTCCTCAGCAAGCACATCGCGGACACAACCGCGCTGT 455879 37 100.0 36 ..................................... AGGAGTAGGGTTCTATGCGGTGTAGGTCGCGGTCGC 455806 37 100.0 38 ..................................... GAAGAACAGGCAGCCCAGAAGCGCCGCAACGAGATTAT 455731 37 100.0 35 ..................................... GTGTGGGCGGCCTCGTCGACGTGGGCGAGCAGCTG 455659 37 100.0 37 ..................................... ATCGGCCCGCGTCGGTCAGCCAATAAACCTTGGCGGA 455585 37 100.0 37 ..................................... ATCGGCCCGCGTCGGTCAGCCAATAAACCTTGGCGGA 455511 37 100.0 37 ..................................... ACGAGTACGAGGAAGTCGGGTCGGTGACGGTGCGTGG 455437 37 100.0 34 ..................................... GCCCTCCACCTATCCCTCCTGGTGGCGTCGACAC 455366 37 100.0 39 ..................................... TGCCGACCGTGACGGCCATGCGACCGTCGTGCGTCGACG 455290 37 100.0 37 ..................................... AGATCGACAACCTCGACGCCAAGAACGCGTACGACTG 455216 37 100.0 37 ..................................... TTATGGAGGACGCCGGTGTAGCGGTCGGTCTCGTCGA 455142 37 100.0 37 ..................................... AACTGCCAGACGGTCGCGCTCGCGCAGTCTCCGACGG 455068 37 100.0 36 ..................................... ACTGGTAATCACTCGGTTCGCTGTCCATACTGCGGG 454995 37 100.0 36 ..................................... CTCCTCACCGACGGCGAACGAGCCGCAGTACGGGAC 454922 37 100.0 36 ..................................... TCGTCCTTCGGGACCGGCACCGTCACGGACTCCAAC 454849 37 100.0 37 ..................................... CTACTGGAGCGCGATGCAGACGAGAATCGGCTGAACG 454775 37 100.0 35 ..................................... CTGGCTGCGCGTCCGCGCCACCGATGTAGACGCGA 454703 37 100.0 39 ..................................... ACCGCACTATGACGGCGCGAAACGGACGGTCATGTGCGT 454627 37 100.0 34 ..................................... ACGATGGCTGAGAGCCGTCGCGCGTTCTCGGACG 454556 37 100.0 35 ..................................... TCCCGGACACGGAGGTGCTCGACGATCTCTTCCGC 454484 37 100.0 34 ..................................... TCGTCGAGTGCGTCGGCCGTCCGCTCACGGCGCT 454413 37 100.0 36 ..................................... TCCCGGACAGCAACGTCAAAACCGACCTGCCGAGTG 454340 37 100.0 37 ..................................... GGAGGCTGGATAACTCAATTTCCGGCGCGTTCGCCTA 454266 37 100.0 36 ..................................... TTGATGGCGATCTCGATGTGGCGGCCGGGCTTCGCA 454193 37 100.0 34 ..................................... CGGGCTGCGCTCGAAAGAGTGGCTTGACGTGGAG 454122 37 100.0 31 ..................................... CCTCCCAGTTATCGACTACGTTGGCGGGTAT 454054 37 94.6 0 .............................GC...... | ========== ====== ====== ====== ===================================== ============================================ ================== 47 37 99.9 36 GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : CTAGAGGCGGCAGACGGGACTGTCGTACTCAACTTCGATGGAGGGCCGCGAGAAATCTTTCTGCCGTTGACCGTTGCTGCGATTGCTCGACCGACCGCCGTTGACCTGGCACTCCAGTTCAGAGATGTGGACGAGGAGATCGAAGAACTCACGATTCCGAATCTAATGAGTCGTCCATCGGATGCGACCCTTGAGACGCTCCGCTATCTCGTCTCTGCCGATGAAGAAATGACACTCCCCCAGCTCTCCAAGGAGGCTGACAAATCCCGGAGCACTGTCGGCCGACATCTCGATGCACTTGAGGCCGATGGCACCGTCGAGACATGGATGGAAGGGAAAACGCGCCACGTCGCTCCAACGCTCGCCGGTCAACTTCGCGTATGATCGCCGTCTTCGTGGACCCTTTTCAAAGCCGTGGACAGGTGGGGTCCACGAATCGACTCCCCTCTCACGCGTCTTCAGAGAAAGATATAGGTACTATCCCCGAAAAAATACCCCCT # Right flank : AAACGCTACGGGACGCCTGGTCGATGACCGAGACGATGGTGTGTTCGTGGGAGAGCGAGCGCTCAGCGGCCTCGGTCGCCATTGGTGGCGCCGGCGGCACGAGTGCTCGTCGCCGTCGCGTTCGCGTCGGCCGGTCGTCCGCCGCGGGTCGTCGTGGTGTTCTCGTCGGTCGACGGCGCAGTATCCGCCGTCGCGTTCGAGTCGGCCGTCCGCTCGTCGCTCGGCGTCGTCGTACGCTCACCGGACGCCCGTTCGTCGTTCGGCGTCGCGTTCGTGCCGAACGCATTCCCGTCGCTCCCCGTCGCCGCCGTATCCTCGCCGGGCGTTCGTTCGCCATCTACCACTGCCGTCGCGTTCGCGCCGGACGCATCACCGGCGCTCGGCGTCGCGTTCTCGACCCGGTCGCTCGCGGGCGTCGCCGGTCGGTCGCCGCCGGCCGTGGCGGGCCCGCCACCGACCGGCGTCGCGGTGCGGTTGCCGTCGGAACCGGGGTGTCGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 3 468419-471310 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOO01000002.1 Halarchaeum rubridurum strain JCM 16108 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 468419 37 100.0 37 ..................................... AACGCTTCGAAGGACTCGGGGAGGGGGTGGCCGCCAT 468493 37 100.0 36 ..................................... AGGTCTATCTTCGCGTAGTCTCCCTGCGTCGTCTTC 468566 37 100.0 35 ..................................... GACTACGAGCGCGGCGTCCCAATTGAGGACGTCGT 468638 37 100.0 34 ..................................... AACTCGACGGTCGCGAGGTCGTCCGTCGAGACGC 468709 37 100.0 36 ..................................... ACGTCGTCGTCAACGAGACCGTCACGCTCGACAACG 468782 37 100.0 36 ..................................... GCCGCGACGATCGCGTGCTGCTCGCGGCGGCGCTCG 468855 37 100.0 48 ..................................... TCTGACGCTCTATCACCGGTATTGTTAAGTTGATAACCTGCGACGGTG 468940 37 100.0 36 ..................................... GCCGCAACAGCGATGTCGACGATGTCGGTGAGGTTT 469013 37 100.0 34 ..................................... GCACCGAGTGGCGGCTCATCTGCCTCGATTGCGA 469084 37 100.0 35 ..................................... AGCGCGTCGACCGTATCGTCGTGGAAGCCCTCCGG 469156 37 100.0 44 ..................................... AGGGACTGCATCTTGTCGGGTGGTTCGCGGAGCCCCTGAGCTTC 469237 37 100.0 36 ..................................... CGACGGTGGTACTGTACGGGTTTGACGCGCCTATCG 469310 37 100.0 35 ..................................... AAGAGCATGCGCTTGATGGAGTCGTCAAGTGGCGC 469382 37 100.0 35 ..................................... AGCATCCTCCAACTCTACTTCGACGATAATCGCGA 469454 37 100.0 36 ..................................... AGCATGGATTAAGTATGCGCGCGAGGAGGTGAATCC 469527 37 100.0 37 ..................................... AGTTTACGGTCTCCGAGATGCGGAACGCGAACGGCGA 469601 37 100.0 40 ..................................... GATTCAGCCCCGTCGAGTGGGACATCGCCGAGACCCTCAC 469678 37 100.0 35 ..................................... GAACCAATCCGCGACGAGGCTGGTGTGCATGGCGA 469750 37 100.0 35 ..................................... TCGGTTGCGTGGTACATCTCTCGTGCCATACTACA 469822 37 100.0 35 ..................................... AGGACAAGGAGGACCGGCAGGATGCCCCAGAGGGC 469894 37 100.0 37 ..................................... CTGACGTACATCGACAAGGCCGATAGCCTCGGCGGGT 469968 37 100.0 36 ..................................... ACGCCGAGACTTCGGTCACGCGATCCGTCGCAAGTG 470041 37 100.0 35 ..................................... ACGACGACGAGAGTGAGACCGAACCGGATGGTGGC 470113 37 100.0 35 ..................................... CTTGATGGATTCGAGGGGTCAATCAACATCCTGAT 470185 37 100.0 37 ..................................... ACCGAAGCCGATGCCCGTACTCAATCCCGCTCGGGCC 470259 37 100.0 38 ..................................... ACGTAGATGCGGCGTGGCAACTCGGTGCGCGTGGTGGT 470334 37 100.0 37 ..................................... AAAGAGCACGCGGATGCCGACCCGGAACTGGCGGTTG 470408 37 100.0 36 ..................................... TCACGGTCACGGTGTTCGCCGCGTAGTCGACCGAGT 470481 37 100.0 35 ..................................... AAGACAAGCGAATGCGAGACGAGTTCTTCGCTATA 470553 37 100.0 39 ..................................... GATGCCGTGACACGGCTTTCCGTCGTCGACGTGTGCGGT 470629 37 100.0 34 ..................................... GCGACGGAGAAGGAAGCAGAGCGCGAAGAAGAAC 470700 37 100.0 34 ..................................... TCCGTCACGTCAATAGTGTCCACAGGCACGCTGG 470771 37 100.0 35 ..................................... GTCGAACTCGGGGAACGGCGTCGCGTGCGCAATTG 470843 37 100.0 36 ..................................... ATCAGCAGGACGGCGGGGAGGAGCCACCACGGGATC 470916 37 100.0 32 ..................................... CCGGCGAATAGGTCGAGGCAGACCCGAGTCAT 470985 37 100.0 37 ..................................... CGAATGAGTCGGCGCTCCATCGAGATCGGGACGTCCG 471059 37 100.0 36 ..................................... TCGTCGCTCCATCCCCGCTCGGGCTGGCGGCCGAGG 471132 37 100.0 32 ..................................... GCGTACCACGAGTCCTCGAAGTCTCGTGGCGG 471201 37 100.0 36 ..................................... CGTCAGCAGTCAACCAGACGCGACGACCATCGTCAG 471274 37 94.6 0 ..............................G.A.... | ========== ====== ====== ====== ===================================== ================================================ ================== 40 37 99.9 36 GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : CGCACTTCGACTATCGCGTGAGCCGTCGAAAGGCGATCCGACAGCAAGTGATCCTCCTGCGGAAAGCGATCACGGGCGAGCTCGACGACTACCACGCACTGGAGGTGTCGAGATGAGGTTGGCGGTGACGTACGACGTCAGCGACGACGCGAATCGGCGGCGCGTCTATCGGACGCTCGAACGATACGGGGCGTGGCGACAGTACAGCGTCTTCGAACTCGACGTCTCGAAGAGCCAGCGGGTCGAACTCGAAGACGAACTCGAGAGTCACATCGAGCCAGCCGATGGCGACCGTATTCGATTGTATCGACTCTGTGAAGCCTGTCAGAAGGCGACGACCGACCTCGGAACGGAGCCGCCGGGGGAGCAGTCGAACGTCATCTGACACCCCCTTCGTGGACCTTTTTCAAAGCCGTGTACAGCGGGGGTCCACGAACGGTCGCCACTCTCTCCTGCCGCCAGAGAAAACTATAGGTGCCATCCCCGAGAAAACACCCCCT # Right flank : CACGACGCGGCAGCTGTTTCAATCAGTAGATATCGACAGTAACGACCGATTTCGCCGAGAGGGAGGTCTCGACGCGATAGTGGCGGCTGTCAAGGGCGAGGGGACGGTCGCCGGCGGATCACTGTCACGTGTAGTCGCGTCGGACCGGAGTATGGCCGGGACGGACTCAATGGCGGAGTCGAAGAACACGACAGCGCAATCGGCCATGAGGGGCGATGCTGGGCAGCCCACACGACTGCGGGACGGCGTCACGCGCCTCGGAGTGCAGAGACGCGACGACGAGTGTAGCTAACTGTCGACCGTCTCGGGATCGAACCACCATCGGTCGAGGCGAGGGAACGCTTCAAGAACCGGAGGCTCGGCGACGAACGCGTCGTGATACCGGTGATGACCGCTCCCACGATGGCTTCACGTCTCACTCACCGACTGGCGGACCGATAGTGGTTGCTCGCGTGGTAGCGGGTTCTCTCCGTGCCGAGCCACGGCATACTTGACGGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //