Array 1 16310-19901 **** Predicted by CRISPRDetect 2.4 *** >NC_005230.1 Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 16310 37 100.0 35 ..................................... GATTGTTGTGCCCCTGGCGGTCGCTTTCAATGCCT 16382 37 100.0 37 ..................................... TAATCCTAATTAGGTTTGAGTTAGTATCTAGTGCCAT 16456 37 100.0 33 ..................................... ACAGATTTTGCTTCAGCTAGTACCAAAGGCTAG 16526 37 100.0 37 ..................................... TCGTAACTACCTTCTAAGTCTGTAGCGATGAATGTGG 16600 37 100.0 37 ..................................... CAAAATATAGGGAAGAATTTTAGAAAGAACCTCAGAA 16674 37 100.0 39 ..................................... AACTAAGGCATCCCATAGCATTCCGCTACGATCTATCAG 16750 37 100.0 35 ..................................... TAATAATTGCTGATTAATCGTGGTGGTGGTGGTGG 16822 37 100.0 36 ..................................... GATATATGGCTAAATATTGCTCAAAAGATTTTAATA 16895 37 100.0 35 ..................................... ATTAGATTGGTCGTGTTTTGATTAACGGTGCTAGC 16967 37 100.0 35 ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 17039 37 100.0 35 ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 17111 37 100.0 36 ..................................... TTGCGGACAGACTCGATTAAGTCAATAACAGCTTGG 17184 37 100.0 36 ..................................... CTTGCCCTAATTTTCCTGGTGGAAAAGCCGCTGGCT 17257 37 100.0 35 ..................................... ATAGCAAGTTGCTAGAGAAAGCGCAACAAAACAAG 17329 37 100.0 34 ..................................... GAGGTTAAATTGTTGTCGATTCAAGAAGACTTGA 17400 37 100.0 36 ..................................... AATAGACACGAATTCCGGTTCCAGACCCAGCCCGTT 17473 37 100.0 35 ..................................... TTCTTCCATCAGTCCAAGTTCTTCAACAATGTCTA 17545 37 100.0 35 ..................................... TGCTGAAGAAGCTGGAGAGAATCGGGCATCGCTAT 17617 37 100.0 35 ..................................... ATTCCAGATGTGGTGGAAGAAACCTACGCCCCCGA 17689 37 100.0 32 ..................................... AATCAGCTTCCGGCGTTGCCATTTGGATTCAA 17758 37 100.0 34 ..................................... GTGAGGGGGCCAGATCCCTGCCAGATCCCCCAAT 17829 37 100.0 35 ..................................... ATTAGATCTTTGGCATAAGGCAACCGAAACTGATC 17901 37 100.0 35 ..................................... GATTATCGTGCTTCCTTCGATGCTAACTTTGCTCT 17973 37 100.0 35 ..................................... TCCATAATGATTCTGCCTCGTTTCTACTTGGTTTA 18045 37 100.0 37 ..................................... TGTATGTCACGCCATCGGACAGGTAGGGAAAGCCTGG 18119 37 100.0 38 ..................................... CAACTGGCTAAGCTGGTCATAAGGCTTTGGGAATGAAA 18194 37 100.0 34 ..................................... TCGGGTTTCCCTCCTGGGTAATGACGCCTACGGG 18265 37 100.0 34 ..................................... CAAAGCTGGCACGGAAGCCCTTAAGGATATCCTC 18336 37 100.0 37 ..................................... GATGCAGAGATTCCACCACCAAAGGAGAATCCGATAA 18410 37 100.0 37 ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 18484 37 100.0 41 ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 18562 37 100.0 37 ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 18636 37 100.0 41 ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 18714 37 100.0 35 ..................................... AAGTAAGGTTCAAACGCCGCTACGCAGTCTGGTCC 18786 37 100.0 33 ..................................... CAAAGTTGGAACGAAAGCTAACGACAAAAACTA 18856 37 100.0 38 ..................................... TTTAGCCATCGTCGGATTCTAATCGATCCAAAAGTCGG 18931 37 100.0 37 ..................................... AATCCTACCAAGCGGCTTTTGGTGGGCCTGGCTCCGA 19005 37 100.0 36 ..................................... TTCGGTTGATTGATGAAGATCTGATCGTCGAGTGGT 19078 37 100.0 34 ..................................... TCCCTTTTCGGGGATAGGTGGTGTCCCTTTTCGG 19149 37 100.0 35 ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 19221 37 100.0 35 ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 19293 37 100.0 36 ..................................... GGGCAATGTTAAGCATGGCTAGAAGGAATAGTTAAC 19366 37 100.0 33 ..................................... TTCCATTAATGATTCTTCAAAAATCACTCGATT 19436 37 100.0 36 ..................................... ACTGTTACTAGCCACCGCCCAACTCCTTTAATACTT 19509 37 100.0 37 ..................................... TCTTCTGTTACGTAGATTTTTCCTGTTTCGCCAACAG 19583 37 100.0 37 ..................................... CATCGCTCCCAGCATATTGTCCTGAACGGTCGGCAAT 19657 37 100.0 34 ..................................... GATTTTTCCAGTGATGGTGCATACCTAGCCGTAG 19728 37 100.0 32 ..................................... TAGTCCCTCCCACACTGCCAATATTTCTTCAT 19797 37 100.0 31 ..................................... TCCGTCTGTATGACTTATACTCGCAAGGATT 19865 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 50 37 100.0 36 CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Left flank : AAAATGCTTTATTTGATTATTTATGATGTCCCGGCTACAAAGGCGGGTAATAAACGACGAACTCGTTTGTTTGATCTCTTATCGGGCTATGGCAAATGGCGACAGTTCAGTGTGTTTGAGTGTTTTTTGTCAGTCAAGCAGTTTGCTAAGTTACAAACGGCGATGGAGAAGTTGATTAAACTTGATGAGGATGCAGTTTGTATTTATGTGTTGGATGAAAATACGGTGCAACGCACGATTACCTACGGGACTCCCCAACCAGAAAAACCTGGTAGTATTATTATCTAAGAAGTCATTCTTCAAATTTTGGCATACCTATAGCGAGGGCCTTTTCCCTGGGGGGGTTGCCAAATTGCTTCTGAACCTTGAAAAATCAATACTTTCACGCATTCAGACTGCGTACTATTTTGAAGGTCTGGCTGATTTTGGAAAGATATTCTGGAAGGTTTGCCAAAGTCTGCTTTCCTCCACTTTCCCCGTAAGGGGTCGGAGGGGGCGGT # Right flank : CACGCCGCCAGCCCACCAGCGCCAGTTAACATCATCTCCAAGTCTAAACTGAACCCCACCAGTAGCGCTAAAAACAGCTATTTGAGAATCAGCCATGATTGTTTTCCCCGGTTGCAGTTTTTAGTTTAGAGCTTTCTCCCCTGTCCACTTTTTCGGGGCCACCTTACAGCCCTGGTAATAGGATTTGCTTCTCACTGCCATCACTATTGATGGGACACTCCACTCACGTAGTTACAGAAACCTCCCTTGTTAGGAGACCACTGCCATATATTTTGCTTTTTATCAAACGAAATTACTGCTTATATTTTTTGACTCTAAAACAGCAGTCACTGGCACAATTAGATTAGGTTTATTGTTATATTCCTATGCCTAAACTTAAAAAGCTTACTCCCAAGGCCGAAGCCCAATCTGAGTCCACCAGTCTAGACCGTCTAAGGGAACTGGCCCAAGACCCCAAACTGGCCAAGCTAGTAGCGGCTAATTATATGGCCCCACCGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-D [Matched known repeat from this family], // Array 2 68499-72778 **** Predicted by CRISPRDetect 2.4 *** >NC_005230.1 Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 68499 37 100.0 36 ..................................... TGTAGTAGAACCAATCGGGGTCGTCAATAACTCCCG 68572 37 100.0 40 ..................................... CGGGGCTTGGGGGGTTGGAGTCCCCGCCCCCGTGGTGGGA 68649 37 100.0 42 ..................................... TGTGAGTTGCATAATGCCTCCTAATGGCTGTTGGACTCATAA 68728 37 100.0 36 ..................................... CTTGGTATTTGTAGTTCTCGATGAGTGTTTTAGGCA 68801 37 100.0 36 ..................................... TGATAACGGGATGCCAGCCCTAAAGGTGATGAGCGG 68874 37 100.0 39 ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 68950 37 100.0 39 ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 69026 37 100.0 39 ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 69102 37 100.0 39 ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 69178 37 100.0 35 ..................................... CTATTAAGGCTATTTTCGCCACTTCTGTTTGAAAG 69250 37 100.0 44 ..................................... GTCACACCTCTTCACGAATCCTCACATCATGAATAAGCTGCACA 69331 37 100.0 39 ..................................... CGCGGGTCGAGATGTCGCTGGACACGCTGGTGCCGGACA 69407 37 100.0 38 ..................................... CTGGGCGGACTGGAGTTGCCACCTGCCGATGGCCTGCA 69482 37 100.0 41 ..................................... GAGCCAAAGTCAACTAGCACAGGCACGGCAAGCCATCCTGA 69560 37 100.0 38 ..................................... TCGTGCATCTGCGCATAGGAAGAGGTTAATTCCTCAAC 69635 37 100.0 38 ..................................... AACGGGCAGCCCGAGTGGTGGGCATCGAGGTGGTGCTC 69710 37 100.0 40 ..................................... CCCCGCCACATTTTCGGATTAGAGGATTTGAATCGGCCGT 69787 37 100.0 42 ..................................... AGTTTCTCAAACTTTTCGGCGATCGCCGTCCAGGTGAGTTGA 69866 37 100.0 43 ..................................... TAGCGAAAAGTTATAGTTACCTTTGACCGGAGCTACCAACTCA 69946 37 100.0 35 ..................................... CCCCGCTGCCACGAGGGCAGCTGTAGACGCACCCC 70018 37 100.0 40 ..................................... TTAAATATACCCATCCCTAATAAAGGATAGAGATCTTGCA 70095 37 100.0 37 ..................................... GCTCTATTCTAATAACCCAAGCTTTTTTCAATTCTAA 70169 37 100.0 41 ..................................... CCGCTTGGTAGGATTGACCACCAAAGCTAGAAACAGGCACA 70247 37 100.0 35 ..................................... AGGGCGGTTAATCACTAGCGGCGATCTAGATATTG 70319 37 100.0 45 ..................................... TAGACTTCTATTTCCCCTCTTGCCGAGGGATGATACTGCAATTGA 70401 37 100.0 38 ..................................... TGCGCTCTCTTATCAAACGCCGCAACGCCATCAAGGCT 70476 37 100.0 39 ..................................... ACGAGCGGAATCTTCTATGGATCGGATCACATCCTTAAT 70552 37 100.0 37 ..................................... CTGGTGTCGGGGTTGTAGTATTCGTCTCGGTACAACA 70626 37 100.0 40 ..................................... ACTATAGGGAGCGTTACCCTAGCTAGACATTGCCTAATCT 70703 37 100.0 40 ..................................... AAGAAGCAGAATAATGCGATTGAGTGGACAAAAATAAGAA 70780 37 100.0 34 ..................................... GGTTACGTATCGGCGTAACCGCCACTCCTTAGAG 70851 37 100.0 39 ..................................... CGCCTCCTGCGCCCTGGAGGGGTGATCCTACACCTCGCG 70927 37 100.0 36 ..................................... GATTCTGGTATACGTTTATCCCACCACTCCTTAGCT 71000 37 100.0 35 ..................................... CTCGTAAGCTAGGCAACGGCCTTGCTCGATGCACA 71072 37 100.0 36 ..................................... GGTGCAGCTGCGCCTAAGGAGATGGCTGTACAAGCT 71145 37 100.0 39 ..................................... CACCTAGAGGGTACCTCCCGGTTAGACCGGGGCTCTTAT 71221 37 100.0 36 ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 71294 37 100.0 40 ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 71371 37 100.0 36 ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 71444 37 100.0 40 ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 71521 37 100.0 40 ..................................... CTAGCCTTTGTGGCTAACCCTCCTGCGCTTTGACATATAG 71598 37 100.0 35 ..................................... TTTTACCTCTTGCTCCTGCACAAGCTCAGCCTTAA 71670 37 100.0 36 ..................................... TCCTCCTCGCCTCTGAGAAAGAGTATGAAACACTGT 71743 37 100.0 37 ..................................... ATGAACAGATTGCCATCTTCTAGGCGGATAGCCTGGG 71817 37 100.0 40 ..................................... CGCCCATTGTTTGTGCTTCCGGAAGAAGTCTTTCAACTTC 71894 37 100.0 43 ..................................... GTTATCACGAGTTATCTTGCGCAAATCTTGTAGTGCATCTTTT 71974 37 100.0 37 ..................................... TTTAGCGGAGGAGACCTCTTCTATTTCTCCTATAACC 72048 37 100.0 41 ..................................... GGGAGAACCCTAAAAAGTTCTCCTGTCTAATCGCCACCTGT 72126 37 100.0 35 ..................................... CGCTCCAGAGTGCGCCGCCGCCGAATTGCGGTCCA 72198 37 100.0 45 ..................................... GAGACTCTATCTTTGGAGTTTCTAAGACATTGGCGGTTTCTAGGG 72280 37 100.0 41 ..................................... ATTGCTTGGCGTAGGTTGACTTACCCGAGCCTGGGAGACCA 72358 37 100.0 40 ..................................... TCCAAGGGCTCTTCGTCTTCAAAGGCCTTAGTTACCTCTG 72435 37 100.0 45 ..................................... ATAATAAAGCACCCTCAACGGACTATGCCATGAACAACAGGACCC 72517 37 100.0 34 ..................................... GTTGCCAGTTTTGCCGTTTTTGCTGTTCTGAGAT 72588 37 100.0 46 ..................................... CCCATAATAATTAGGCTCGCTACCATAAGGGGAAACTTCTTCCAAG 72671 37 100.0 34 ..................................... GCGCCTGAGGTGGTCAATAGTGACCCCATGGCTC 72742 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ============================================== ================== 57 37 100.0 39 GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Left flank : CCCAGTGGGGGAACGGTGCTGACACACCCAACCCGCGACTGGGTTTATTTATGTTAGTTTACCCTTTCTATGGGTTCAAAATGTGTCTATCCCGACAAAATTAGGGCTATTACAACAACTCGTTGACACTGGCCATAAGTCTCAAACCCTTGTCGTGTCAGCGTTTGCTCGAAGTAAAAAATAAAACTCGTGGACACTACCATAGACAATATTTGCTTCTGTAATTGCTTCCCAAATCAGATCAAGTTTTGTTAAGCACTTGACGATTTTCAGCGGACGTTGTAGCAGTGAGCCTGACTTTGTCTGACGGAGCTTATGTAAAGTTTTATGGATTAATGCTTGCTTTCAGCAAATTTAGGTATTACTATGACCTTTATAGCCAAAAATAAGGCTTTTTATTGTTATGTTTTCAGTACGTAACAAATCGTTAAACGTCTACCTCTTGTTTGGCGGATTGGCACCTCGAAAACCGCATACAGACTGTTTTTCAGTGTGATAGG # Right flank : CGATCAGCAAAAGTATCTCAATTGCTGACAGTGTCATAAACCTGAACAAGAGTCATTCCACGTCCAGAAATATTAAGCATTTCGTTGTTCAATTTTTTTACTACTTGCCGTAAGCCCAACCATTGATAATATCAATCAACTCATTGGACCAAGGGTTAGGATTGCGGTCTTGATAAATTTGCCAAAGAGACTGATAGTACCAAATAATGCCAGATTTGCTCCGACTGAACTTTTGCCAAATATCATTCCCATAGCGGTGTAGGTCGATCTCAATAGTGCGGGCATTATGGAGAGTATCCGCCAAAGAAATTTTCAGCACAGCGAGGGAAATGCGAGACATTTTTTGTAAATGCTGTTGTTTTCTCTCTTCCCAGGGCGGTTTCGGCACTGTGGAGCTATCGGAACACCCCAACACTAATTGAGCTACGGTTTCCCCAAACTTTTCCCGAATTACATTGAGAGTGGCTTCTCCCCCTTGGTCCTCCACCGCATCATGGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 3 90105-92958 **** Predicted by CRISPRDetect 2.4 *** >NC_005230.1 Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 90105 36 100.0 36 .................................... CTTTAGGTGGGCGTTGACCTTTAGATTAGGAATGGT 90177 36 100.0 36 .................................... AGCGCCACAGCTGACAGAGTTCCTGAAGGAAGCTAA 90249 36 100.0 35 .................................... CTGAGTGATTTTTATCAATTGTCGAGCTTAGTAGT 90320 36 100.0 36 .................................... ACAGGAGTGTTAGCGCACTGCCTGTCATTACTATTA 90392 36 100.0 39 .................................... TTAGATTGCGGGGGCTAGTGACGCCATAGTTTAACGACA 90467 36 100.0 36 .................................... AAAGATATTAGGCTATCCTTCGGGGTAGTCTTTCTT 90539 36 100.0 35 .................................... AAGTGTTGTTGCCTAGTGTTATACCAGAATATCCC 90610 36 100.0 37 .................................... CTCATTAGTGCTATCTTCTTGTTGATGGATTAGAACA 90683 36 100.0 37 .................................... TCTACTCTGGTGAAGACCAAGTGGATTTCGTGGTGAT 90756 36 100.0 36 .................................... GTTAGTGCTTGGTTGTGGTTATGCTGCAACTAAGCC 90828 36 100.0 37 .................................... ATCGATATACTTTTTAGCATCAGCTAAATGATAAAAA 90901 36 100.0 35 .................................... TTAGAAAGTTTTGGTTAGTTTCCATTCCTCTTTTT 90972 36 100.0 36 .................................... TTTCTCCATTGTTAGTTAGTCATTTCCTTGACAATT 91044 36 100.0 36 .................................... TGGGATTCATGAACATGTTGATGGTGAATTATACCT 91116 36 100.0 41 .................................... TGATTAAATTAATATGCGTGATAGATTAACTCATTTTGGTT 91193 36 100.0 35 .................................... TTTTTTGGCATAACTCAGTAAGTCTTTTTTGTTTA 91264 36 100.0 39 .................................... AATACTAATCTTAAAGATCTTGGTTTAATTACATATCGT 91339 36 100.0 37 .................................... AACAATTGCAAGGTTTATAAGTAAATGAACAACAACG 91412 36 100.0 38 .................................... AAATCCAACAACTTCTCCACATTTACTCCACTAGTCTC 91486 36 100.0 40 .................................... CTCCTACTTGTGCAGCCTCTAGTCCGCTTTTTAGATTGCG 91562 36 100.0 39 .................................... GCTTCGCTTCTTTCGCTTTCTCAACATAAAACTCATGAT 91637 36 100.0 35 .................................... CTAAAGTATGGTAACTCTGGGTAATTTTTTAACAG 91708 36 100.0 37 .................................... CTTATCTTTTTCTAGCGTAACAAAAGAATAATCAGGA 91781 36 100.0 40 .................................... TTTCAACCAAAAGCTTATTGGCTTCTACGGACTCACGAGC 91857 36 100.0 39 .................................... TCTGAACTACTTTTTTTTCAACGACTTCACCATGGGAAG 91932 36 100.0 39 .................................... AGTTTTAGATGCACCAATTACATCTTCTTCCATAAAGGA 92007 36 100.0 46 .................................... ATTCAAGACCTCCGGTGGTCAGAAGACTGTAGCAACAAAGCTTGAG 92089 36 100.0 39 .................................... TAGATCAGGCATCCAAACTCTTGGGCGATGTCGCGTAAC 92164 36 100.0 36 .................................... CGATGTAGCTCATAGCGACCTCGATAATTAATTGAT 92236 36 100.0 39 .................................... ACCAAGCTAGTCACTATCCGATCAACCGTCGTTGCAGGT 92311 36 100.0 42 .................................... TATCAAGAGTTGTCTAGTCAGTTCCAAGAAAAACCCTGGGAG 92389 36 100.0 41 .................................... TGACCTGATTCCTCGAGAATTGAGACTCCTAAAGAAATTGC 92466 36 100.0 35 .................................... AGTTCCAGTCGTGCTCCAAGGGCTCTTCGTCTTCA 92537 36 100.0 47 .................................... AACTTTGGAAAATTGCCTTCATACCATTCTTTTGTTAAACCGTTGTT 92620 36 97.2 37 ...........C........................ AGCAACAAAACAGCCAGCAGCAATTAATAAATCAGTT 92693 36 100.0 39 .................................... ACTCCGTGGCGTCGTACCGGTACGCCTGGGCTTCGTCCA 92768 36 100.0 43 .................................... TGAAATAACCCCCATAGCGGTGGCCATGGGGGCGTTTTACTAA 92847 36 100.0 40 .................................... ATATCTGTTAGCTCAATTTGAGCAAGTTCATCATTTTTTA 92923 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 39 36 99.9 38 GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Left flank : TTAATTCGCTAATTGATGTTTCTCTATGTTATTGCCTACGATATTCCTGATGATCGCCGTCGTAAAAAGATGGCCGATTTATTAGAAGGTTATGGCCAAAGGGTGCAATATTCTGTATTTGAATGTACATTGTCTAAGTCTAAGTTTAATGAATTGCAAAAACGTCTCCGCAAAATTTATCAATCAGAGGAAGATAGTTTGCGTTTTTATCCTTTGTCTGGGCATACCCTCACCCAGGTTGATATTTGGGGGGAACCACCACTCACTAAGCCCCCTGGCTCAGTCATTGTCTAAAATCTATGCTGATTATTGGTGTACCATTGCGAGGCTGATGGAAAATCGCTGTAATGTCCGTTTTTCGTTGGGAGCCTCGATGGCTTACTGTATAAGGATTTCAGCCGCTATTTTTGCGTTGAGCTTTTCCGATTATGGTCAATTTTTGCTGAGCCTCGCAAATGAGGATTGGATGCCTTGTCCCGTAAGGCTTTAAAATGGGGGCA # Right flank : CTAGCTACGATAACAATTAGTATTACAAAAATATGAATTGAATTAATAATTTAGCCTACGGGAAAATAGGTTTTCTACTGCCATGCTAAAAAATAGATGTTGAGTTAAGTCATCCACCATGCAACTAAAACACTGGCAATCTCAAAAACAGGAGCAAAAAAAGAGTCCAGGGGCTCCCAAAAAAGTGCGGCGACAAAAAGCCCGCCTGCAAGCCCTACGAAAAAAGCTCCATTCTTCCTGGGCTGGAAACCAGCCATAATAATTCGTTCACCAGAACTCGCAATTTTTCACGGAGAAGCCGACAAACATGAATAGTATTTTCACCATTAACCCCTATTGGACCGGAAGCACCTGGGCGTTTGATGCGGCCGAAGTGGGTCTATTAGGGGAACCCTTTGTTTCCGGAGCTGACGCCATTTTGAGCGCCATTGTCAAGCGGGAACTGGCATTGGAGACAGAACAAGGCAGTCAATTCGAGCTAATCTTCAGTGCCGAAGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //