Array 1 98754-97935 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEWY01000067.1 Haemophilus influenzae isolate PTHi-8273, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 98753 37 100.0 33 ..................................... ATTTAGTTCCTCAAAACCACCTAGGTCTTCTAG 98683 37 100.0 34 ..................................... ATCTGCACGTTATAGGCGTATCAAAGAACAAATT 98612 37 100.0 35 ..................................... CCAACCCGATTAACGTTGTTCGTGCAACTATTGAT 98540 37 100.0 36 ..................................... TTTGTACTGTTGGTTCAACTGAATCAAGAACAGTAA 98467 37 100.0 34 ..................................... ATTCAGAATGATAATTTGACCATCCGTTTGCTGC 98396 37 100.0 31 ..................................... TTAAATGCAGATTCACTGATACTTTCTGTAG 98328 37 100.0 34 ..................................... TTAATTTTAACGGTTTACTAGTTCTTGCAAGCGT 98257 37 100.0 35 ..................................... CTTACCATCTACGGGGTATCGTGCTTTATAAACTT 98185 37 100.0 34 ..................................... CTTAAATTTCTCTTTTAGTAACCGCACTACTTCC 98114 37 100.0 34 ..................................... AAAGCTCTTGTACTTCTTTTGTCAATTGTTCTAA 98043 37 100.0 35 ..................................... ACGGCAAAATAAGCCGTCATCCCCACATCACTACG 97971 37 97.3 0 ..................................A.. | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 99.8 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TAAATTCTAGGAAGAAAAAAATGGCACAATATTTAATTGGTTACGATATTTCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCCATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCTACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTTTGCTAAAATATACCGCACTTTTGGCTGAGTTTTGAAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGTA # Right flank : TCATGGTCTTCAGGAATGTCTTTGTTCACGATAGGTCGAAAGACATCGCCTGCCTAAAAGGGATGTACATCGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATCGACCGCACTTTTTATTTCCTTTCATTTTTACAAATCTGTATTTTCGCCTTTCTATTTATGACTTTTCTATAATTCACTCCGTTAGTAATTGATTTTTAGCTCAGAGGATTGAGCTCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGGCATATAAAACAATTGTTCTAATTTAAAAATGTGAGGGAATTAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAATTTGGGGAATGCACCAGAAATTCGAGCGATGCAAAATGGTGATACGGTTGCTAATTTTAGTGTGGCGACATCTGAAAGCTGGGTGGATAAAAATACACAGGAAAAACGTGAAAATACCGAATGGCATCGTATTGTGCTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 8044-7724 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEWY01000017.1 Haemophilus influenzae isolate PTHi-8273, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 8043 37 100.0 32 ..................................... TTAGGTAATTCTGAATTTAATAGAATGGTTGC 7974 37 100.0 36 ..................................... AACACGTTGAAGTGTTGGTTCAACACTGTCCAATGT 7901 37 100.0 33 ..................................... TACGCTGTCCAAAGTATGGACTGCAGCGGAGAA 7831 37 100.0 34 ..................................... TTAAAGGCTGAGGACAGAGCGTCCCCGAACTTGA 7760 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTAAAAT # Left flank : AAATGTGTAATTAATGTAGATGATAGGAGAAAAATTATGTGGTTACCTGTAGCAGAATTAATCGTCGCAGCTGTTGTAACAGAGGTGGTTGACCGACTCATGGAGGATTAGCGCCTCTCAGCTTGGCAAGTGCTGTGAACTTGCTACATCAATATTAGCCAACAAAACAAGAAGAATATGTTTGAACGCTTACTTGTTGTCGCGATTGCTACAGCCATCGCAAGAGCAGTAGAAAACGCATCCAAAGATTAAACTTTGGCGGCATGCGGTGCCGAAAACCGCTATTGTGTCATAATGTATTAACATTATAGAAATACTACTGGTGTATTAAAAAAACTCTGTTAAAATACGCCGCACTTTTGACTGAGTTTTGAAAAAATAAGAATGATAAAGGTTGTTCAATATTTAACCAAATCAATACCTAACTCTTCAGATATCAGAAAAAGTTGGAAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA # Right flank : TAAGTTTTTACTTCTATCTTAAAATTATTGCTGGCTTTGGCATTCCCAAAAATCTCCGCTAAAATAACCACACTTTTTCTTATCTTCTAGGAAAGCAATATGTCAGATATTCTCAATAACCTTATTCATCTTCTTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGCCAAGTATTTGGCGGTCAAGTAGTGGCACAGGCGTTATCTGCAGCAATGCAGGTGGCACCAGAAGATCGCATTTTACATTCTTGTCATGCCTATTTTCTTGCTCCAGGAGACAGCCAATATCCGATTATTTACGATATAGAAACCTTGCGTGAAGGGCGTAATTTTTCTACATTACGCGTAAAAGCCATTCAACATAAAAATACCATTTGTCATGTAACCGCTTCTTTCCAAGTGCCAGAAAAAGGTTTTGAACATCAAAATTCAATGCCAAATGTTGGCGCGCCTGAAGACTTTACAGATGAAAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //