Array 1 2320-889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQE01000038.1 Tepidimonas taiwanensis strain MB2 contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2319 28 100.0 33 ............................ CTCGCCAGCCGGGTCAAGCGCAGCGGCGCCCAC 2258 28 100.0 33 ............................ CGGTCATAGACGATCCCGCATATGGGAATCCCC 2197 28 100.0 33 ............................ CGATGGTCAGACGCTCGGGAACACCAGACGACC 2136 28 100.0 33 ............................ GGTGATGGCGTCCCCCATGCGCGCGAACTCGGC 2075 28 100.0 33 ............................ TCTAGGGGCGTATGATCCTTCTACTGGTAGCGT 2014 28 100.0 33 ............................ CGCGGCGTGGCCACAGCCGGGCGCCGACTGGCG 1953 28 100.0 33 ............................ CAGCTCCTTGCCCTGCTTCTTGATGATGAGCCC 1892 28 100.0 33 ............................ TTTGCAGGATAGTATCGGCAGACTTGCCGATGC 1831 28 100.0 33 ............................ CCCGTCCATCGTCGCCATCGAGCAGACGCAGTT 1770 28 100.0 33 ............................ CGTCAAAGTCGGTCAATGGGTAGAAATTGACGG 1709 28 100.0 33 ............................ CGCAGCACCGTCTCGCGCCACGCCGCCACTTCG 1648 28 100.0 33 ............................ CCTGCCGCAGTTGCGCGCACTGCGCGACCAGGT 1587 28 100.0 33 ............................ TGAGCAATGACCGCTACGAGAAAATCCGCCAGG 1526 28 100.0 33 ............................ TGCGACCGAGACCGAGCGCGCCATCTCGCGCGC 1465 28 100.0 33 ............................ CTCCTGATTACCTGGCGAATAGCTGCGCACGGT 1404 28 100.0 33 ............................ TTCGGAAAACCCGCGAGAGTAATGCCCGTTCAC 1343 28 100.0 33 ............................ TGCCCGCCGGACAGCGGCGCATCTGGCGTGCTT 1282 28 100.0 33 ............................ TGTCGAGTAAGACAGGGTCTAGAGTGTCCAGTT 1221 28 100.0 33 ............................ CGGGTTTTAGGTTCAATGCTTCGGGTTGTCGAC 1160 28 100.0 33 ............................ ACAGGCCGAGCTGCGGCCCCTTTGCCCCGTTGC 1099 28 100.0 33 ............................ TGCCCGGCCCGCTGCGCCTTGCCCGGTCGGTGC 1038 28 100.0 33 ............................ CGCGACTGGCGGCGTATCGCGGTCACAGAGGCG 977 28 92.9 33 ..............C........C.... GATGCGGTAGCTGCCGTGCCGCCGCCGGGCTTC 916 28 92.9 0 ..............C........C.... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.4 33 GGCTCCCCCGCGCATGCGGGGATTGACC # Left flank : GGCGTTTGGTGCCGTGCAAGCGATCCAACAGCGCAAGTCCGACCTGACCGTCGAGCGCGAAGTCCGGCGGCGAGCGGTGCAGGCCTTTCGGCGGGAAAAACTCATCCCCCGCATGATCGAACGTATCAAGGAGCTGTTCGATGTCGATGACCGTGGTGGTGACGCGTAACGTCTCGGCGCGGGTGCGGGGGTTTTTGGCGTCTGTGATGCTCGAGCTTGCCCCCGGGGTCTACGCTGGGCTTCGAATCTCGCCTGCGGTTCGAAGCCGGGTTTGGCAAGTCCTTGAACAATGGTTCACACACGAGTCACAAGCCTCCATCATCATGCTTTGGCCCGATAAAGAAATACCAGGCGGACTGGAGGTCAACACCCTGGGCACACCGCCGGTCAAGCTGGCCGACGTCAACGGTATCCTGCTGAGCCAGCGTCCGATCCGTCACACGGAGGAGTAAGCGCGAAAGTGACGTTTTATGTTCTTTAACAATGGGTTAGAATAAAGA # Right flank : CAACCATCGCGCGGGCCGGCGGCGTCAGCGCCCGGACTGGCCACCCGCGGGGGGATCAGCCCGCATGAGCGGCTTGCGCCAGCACCTTTGCCGCCCATTGGTTGAGACTTGTGCCCGCTGCTTGCGCCGCCACCAGCGCGGCGCTGTGCACTTCGGGCGGGACGCGCAGCATCAGGCGGCCAGAGGCCGGCTTCTCCGGCTTTTTGCCGAGCTTTGCGCAGGTCTCCAGGTAGTCATCGACGGCTTCCTCAAAAGCGGTGCGCAGGTCGGCCACGTTGTCTGCGTGGAAGCTCACGATGTCCTGGATACCCAGCAGCCGCCCTACCAGGATGTTGTCGCGGTCGTCAAATTCGATGCGGGCGGTATAGCCCTTGTAGGTCATGGTGTTCATGGCTTGACTCCGATCCGTTCGAGAAAGGTGCGTGCATCCTCCACCTGATACGGCTTGGCTTCCTTCGCCGGGTGCGGGCGGTGGAAGGTGGCGACCTTGTCTCCGAAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCGCATGCGGGGATTGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 5905-6115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQE01000055.1 Tepidimonas taiwanensis strain MB2 contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5905 28 100.0 33 ............................ TTACCTGTCATGTACGCGTAATACGCGGCAACA 5966 28 100.0 33 ............................ CCCAGCAGCGGCTGTGGCAGGCCCGGGACCGGA 6027 28 100.0 33 ............................ CGAGGTGTCGGCGATGGTCGAGGCCGGGCTGGT 6088 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GGCTACCCCGCGCACGCGGGGATCGACC # Left flank : GCGGGGCGCTGGCCATCGGGCACGCCGGGGAGCAAGAGACGGCGCGCTTGCAAGCGGTCTTTGAGCGCCACGGCCATGTCGAGCTTGTTGCTGGCGTTGAACAGCACGCCAGACACCCGATACTGCCCATGCCGCCGCTGCGCCTCCTGCACCGGCATCTCGCCCATGCCGGTCTGGTCGATCGCCACGCGCGCCACGCGATACGCGCGCATGACTGCATCCAGCCGCGCCAGCTGCGCGGCGAAGCTCTCCCCCCGCATCACCTGCATCTCACGCAATGCGAGCACGCCCGCGCCCACGTCCTCCAGCACGGCGATGACCGACAGGTCGCCGCGCGCGGCAATATCCATGCCCACATACACCGGCCGCCCCTCGTAGGGCGGCAGCGCCGGGGCATCGAGCGCGGCCAGAATCTCGTCGAAGGTCAGCCACTCGCGCCCGGCGGTATCCAGAAACGCGCACTCGAATTCCTGCGCCCAGGTGTCCGGGTCGCGCGCGGC # Right flank : CCTTGTTGAAAATGTGGACTAGGAGTCAAGGAATGACATCAGCAAAGCAGGTGCGAGCGCGGTATACGAGGGAGTTCAAGCTGGAGGCGGTGCGGCAGGTGCGCGCCGGGCAGGCGATAGCGGTGGTGGCCAAGGTCCCGGGCATTCCCAAGGCGAGTCTGGGCAACTGGGTGCGGCTGGCGGGCAAGGGCGTACTGGGCGGCTCGGGTGGATCGGGCGATGCGGATCAAGCCGATCGGGTCTTGCTCGAGCAGATGGAGATCGCGCGGCTGCGCGCCGAAAACGCCCGCCTTCGCATGGAGCGTGACATTGCAAAAAAAGCTGCGGCGTACTTCGCGCAGGACACGCTGCGAGGTACGCCTGGATTGACCAAATGAGGTCCCGGTAGCCGGTGAGCATCGCCTGCGAGGTGCTGCAGGTCAGCACCAGCGGGTATTTCAACTGGTTGCGCCGGCAGGACGGCGGTGGTGGCTGCGGTGGGGTGCGCTACAGCGACGAAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTACCCCGCGCACGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA //