Array 1 1128616-1129063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036514.1 Hafnia alvei strain PCM_1220 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1128616 28 100.0 32 ............................ AGCGTACAGACCGGTTCTTTCAATTACACGGC 1128676 28 100.0 32 ............................ GCCCAAGACACAACAAACGACGATTACGGAAA 1128736 28 96.4 32 ..................G......... GTGCGTACCGCCGATAATGCCGCCATAGAGCT 1128796 28 100.0 32 ............................ GCTGAGGTGATTTCACCCTGAAACAGTGTGAA 1128856 28 100.0 32 ............................ ATCTACGCTATCCATTTTGGGGTTGCCCCAAT 1128916 28 100.0 32 ............................ ACGCAACCACTGCGACAACTCGGCCCATAATT 1128976 28 100.0 32 ............................ TTCAAACAACAGCTCTATCCCGGATGAGCGAA 1129036 28 67.9 0 .C.......T.......T..A.A.TTCC | ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATTTGATTGGGATACGCTTGGCCCCGTATTGGGCAAGGTGTATGAGGAGATCGACGAAGTGATGGATGAAGCGCAGCAGGCGGTGGTGGATGAGGAAAAGCTAGGCGAAGAAATTGGCGATCTGCTGTTTGCAACGGTGAATTTATCGCGTCACTTAGGCCATAAAGCCGAAAATGCTCTACAAGCGGCTAACCGCAAATTTGAACGTCGTTTCCGTGCAGTAGAAGATGCAGTGCGCGCCTTGGGCAAAACCATGGAAGAAGCCACGCTTGACGAAATGGAAGCGCATTGGCAGCAGGTGAAAAAGGCTGAAGGTAAATAGTCAAAATCGCGTTGGTTAAAGTGAAAAGGGCTGACGTGCTGCGTTAGCCCTTTTTTTCTGCCTGCTAGTAACTGATTGATTTTAAACAGGCTGAGAATAACGCGCAGAAAAAGGGTATTTTGAATTTATTGCGCGAAATCGCTTTATTTTCACTCAGCTAGTCATAAAATCCAGCA # Right flank : CTCGTCCACTCTATTTTTTACCATCTGGTTGCAAAATTCCTCGTGTGCCTAGTAGAAACAGCAACGTCATTAGCGCCATAGCCAGTAGACCTGCTTGGCTAACACGAGCTCGAGATTGTTGGTAAAGCTTGGTGATAGTGGGTAAGTCTTGTTTGGTTGCTCCAGACTGCACTAACAGGCTGCTGAATCCTTGATCGCTGAGATAGGGAAACACGGTCATATTTTGTATGGTAATGCGGGTCTGAGGTGTGACGGTGATGTCCGCGATTCGGTGTTTCATGCTAAACGTAAGCGTAGTAAGCATGACCGTACTCACCAACGCTACACCAAGCGCTTGACCAATATCACGGGCGGCAGACTGAATTCCGCCTGACTGGCGAGCCTCTTTTTCCGGTAATGCACTGGTGACCAAATATGGCGCGTTGGCTGCAATCACTCCCATGCTGGAACCGATAAAACAAAGCCCGACAATAATCAATGATCTGTTAAAGCTATGCACG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2784801-2784473 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036514.1 Hafnia alvei strain PCM_1220 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2784800 28 100.0 32 ............................ ACAGAACCAAACTATGTGGATGTGGAACGCAG 2784740 28 100.0 32 ............................ TTTCAGCTTCACGCTGGCAAATGAAGAAGGCT 2784680 28 100.0 32 ............................ TGCCGGCTCGATGGGGATCGCGTTGCCGCTGA 2784620 28 96.4 32 A........................... GCCGGCGTTGTCCGTTGTTACCGTTGCAGAAC 2784560 28 100.0 32 ............................ CAAAAAAGTATTATAGTTATGTAAGCTTCGCA 2784500 28 92.9 0 .........................GT. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGCAGCGAATGGCCAATGGTGAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCCAGCAACCGTATCGATCCCGCCTAAGCGCTTTGGCTCCCCGCTGATAGAAACTGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCTTGTTCGCAGAGCGCTGGCAATGCAGGGCTCAGATGAGCTGAAAGCGTTAATCTGCCCCCAACTTTCCGGTGTGATCCGAACGCTACTCTCCAGCGATTCCCCTAAATACGATAAGCTTCCACTAACCCTTTTTTTCGCCTATTTATAAACCTTTGATTTTATGTGAAAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : TTTTGCCTCGGTTTCGTATCCGTGGAACAAAACGTTCAAATAAAAAGCTCACAGGGATGACATGAGTAGATTATTGATATTACTATTTTTTATTTCTTCACCAGTCTTTGCTGTCAGCGATATTAACAACGCCACAAAGGCGGCTCTAGAATTCAATAAATGGTATCTGCAACAGATTGAAAAAGATGTCTATCCGCTGCTAGGAAATCGTAGCCCAGAAATGAGTGAATACGTAACCGCAGAGACGTTGGGAAAGCTGCATAAGGCAGTGAATAGCGATGATGAATTCTATGACGCCGACTTTTTTACTCGTTCACAAGACATTGGGGCTGATTGGCCGAAAAATGTCACCGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTACGTTGCTTATGGGAAAGATATGTACCACACGGTCATTGACTGTATGGTGAAGGAAAAAGGGAAGTGGAAAATCCAGTCGGTAGCGCAGCAAGCTATCGTGCCAAACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //