Array 1 3860296-3860750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXRQ010000001.1 Klebsiella pneumoniae strain RHBSTW-00069 RHBSTW-00069_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3860296 28 100.0 33 ............................ CGATTTACCTCTTCCACCCGCTTGGCGGGAAAA 3860357 28 100.0 33 ............................ TGGTCATCGCGCCCCTTGGCCTGCTCTGCGCTG 3860418 28 100.0 33 ............................ TGCGCGATATCCGCGCCGCGTTAGCGATGTGGT 3860479 28 100.0 33 ............................ TTGTCTGGGACAGCAAAGGACGCCGTAACGAGG 3860540 28 100.0 33 ............................ TCCTTCATTAAGTGAGCAATTGCTTCCTTTTTT 3860601 28 100.0 33 ............................ CCTGCAGCTGGTCGTCGAGCTGACGGATGCCGG 3860662 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 3860723 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGCGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3869504-3870690 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXRQ010000001.1 Klebsiella pneumoniae strain RHBSTW-00069 RHBSTW-00069_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3869504 28 100.0 33 ............................ TACGTCGAAAACGAGCGTAAAACAGGTTTCATC 3869565 28 100.0 33 ............................ TAGATGGATTCCTGGGTATCCCCCCAAAACAAA 3869626 28 100.0 33 ............................ CTTTCTCGACGGACGATCCCGTTTACCTCGTTG 3869687 28 100.0 33 ............................ TGACGCTATTTTTTGCCAGGACAACGGCTATGA 3869748 28 100.0 33 ............................ TTACGTGATCGATAGCGGGCTGTCATATAGCGA 3869809 28 100.0 33 ............................ TCTTTATGTCCGCTTGCGAGGCGATCAGGGTCA 3869870 28 100.0 33 ............................ CTCCTGGTTCTGGAGATTTCGACACTTTCAGGC 3869931 28 100.0 33 ............................ TGTTGTTTATGTGCGCCCCTTTACGGCGGAAAC 3869992 28 100.0 33 ............................ TAGCAGTGGGCTCCGTTGCTCTTCCCCGGTCGG 3870053 28 100.0 33 ............................ TCGCGTTTTATGTGGTTGTCGCTGTACCAGCGC 3870114 28 100.0 33 ............................ TACCGTGAGGTCTCCAGAGCGGGCGAAATCCTC 3870175 28 100.0 33 ............................ CCCTGCTGAGCCCACTCGCACACCAACACCGAA 3870236 28 100.0 33 ............................ TGCAAACCAGTTTCCCGGAAATATGAATGACGG 3870297 28 100.0 33 ............................ TCTCCTCGTCCGGTGTGTCTGCCAGTGTGTCAT 3870358 28 100.0 33 ............................ CAAAAAGCGATTTTTTCGCAGCAGGGTCTTGCA 3870419 28 100.0 33 ............................ TCGCCAGCGGCTGCACAAGTCTGACCAAAATCC 3870480 28 100.0 33 ............................ CCCAAACCCGCAGCGCGCACAAAAGCTCGTTTA 3870541 28 100.0 33 ............................ CAGCTCGCTGTTCGGGTTTGACTGACTGATCGC 3870602 28 100.0 33 ............................ CAACAACACGGCATCCCGCGACCTGCTGAATTT 3870663 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATTTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGTTGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTATGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCATTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //