Array 1 1078526-1078358 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEZ01000002.1 Thalassospira sp. ER-Se-21-Dark scaffold_1_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1078525 36 100.0 30 .................................... GGCATCTTGTGCATGGCGGCACACAGAGCC 1078459 36 100.0 30 .................................... CCAACTGCCTGACCATATTCAGCCCGATAT 1078393 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Left flank : ATCTCTCTTCTGCTAAAACTCTTTGCCGCAGTAAATGCAGGAGCAGCG # Right flank : CACTTTCGGAAAAGCCCCTGATTTCAGGGGCTTTTTTGACGTTTTGGCAAGGTTAGAACCGTCAAATCCGTCGCTCAGAACATTTCAAACTGGCTGGGATTTTTACGCGAATCCTGTTTTGTTCTGCCGGTATAGGAAACAATATTCTCGTATTGCTTGTCGGTGAAATACAGGATATCGACCTTGCCGCCAGCGGGCAGTTTCATATGGACCTTGCGCGTCATGCTTTCTGCCTGTTCCTTGCCGGCACAGAAACGCAGATAGACGGAAAACTGGGCCATTTCGAAGCCGAGGTCGAGGAGGTGGTTGCGAAAGCCGGTTGCGGCCTTGCGTTCTTTTTTGGTTGTGACCGGCAAATCAAACAGCACCATCATCCACATCATTCGGTATCCCGATAACATGTTCCTAACCCAGTTCAAGCGGCAATGGGGCGAGTGGCAGGGAAAGGCTTTGTGTTTCACCAAGATAGCATTGCGCCAGTGAGCCTGCGAGGCGATGCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGCGGTTGGACCACAATTCTTCTTCTGCTAAAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 22687-23051 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEZ01000008.1 Thalassospira sp. ER-Se-21-Dark scaffold_7_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22687 36 80.6 30 C.C..A.....C.TG....A................ CAAAAGCCAAGTGTAGCAAAAGGCGAATTG 22753 36 94.4 30 C..........C........................ ACTCACGCAACCCGCTATTGATGCCATGAA 22819 36 100.0 30 .................................... GAGGCCAGTTTGTTCGATATGATCGAAGCG 22885 36 100.0 29 .................................... GCGCGAAACGGAGTGGTCGCAATGAACAA 22950 36 100.0 30 .................................... CAAGCGCTTCGATACCGGGATGCACTTCCA 23016 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.8 30 GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Left flank : CGGAATTGCTGCTGGGCGATCTGCCAAGCCATGTCGAGGGCACCTCGCGCCTGTATCGCGATGGCAAGGTGATCTGGGAAAAGCAGTTTGTCAGTGGTGAAGACAATATGTCGCATTCCATTGCCAACCTTGAATATCACCATTTCAAATATGATCTGTTCCGCCGTCCGGGCGATGTGCATGCGCATTTCTTTGGCACGGCAACACTTTCATTCGCCGATGGCATCACGACGCAAGACGGCGACGAATTTGAAATTGAATCCGCCCTGTTTGGCCGTCCGATCCGCAACCGCCTGATGCAACAGGCGGAACGCCCGGTGACCATCAAGGCGATCTGAGGTCTCTCTGAGACTCCCAAGGGCCAGGAAGCCTTTCTACCTCCAAACGACACGACTTGCCCCGGTGCTGCAATGTGCCGGGGTTTTTCTTTTGCTTGTTCTCTGCGGAGTGAACGGTCTTTGAAAGAGGGGGGACGCAAAAAGCGGTCGTTCGATGAATAG # Right flank : ACCAGATCGCCAACCGACAGGCCATAATA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTTGCGGTTGGACCACAATTCTTCTTCTGCTAAAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 411-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEZ01000016.1 Thalassospira sp. ER-Se-21-Dark scaffold_15_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 410 36 100.0 30 .................................... ACGAACCAGGACATCGATCAGGTCCGCGGC 344 36 100.0 30 .................................... GCTGCCGCCTGTTTGGCGCGGTGCCGGTTG 278 36 100.0 30 .................................... TACGTTGACCGGCTCCGATGCTTTCACGCT 212 36 97.2 30 ...........C........................ CGCAAGCTGCGCTGTGACCGCTGCGGATCA 146 36 100.0 30 .................................... GTTTTTACGGCCCATAACCTGAGTGTAGTA 80 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Left flank : | # Right flank : CTGCCATCCGGAACGGGATCAGCGTTGCGTCGTTGCGGTTGGACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGCGGTTGGACCACAATTCTTCTTCTGCTAAAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 361-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEZ01000018.1 Thalassospira sp. ER-Se-21-Dark scaffold_17_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 360 36 100.0 30 .................................... TGCCATCCGGAACGGGATCAGCGTTGCGTC 294 36 100.0 30 .................................... TGCTATCTATGGAACGACCTTTGGGGTCGG 228 36 100.0 30 .................................... CCCGTTCGTATCAAGGCAAGCGTCTACAGT 162 36 100.0 30 .................................... CATATTGCAAATGCCTGGTCGCACTCATGC 96 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Left flank : GCTAAAACACCAGATCGCCAACCGACAGGCCATAATA # Right flank : CACGCAAGGACAAGGCACCACCGTTGTCAAGTTGCGGTTGGACCACAATCTCTCTTCTGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGCGGTTGGACCACAATTCTTCTTCTGCTAAAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //