Array 1 19661-19333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXW01000026.1 Gallibacterium anatis strain 1797 contig000025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19660 28 100.0 32 ............................ AGCCTACAGGCTATGCCAATCAGGGACAACTT 19600 28 100.0 32 ............................ TAACGGCGTTTCAAATGCTTGTACAATCTTTG 19540 28 100.0 32 ............................ ATAAGCCGTCACAATTAGCGGAATTTTTAGAT 19480 28 100.0 32 ............................ ACACCATCAACCGTTAGCCGGTTTGTAAGCAA 19420 28 92.9 32 ..C......T.................. TTCCCGAAACCATCCGATATTCGAGATTTTAC 19360 28 75.0 0 ..............GAAA.TT...A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.6 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATACTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACAGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCTAAACAAGCGCAAATCAAACGTTACCCACATGTTTTCTTAAAAAGCAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATATGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACCTCTAAAAAAGGGTTTTTATATTAAAATGTTCTTTAACAATTGACTCTCCTTATATCATAAGGTATTTGTGTCTA # Right flank : ACAATTACTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCTTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTGTCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGGAGAAACAAGCCAAGGCTTAATTCGGGGATTGGTTGTTTTTATCGGTTGATAACAAAAACGATGCCGCTCTTTTACACAAGAAAAAAGATCTTGGTAAGCTTTATCACTATATGCAAACGCATAATGCCAATCGCTTTCCTTATCCGGCAAGCAAACAAAGTCTTCCATAGGCTGTTTTGAATGACGAAAAGGTGCTACAAGCGAACAATGCGAAGTCAATTTCGCATTTTCTGTACGCCAATAACCATTGATATAATTTGTCTTTTCGTTATGGAACATC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36270-39795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXW01000004.1 Gallibacterium anatis strain 1797 contig000004a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 36270 36 100.0 34 .................................... ATGATATTTGCTTTTTATGATATCGATAACTTCT 36340 36 100.0 34 .................................... TTCTAGTTAATACGGTTTCTAGTTCAATCTTAGC 36410 36 100.0 35 .................................... TGATAACCTGAATGGGTATAAAGGCTTATCGGTAG 36481 36 100.0 35 .................................... TGAATAGCAGTTTTTAATTCTGCGGGATTGTTTAA 36552 36 100.0 33 .................................... ACTAAAGCACATTTACATACTGTGCAATTTTCG 36621 36 100.0 34 .................................... TCGTATTTTCTAATGATTTGCTAACACCGTTGTA 36691 36 100.0 36 .................................... TTAATTTGAGGATAAAGATAAGCAAGTCTATTTACC 36763 36 100.0 36 .................................... CGTCTACCCTTAGTAGCTTGCTCTTTTGCCTTAGCA 36835 36 100.0 36 .................................... TATGGGTCGGGCGGTGGTCATAATTGCCAGACACGC 36907 36 100.0 35 .................................... AATGCATACCCAATGACTCCACAATCCCAATCACG 36978 36 100.0 34 .................................... AAAGTGAAGAATGATGGTGCGAAGATTTCAATTT 37048 36 100.0 36 .................................... AATATCATTAGGATCTTTATCCTTTGCAATAGATTC 37120 36 100.0 34 .................................... AGGCGACGGCTTGCGTATTATCGCTAGCAAAGGC 37190 36 100.0 36 .................................... TGGATCGTTGAAATCTAAAAGATCGTGAAGAACATC 37262 36 100.0 36 .................................... TCGCTCCCATATCTTCTATGGTGTTTTCTAATGACT 37334 36 100.0 36 .................................... TTTTTCTTTCTTTACTCATTTTAGTTTCCTCTCTCT 37406 36 100.0 36 .................................... GGTTTTGTGCCACTCTGGGCTACCTCTTTGTTCTCA 37478 36 100.0 36 .................................... AATGTTTTATAAATACCTTCATCTAAAGCGGTTTGA 37550 36 100.0 36 .................................... TTCTTGATTGCTTTCGATTGCTAACTGATAACCGTT 37622 36 100.0 38 .................................... CTGCTGGATCGTCGCCTACTTCGAGGTGCAGGCGATTA 37696 36 100.0 36 .................................... ACTTCGAGGTGCAGGCGATTAATCTCTGCGTACTGG 37768 36 100.0 35 .................................... ACGGGTTCGTCCTGTGCTTTTTCCAATACCGACCC 37839 36 100.0 34 .................................... CAGCGAGCGTCTTTATTTTTATCCACCAGTTGCT 37909 36 100.0 34 .................................... CCTTTGTGCCCTCTTGTTTGTTGGTGGGTGTATT 37979 36 100.0 37 .................................... AGCCGTACAGCACTGAAAGTTACCTTGCTATAATGCA 38052 36 100.0 33 .................................... TCACGAAGTCCTGATGGGTGTTACTCCACACCC 38121 36 100.0 35 .................................... ATCGAGATCTCTCACCGCTTTTAGGGTGTAATAGC 38192 36 100.0 33 .................................... AAGTGAGGATTTTTCAATCCTCGAGTTTAAAGG 38261 36 100.0 37 .................................... CTCATAACCTTCCGCGTCTTCGGATAGGCCATAAATT 38334 36 100.0 36 .................................... GCCTGAAAGATAGGCTAATTCAGCACTCACATCAGT 38406 36 100.0 34 .................................... CATCGATCCGCTTCACAATATCGACCTTAGTTAC 38476 36 100.0 34 .................................... CTGGTGGCGTCATCAAGGACGCAGCGGGCGTCTT 38546 36 100.0 36 .................................... TACCGCCTTGAGGATTAATCCTTGAGGATTAATCCT 38618 36 100.0 40 .................................... CGTCACCGTCTTTTGGTGTGAGCAGCTTCTGCTGTTCTAA 38694 36 100.0 37 .................................... GATACCCATTTTTCAGGGTCTGGTACATATTGATATA 38767 36 100.0 35 .................................... ACCCTCTGCCCACGTATAGAATGAGCTTGCAAATA 38838 36 100.0 33 .................................... TATCGTGGCGTTATAATCCATCCCTTTCAGCTA 38907 36 100.0 35 .................................... TCTTTGAGCAATTTTAATTTTGCTTCTGAATAAAA 38978 36 100.0 36 .................................... TTTTTCAAGTCATCAGTTTAAAGGGCATCCCCTTTA 39050 36 100.0 33 .................................... ATAAGACTTTATAGCCTTTATCCATCCAATAGA 39119 36 100.0 36 .................................... AACGGTTCGCCGTCATAGTTACGGCGGTCTTCGTGT 39191 36 100.0 36 .................................... TCTTGGATCTAATCCAATATAACAACATTTGTAGCG 39263 36 100.0 35 .................................... ATCGAAGCCCTGTTCAGCTGCGATTTTAGCGATTT 39334 36 100.0 37 .................................... CTAAAGCACGTTGTTTTAGTGTGGCAGGGTGCTGTGT 39407 36 100.0 36 .................................... TTCCCTGCACCGCCTTTATATAGCATCCTGTTTAGT 39479 36 100.0 35 .................................... CGTATTGCGTGGTTTTAGGCGTTCTGCTGCCTCCT 39550 36 100.0 34 .................................... ATGACGGTGCATAACAAGTTATGCGGGAAAGCCA 39620 36 100.0 36 .................................... TCTACCTTTAAGGTCTTCAATGCGTGGCTTACGACT 39692 36 100.0 32 .................................... CCTCCTCTGCCTCTAGTATTTTTCCTAGTAGC 39760 36 86.1 0 ...............................ACTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 50 36 99.7 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACCGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATTGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAGGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACAGCGCTGCCTACCAGGCTATGATTTTGCTTAAATAATAATCATATTGGGGGTTAACTATGCAGTCATTCATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGTGTCGGGA # Right flank : TTATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTATAGTAACGGTGATATATACTTAACTTTGTTATTACGAAGTAATAATGAAATTAAGCATTTAGTGTATAAATTTAGGAGAATTTTTATGAAAACAATTGCAATTATTTTAACGACTTTATTTGCGGTTACCGTTACTGCGCCTGTGTATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCCCGTTGCGGAGATCGTGCTGCAGACAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTTATTATTTACTATAGTTATTATTTTCGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAAGCCCGGTGGAATATTATGATTATGACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28953-30527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXW01000021.1 Gallibacterium anatis strain 1797 contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 28953 32 100.0 34 ................................ ATTAAGTTCTCAACAAAAAACCGCTAAAAAGCGG 29019 32 100.0 36 ................................ TTGATAATTTTGCCCGTTTTGGCGACCGTTTGGCGG 29087 32 100.0 35 ................................ TGCACAGTTAGCAAAATCCAATGAAGAACGAGAAA 29154 32 100.0 35 ................................ TTTTCAATTACCTAATGCGGTGGTTGATGACTATT 29221 32 100.0 35 ................................ TCCTGATAGTTTTTAATTTGCGCTTGCGATATAGC 29288 32 100.0 35 ................................ TAGGATCGTTGAGTTTCCCTGTTTCAGGTGTACCG 29355 32 100.0 36 ................................ ATAAACCGCACTTGGTCGGTAAACCTGCCGGCTATC 29423 32 100.0 34 ................................ GACGAACGTAATAATCGTTTAGGATGGAGTGATG 29489 32 100.0 34 ................................ CCGCTATGATACCCGGATTAATTACGCTTGATTG 29555 32 100.0 34 ................................ AATGTGCAAGATTGGCATTCGGGTTTACAGGCAT 29621 32 100.0 35 ................................ ACTAAAGATGCTAAGACTAACATTGCTAAGGTTGG 29688 32 100.0 34 ................................ AACTCACAATTAGATTTAATACTCTCTAAAACCT 29754 32 100.0 36 ................................ ATCTAATTCCTGAACTTGTTTAGCTAGCTTCTCTAC 29822 32 100.0 35 ................................ GTTTTCCGCATTTCTGCAACACGTGGCACAGTTTC 29889 32 96.9 38 .....A.......................... ACGCACGCCACCGTCACGCACAGATGAGGAGTAGCACC 29959 32 96.9 38 .....A.......................... TGCGCTTTGCCCACACCAGCTAAAAAGGCTTTATATTC 30029 32 96.9 35 .....A.......................... CTCTCAATGATTGGAAGTATTCGGGGGTGAATTGC 30096 32 96.9 34 .....A.......................... TTCTAAAAACGCCGTTTCGCAATCATTCGCACCC 30162 32 100.0 35 ................................ ATTCAAGTTGTACCGGCGACCTTTATGGCGTTAGC 30229 32 100.0 35 ................................ CTTTCAATGACGCCCCCAATAAAAAAGCACCTTCC 30296 32 100.0 37 ................................ AATAATCAACAGCTAACCTTTGGCTAAGGAGAAACAA 30365 32 100.0 34 ................................ ATCAAATTAAATCATTTAGTAGCCGTTGAAATTC 30431 32 100.0 33 ................................ AAGCCCGCACGGCTCGAAAAGATTAAACGCTTG 30496 32 90.6 0 ...........................T..GT | ========== ====== ====== ====== ================================ ====================================== ================== 24 32 99.1 35 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : TTTTAATGCGTTAGGAGAACATTATGTTGATGCTGATTACTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGCGATATTACTCCGGATCAATGGGTTAAACTCAAAACTAAATTATTGGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTATCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGCGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCATTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATACATTCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTGGCGAAATAGGGGAAGTAAGCCTTTATTTTTGCTAATGTTTTAGTATATGCT # Right flank : TCAATACCAAATCATCTCAGTTGGCATACATCTCTTTTTAACAATTAAGATCCACTAAAAATGTCGTCATTAATCATTACCTAACACATTCAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGCCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACTGCCTGGCTTTCCAATAAATTATGATTTTTTTCTGCCACTAACTGTAACTTCCGTTGTAATTCAGTGGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTGCGGTATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTCTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //