Array 1 403-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFMF01000940.1 Klebsiella pneumoniae strain 775-DZ2-4B NODE_943_length_402_cov_1.73818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 402 25 89.3 32 ---......................... CAAAAGCTGGCAAAACGTGGGCGTATGACGGT 345 28 100.0 32 ............................ GTAGTAAAGCCGTACAGCACATCAATACGGGT 285 28 100.0 32 ............................ TACTGCGTAAACGCCTAGTCTTGTCAGTGCTG 225 28 100.0 32 ............................ TTTAAATCATTAGTATTGATCATTGCATCGTC 165 28 100.0 32 ............................ CAAACCTTATCTTCTAGGTTGTCTAAAAAAGC 105 28 100.0 32 ............................ TTCTTCATCAATAAGCATAACTTCATATTTAT 45 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 CTTCACCACCGCATAGGTGGCTTAGAAA # Left flank : | # Right flank : AGTATATAGCAAAGTCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCACCGCATAGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACCATCGCATAGATGGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1239-479 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFMF01000059.1 Klebsiella pneumoniae strain 775-DZ2-4B NODE_59_length_10907_cov_35.2982, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1238 29 100.0 32 ............................. GCTGTCAGTACTCAACGTTATAGAAATTCCTC 1177 29 100.0 32 ............................. GAGTGAAAGTGATAGCAAGAGTGTAATGGCTA 1116 29 100.0 32 ............................. GCAACTATTGCCTGCATTGCTGTAGACAAATC 1055 29 100.0 32 ............................. AATCAATACGCCCTGATGCTTAAAAATGGCCG 994 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 933 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 872 29 100.0 32 ............................. TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA 811 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 750 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 689 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 628 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 567 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 506 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.6 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //