Array 1 21186-23135 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLQ01000067.1 Malikia granosa strain P1 contig_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21186 28 100.0 32 ............................ CGTCAACTCGGTCGCAAGGGGGGGCGCAAGCC 21246 28 100.0 32 ............................ TGTGGGCAGCGCTGCGCCGCAGTGTGGGCATG 21306 28 100.0 32 ............................ CAGATCCTCGGCCATGAGGCCAGCCGCAGCCG 21366 28 100.0 32 ............................ GTATTGCTCTGACGATCTCGAAGCGGGCGTGA 21426 28 100.0 32 ............................ AACCTGATGGGCCTGGACTACTTCTACCAGTA 21486 28 100.0 32 ............................ GTTTCACGGGCGGGCAAGCGGCTTTCTCATGT 21546 28 100.0 32 ............................ TTGAACAGTTTGTATTTCTACCATAAACCGGG 21606 28 100.0 32 ............................ AGCACCGGGGCCGATACCCCCCACGCCGAATG 21666 28 100.0 32 ............................ TGATATTCTCGCTTGCCAGAGGCCTAATTTCG 21726 28 100.0 33 ............................ AATACAACGCCAACTGTTATTCTGATCAGTTGT 21787 28 100.0 32 ............................ CATTCGGGCTGATGGTCCTCAGCATTCGGAGC 21847 28 100.0 32 ............................ GCAGCCGGCACTGACATTGCCGCTGTCGGTGC 21907 28 100.0 32 ............................ ATGTGTCTACACCAGTCATCTGAAGTTAGGAA 21967 28 100.0 32 ............................ CTGTCGCCTTCGCTGAAAAGCTCTATCCGATG 22027 28 100.0 32 ............................ AACACGCCCCAGGAGCGCGCCTCGTTTTCGTT 22087 28 100.0 32 ............................ TTCAGTCAGCGATGGCCGCCAGGATCAGGTCG 22147 28 100.0 32 ............................ TCAATGAAGTGGTGCGCTACATCACGACCGTT 22207 28 100.0 32 ............................ ACCCCGGTTGAGTGGAAAGAGTAATACCGTTT 22267 28 100.0 32 ............................ GTTCGCAGTCCAGAAACGCCTCAGAGGGTCCA 22327 28 100.0 32 ............................ TCCCCGGCCAGCGCCGCGTCGGTCTTGGTGTA 22387 28 100.0 32 ............................ AACGGCGACGCGCGCAAGCTGTCGCTGTCGAA 22447 28 100.0 32 ............................ AGCAGCAGACGCAGCAGCAGATGCAGCAGCAC 22507 28 100.0 32 ............................ AAGGACAAAGCGCAGCGGATCAAAGACGATGG 22567 28 100.0 32 ............................ GCCACCGTAGGTCAGCACGTGGACCGGCTGGC 22627 28 100.0 32 ............................ TCAAGGCTGGAGACCTGGGTCATGGACTGCTT 22687 28 100.0 32 ............................ TCGACCGGCTCGCAGTGGCTGGCTGCGATGGA 22747 28 100.0 32 ............................ GCTATGGCGGCGTAGGACATGCCCCCGGAACG 22807 28 100.0 32 ............................ TTCCAGCGCGAAAGGGTATAAAGCGTTTTTCC 22867 28 100.0 32 ............................ ATGTCGCGCCTGGAGCTGGAGACAGTTCAGGC 22927 28 100.0 32 ............................ ACCCCCTCACCATCCGGCAAGAGCAGCGGAAT 22987 28 100.0 33 ............................ ATGCGCAGCATGGGGGGCACCGCAACGTCTGCC 23048 28 100.0 32 ............................ TGGATCAGAGGCCGCGACGGATGAACTTCACA 23108 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 ATTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : TGGCTGAAAGGCATGCGAGATCACCTGGAGCAGCCACAACCGGAACTTTTGAATGTGCCAGACACTTGTCAGGGGCACCGTGTGGTCCGTCGCGTCCAGGTTCAAAGTAGCGCAGAGCGTCTACGCCGACGCCTTGTCAAGCGCCATCCGGGTCAAGTGGATGCCGAAGAAGCCTTGCGGCGAATCCCGGACGAGGCGGCCGAGCGTACCCGGCTACCCTATGTCCAACTGCACAGTCGCAGCACGGGTCAGCACTTTTTTCTGTTTGTCCAACACGGACCACTGCAGATTACGCCGCTACCTGGTGGGTTTAGCGCTTACGGGTTGAGTCAGCAAGGCGCAACGGTTCCTTGGTTTTGATCAGGCACGCACCCTTTTTTCTTCGAGTAGGCTTAGATCTAATGAAATCAACATGTTACGTTGACGTGTAAAGAAATGGTGTTGCCGATGATCAGCTAGAATATTCTATAAGATCAATATCTTAGCCCCAAAGTGGGCTT # Right flank : TCTCGAAGCTTTGATCAGGCCGGGAGTGATTTCAAGGTGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2665-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLQ01000091.1 Malikia granosa strain P1 contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2664 28 100.0 32 ............................ TGCTCCCGCGCCTGGAAACGACTACAGACCCG 2604 28 100.0 32 ............................ ACACTGTTGCCGACGTTGATGTCGATGCCGCG 2544 28 100.0 33 ............................ CTGCCGGGTGATCGCCGTTGGCGTTTGGAGTTT 2483 28 100.0 32 ............................ AGCACCCGACACAGATGCGACAATGGAATCTT 2423 28 100.0 32 ............................ AGCACGGACTGAGCCGAGATGGCGGTCATGGT 2363 28 100.0 32 ............................ AGGAGCTAGCCAGCAGGGGCACCAAGGGAATC 2303 28 100.0 32 ............................ CAAGCCGTTCAACGAGCAGGAATGGCTGCGCA 2243 28 100.0 32 ............................ TCTATGGCCAGTGCATGTGTTAGTTCGTCCAT 2183 28 100.0 32 ............................ TTCATCTACATGAGCAACTTCGCCAAGGCGGT 2123 28 100.0 32 ............................ AGGTGCGGCATTCATCATTCGACAGGCCAGGA 2063 28 100.0 32 ............................ GATAGGCCGCAGCCTGGCCATGCAGCGCGCGC 2003 28 100.0 32 ............................ TGAAGAATTACCCGTACCTGCTGATCAACCAG 1943 28 100.0 32 ............................ TTGTTGGCCAGCTGCAGCGTTGCCGCATCCAG 1883 28 100.0 32 ............................ TACCACGAGGAATGGGGCGATGATCCCGCCAG 1823 28 100.0 32 ............................ TGTGGGCGCGCGGGCAGCTTAGCCGGGGTAGC 1763 28 100.0 32 ............................ ACGCTGAACAGGCGGTCGCCGCGCTCAGGATC 1703 28 100.0 32 ............................ ATCTACTACCCGGAGCAGAAATGATCGACCGC 1643 28 100.0 32 ............................ GATCTGCCGGCATGCCATCAACGAGCATGGCC 1583 28 100.0 32 ............................ TCTTCGGTTTTTGCCCTGGCATCGGCACCGCT 1523 28 100.0 32 ............................ AGGGAGGATGTGGTGTTGATGTTCGACAAAGC 1463 28 100.0 32 ............................ ATGCGTGAACCCGACTTTGTAGGTCGAGTTGG 1403 28 100.0 32 ............................ GTACCGCTGGACCAGTGCCAACGCCACTTTGT 1343 28 100.0 32 ............................ AGAACCGACTGAGCGGCCAGGCTGGTCATGGT 1283 28 100.0 32 ............................ TTCTCGCGGCGACAGGGCGTAGAAACGCTGAT 1223 28 100.0 32 ............................ GCGCTCGGTAACGTGCGCGAACAATTGACAGG 1163 28 100.0 32 ............................ ACTCGGCGCCATGCGTCGAGCGGAATGGGGGA 1103 28 100.0 32 ............................ GGCCGCGTGATTGACGATGGCCGAATCACGCA 1043 28 100.0 32 ............................ TTCTAGGTCAGCGCCGGACAGGTTCGCGCGGG 983 28 100.0 33 ............................ CTGTCCACCAGAAGTTGATCCATGAGCTGCGAC 922 28 96.4 32 ..................T......... ATGCTCGACCGGCTCGACTTCATCCCGGAGGA 862 28 100.0 33 ............................ CTGGACACCCTGCGGGGCGTACCACCCCACCGC 801 28 100.0 32 ............................ CTAGATTGTTGCGGCTCAACGGCGGTAGCGTC 741 28 100.0 32 ............................ ATGTACAGACGGGCACACCGACATCAGAAATC 681 28 100.0 32 ............................ GAGGAAAAGAACCTGGCTGTGATGCAGAACAT 621 28 100.0 32 ............................ CATTTCAGATCGGCCGCAGGCTCGAGGACGGT 561 28 100.0 32 ............................ AGATGGACCCGATGTTCGATGCGATTGCGCAT 501 28 100.0 32 ............................ TTTGCCGGGCTCGCCCAATGCCAGCGACATCA 441 28 100.0 32 ............................ GCTCACAGCATGGCATGGCCAGAATCTCGTCC 381 28 100.0 32 ............................ TCGATGGTCTTGGGCGTCTTCTTGCGCCAGCG 321 28 100.0 32 ............................ GACATGGATGCGCCGTCCATGTCGGCCCGAAG 261 28 100.0 32 ............................ TTGTTCACCCATTTTTCCCTCTGCACGGATGG 201 28 100.0 32 ............................ CGTTGCCCCTCCCGGCTGTCGCAGTGTTGGCG 141 28 100.0 32 ............................ TTTGACGGCACCAATATCACCAGCTATGCGAG 81 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.9 32 ATTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CGGGCACCTTGAAATCACTCATCAGGCCGGCTAGCTAC # Right flank : AAAGGGCGAAATCAAGCGCTACTGGTCCATTACCAGGCCGTTGAAAAACCCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 84-1472 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLQ01000141.1 Malikia granosa strain P1 contig_141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================= ================== 84 28 100.0 32 ............................ GCGCTGGGTCTTGCCGGACGGAGCCGGGGTAT 144 28 100.0 32 ............................ CTCGTCCCGGACAGATTGACGTGCAGCGTGTG 204 28 100.0 32 ............................ GTCATGTCGGCCCGACTCGGAAAACCGATGAA 264 28 100.0 32 ............................ CACTCGCGCCATATAGGCGATTTCTGCCGCGT 324 28 100.0 31 ............................ AAAACAATGATGGACCAATTTCACCGGCTCA 383 28 100.0 32 ............................ ATGGCCGACGAAGGCCTGATCGAGCGCAAGCC 443 28 100.0 33 ............................ TGCAATCGGGTAAGCGATGGGCGCATGCTCCAC 504 28 100.0 32 ............................ CGCACCGCAGCTGTCGACCAGGGTCACTGCTG 564 28 100.0 32 ............................ TTGGACCAATGCGCCCTCTGTCGCCGCCGCTG 624 28 100.0 32 ............................ TCGATCCGTTTCTCCTGGTACTCGTGCATTGT 684 28 100.0 32 ............................ TTGAGGAAGAAGCCAAGCTGGCAGCGCAGCAG 744 28 100.0 32 ............................ ATGCCGGCGCTGGCGTAGCCCTGGGCCCGTAT 804 28 100.0 32 ............................ ACCGTGTCGATTCAGCGCGGGATCGCAGGCGC 864 28 100.0 32 ............................ GACGTGGAGCAGATCCGCGCATCCGGCGACAC 924 28 100.0 32 ............................ TGATGGCGATCACCGTTCCCCAGGACGTGAAG 984 28 96.4 32 ....................G....... ATTCATGTAAGCATCTGTTGTGGGATCCTGCA 1044 28 100.0 73 ............................ TGCGCGACTTCCATGCGCAGATCATGGGCGATACTCAGAAACTGGCGCTGATTGCCCTGCACGAGCAGTACGG 1145 28 100.0 32 ............................ AGCTCAAGCAGGCCTTGCGCGCCAATGGCGGC 1205 28 100.0 32 ............................ TGCCGCTGGCCGTGCTGGTCACCAGCCCGATC 1265 28 96.4 32 ...............A............ AGTAAGCGGACTTTGGAAATACCACCGGGTCA 1325 28 100.0 32 ............................ GTGACGGCTTCCAGGTGCTGACAGATGGCATC 1385 28 100.0 32 ............................ CGGTACTGAATCGCTGGGGTCGGTGAGAAAAT 1445 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================================================= ================== 23 28 99.7 34 ATTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GAAGTGCTGGTCAGAATGCTTTCTCACAATCGTCGGTGGTGACCTTGAAGGCATCGACGGTGTATTTTTCAACGGCCTGTTACA # Right flank : AACGCCTGGCTCGACGATCAGTAAGCGTCGCCTCATTACCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //