Array 1 28542-24917 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOMF01000048.1 Klebsiella pneumoniae strain KCJ3K65 NODE_48_length_28584_cov_8.287065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28541 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 28480 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 28419 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 28358 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 28297 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 28236 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 28175 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 28114 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 28053 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 27992 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 27931 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 27870 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 27809 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 27748 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 27687 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 27626 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 27565 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 27504 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 27443 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 27382 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 27321 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 27260 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 27199 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 27138 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 27077 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 27016 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 26955 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 26894 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 26833 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 26772 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 26711 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 26650 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 26589 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 26528 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 26467 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 26406 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 26345 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 26284 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 26223 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 26162 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 26101 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 26040 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 25979 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 25918 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 25857 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 25796 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 25735 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 25674 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 25613 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 25552 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 25491 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 25430 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 25369 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 25308 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 25247 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 25186 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 25125 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 25064 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 25003 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 24945 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 60 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGATAAACCGTAATATTGATAAATTCGATGAAGTAACCGGA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOMF01000614.1 Klebsiella pneumoniae strain KCJ3K65 NODE_614_length_224_cov_1.000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 98 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 159 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGGCACCAACGTTTACGGTGCGGTGGTGAAACAAG # Right flank : GCAATCCCAGAGCGCGAATATCTTGGGCTCTCGTGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //