Array 1 9584-8762 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBDW01000048.1 Klebsiella pneumoniae strain P53 contig00051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9583 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 9522 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 9461 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 9400 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 9339 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [9334] 9277 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 9216 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 9155 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT 9094 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [9089] 9032 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 8971 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 8911 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 8850 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 8789 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 95.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : CCCAGCATGCGGGGGGTATCGGTGTGTGTTGGCGTTCGTTAAATATTGTTAGT # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6017-6588 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBDW01000066.1 Klebsiella pneumoniae strain P53 contig00069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6017 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6078 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 6139 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6200 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 6261 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6322 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [6376] 6376 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6437 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6498 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 6559 29 86.2 0 .....................AGA....C | A [6585] ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.5 31 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CGCAG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //