Array 1 3842789-3844343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057657.1 Escherichia fergusonii strain RHB19-C05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3842789 29 96.6 32 ........T.................... CCAAAGGGGTGGGGTGTGCTGTTCTGGCTCCA 3842850 29 100.0 32 ............................. CAAACTGACCTGATAGAAAAGGCAAAACAAGC 3842911 29 100.0 32 ............................. GATAATGCTGAAATTGGGGAGGTAATTTCTAA 3842972 29 100.0 32 ............................. CGGTAGCGCGGACGGTATATTATGTGAGTATT 3843033 29 100.0 32 ............................. GTCTGGGAGTGTCCATCGGGCAACTTCGCGCA 3843094 29 96.6 33 ............................T GTGGAGTATCAGTGCCTGGGTGGCAAGCAGTAA 3843156 29 100.0 32 ............................. CCGATCACATCATGTTTATTCGCGGTCGTATT 3843217 29 100.0 32 ............................. GGTCCAGGACGCTCTCAACGCCCTCGAAACTG 3843278 29 100.0 32 ............................. AGATGGAACGGTAATGGCTGCTTCTGTTGTAT 3843339 29 100.0 32 ............................. CGAGTTGTACCGCTGTTCGATCCTGCATATGT 3843400 29 100.0 32 ............................. GCCAGTAAACTTCACCCATGAATCCCAGATCA 3843461 29 100.0 32 ............................. CCCGCGAGCGAATGCAGGAAATGCTAAACATT 3843522 29 100.0 32 ............................. TGTTGATTTAAATCAATTTCGTGAACAGTCGT 3843583 29 96.6 32 .................A........... CCGCCGCCGCGTCGCGTGAAACACAAAAAGCC 3843644 29 100.0 32 ............................. CTTTTTCAACGTGATCTATGTACACGATCCGG 3843705 29 96.6 32 ............................C CAACTCGCCCCAGACCGACACGGATGCTGGCC 3843766 29 100.0 32 ............................. CGATGGTTTGCGCGTCCAGCGTGGCGCGATAA 3843827 29 100.0 32 ............................. TGCAATAGCGATGATTTAATGTGCAAAAAGTG 3843888 29 100.0 32 ............................. ATTTATACGATGACGAATGGTCAGCCGGGTTT 3843949 29 100.0 32 ............................. ATGGACCGTGCCGCTTTTCGCCACCTGACGCC 3844010 29 100.0 32 ............................. CGGCCTCACGCGGATTCTTCCCCCGCCGGAAT 3844071 29 100.0 32 ............................. GCCAACTTCTGGTCGATGAAGTGCTGGAGTTC 3844132 29 96.6 32 ..................T.......... ACGCCAGCGGGTGGAAACTACTACCTTAATCT 3844193 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 3844254 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 3844315 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAATACTTCTACTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCTCATCCTGGACTAATCATTATCATTCTCTACAAATTCTATGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTACATTGTAAATATTAGATTAAAATAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3859303-3860795 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057657.1 Escherichia fergusonii strain RHB19-C05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3859303 29 100.0 32 ............................. CCGGGAGAGATTGGGTCGAAGGGCTGGACCCT 3859364 29 100.0 32 ............................. TCCGCTCAATATGAAAAAACGCTGGCTACAAC 3859425 29 100.0 32 ............................. GGAACAGAGTTAATACTTTCAATCTTGAAACC 3859486 29 100.0 32 ............................. GAATACCATTTATTTACATAGTATGCACACAA 3859547 29 100.0 32 ............................. CATCTATTTTGCATCGACACTTACTATGATGT 3859608 29 100.0 33 ............................. GGGAACGGGTGCAGACCACCTTTCTGACGGATG 3859670 29 100.0 32 ............................. ACCACTTTCACCGACAAAGAACTGATTAAAGA 3859731 29 100.0 32 ............................. CAGGATATGAAATAGCACCCACTTTGCGGGCA 3859792 29 100.0 32 ............................. ATATCTCCCGTTAAATCAGAGACATAAATACT 3859853 29 100.0 32 ............................. GCTGATAGAAACCCTGATTTGCTGAATTGGGA 3859914 29 100.0 32 ............................. GTTTGCTCGAAATTGTTTCTGGCTGCTGTCTC 3859975 29 100.0 32 ............................. GCGCGGTCGCTACAATTATGGGCGTTGGCCGT 3860036 29 100.0 32 ............................. CAACGCCAGCCACGTTACCCGCTGGCGATTAG 3860097 29 100.0 32 ............................. GATTGTTTGAGATACGAGCAAAGGCGGGTGAT 3860158 29 100.0 32 ............................. ACGCGATGTGTGACCTTAAAATATTCACCTGG 3860219 29 100.0 32 ............................. TTAACCGTGGCTAACCCGCAACTTGCTGTTAA 3860280 29 100.0 32 ............................. CCGGTTATGCTTCGGCGGACGTAGCAAAGGTG 3860341 29 100.0 32 ............................. AAATCCGGTTCAACCAGCTCCACAACGGCACC 3860402 29 100.0 32 ............................. CCACTGAATATCAATCAATAGCTATTGGTGCG 3860463 29 100.0 32 ............................. AAACGTTGGTATAAGTCTTTATAGGGCGTCCG 3860524 29 100.0 32 ............................. AACACCTACGCAAACGAGCAGTGGCTGAAAGG 3860585 29 100.0 32 ............................. AACAGGCGCTCGTTGACGTATACAGAGCATTA 3860646 29 100.0 32 ............................. CCTGGCCGCCGAGGTTATGAGCGCGCGGCAGA 3860707 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 3860768 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4560938-4561085 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057657.1 Escherichia fergusonii strain RHB19-C05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4560938 28 100.0 32 ............................ AATGGTGAATATGGCAGAAAAGCCCTTTGCGA 4560998 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 4561058 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTGGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTGCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACGCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //