Array 1 58-2386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYV010000102.1 Frankia sp. CN4 NODE_102_length_31931_cov_41.606266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 58 37 97.3 35 ...................T................. GCCACGGACAGCAGGTCGAAGGTCGCGTTGTGCGG 130 37 100.0 37 ..................................... CCCCCGTCCTGCGCGGGGTCGTCTGGGATGGGCTCGC 204 37 100.0 35 ..................................... TTCGACCTCGCCGAGTCGCGGGCGCGCACGCGCGA 276 37 100.0 35 ..................................... ATCCAGATCGGCGAGTCGGTCAACCGGGTGGCCAA 348 37 100.0 36 ..................................... CGGATCAGCGACATCGTCAACTACATCCGGGTTCAA 421 37 100.0 35 ..................................... ACCGGGTCGGCTTCTTCGGCAAGGCCGTCCGGGGA 493 37 100.0 37 ..................................... AGCGCCACTTGACGGCCGTTTAGTCGGACTACACGTG 567 37 100.0 34 ..................................... CAGGGCTGACGCCTGAGCGCGAGCTGCGCCAGCC 638 37 100.0 35 ..................................... GTCCTCTGCGTCCGCGACGGCCCGATGCCAACCGG 710 37 100.0 36 ..................................... GTTCTGCCCGTCATCAAGAAGACCATTGCCGCGATG 783 37 100.0 34 ..................................... CGCAAGGAATCGTTCATCCTGGACAACCTCACGT 854 37 100.0 34 ..................................... CACCAGATACCGTCCGGCCTGTTCCCCGTCGCGT 925 37 100.0 35 ..................................... GCCAGCGTGGCCGTGGATGCGGCGCGCTCCCGGAT 997 37 100.0 34 ..................................... CGCTGTCCGCGACGGCCGGCGTTGGGCGGCGGGT 1068 37 100.0 31 ..................................... CTCTTCATCGTCGTGACCAGCAGCACGCCGC 1136 37 73.0 36 C.GAT.G.AGC...GA..................... GACCCGGCCGACGCCGCGGCGGAGCTAGGCCCGATG 1209 37 100.0 36 ..................................... TGCTGGCGGCTCTCGGCACTGGAGATCCCCCTGTGG 1282 37 97.3 34 .................A................... CTCCACGCGATCCGCCACGCCCCCGAGCAGATGA G [1306] 1354 37 97.3 37 .............................A....... ACCGTCTGGCTCGCCCCGGGGATAGTCGCGCCGCCCG 1428 37 94.6 35 .......................A.....A....... GACACGATCGGCGGGCAGGGGCATCTGATCCAACC 1500 37 86.5 35 ......TT.....T.......T.A............. GGCGGCATGATCACCTACTGGGGTGAGGAGTCGGT 1572 37 89.2 34 .............T...........A...A.....G. GAGCAAGTCATGCTGGGCCAGTTCGAGTGGGAGG 1643 36 91.9 32 .............T....-..........A....... GGCACTCAAGCCGAAGATCTGGGTGACGCCGT 1711 36 91.9 34 ......G..-...T....................... CCGGGCGGGCCCGCATAGGCAAACTCGGCCCGGC G [1735] 1782 36 86.5 36 ....T.............-..A.......A.T..... TTCGCCGACGTCATGCCTCCTGCCGAGTACTTCCAG 1854 37 81.1 35 .........T...TTTA...C........A....... GACGCGCCTGGCGGCGAGCGCGGCGGGCCAAGTGG 1926 37 75.7 32 ATG......T...TT.....CT...........G... TACTACGACCCGGTAGGCGGTGAGAACGTGGA 1995 36 91.9 34 .............T....-.........A........ GACGAGATGATCACCAGCATCCGCCATTCCGCGG 2065 37 81.1 33 ..G......GA..TT.....C........A....... ATGTCGACCATCGTCAAAACATCACGGCGCAGA 2135 37 78.4 37 ..G......G...TT....TC........AG...... AAGCACGCCCGCGAGGTGATCGCCGAGCACGGCGCCG 2209 37 94.6 35 .............T...............A....... CACGATGCGGCCCGCGACGCCGGTGGGCGCTCGGA 2281 37 97.3 32 .............T....................... CGGATGGCCGAGGCTGGTGCTCACTTCCGGGG 2350 36 78.4 0 ..........C..T........C..C..C.-G.T... | G [2371] ========== ====== ====== ====== ===================================== ===================================== ================== 33 37 93.5 35 GCAGCGCCGAGGCCCCGGCCTCGGCGAGGGTCACAAC # Left flank : GGCCTCGGCGAGGGTCACAACGCCGCCGACGACGAGCTCGGCATCACTCGCGCCCCGG # Right flank : CCCGCCCTATCGCTGTCGCTGTTCGGCGCTGGGGGCGAACTGTTTGATCCAGCCGCATCGAGGTGCGGCTGGTATCTCGGCCGCAGGGTCCGGAGCCCGTAGCACCCGGATCGTCGAGGGAAGCCCCTCCGGGATCACCGCTTCAAGACGCTGGCTCTGGCTGGCCGACTGAGCGGTGGCCTGCCACTCCCCTGCCACGTGCACCAGAGCGACAACTCGTCGTCCAGCGACGGCCAGGCCGGTCTCGATGCCGAGGGAGCGCGCGAGCGCGGCGAGCGTCAGCGCGAACTCCGCGGGTGAGGCTTCTCCGGATCGCAGCACGGTGGCCGTGGGCCGCAGCGCGTCCTGGTTCACGCCGCGTAGAAGGAGGTCGAGGTTGGTCCGCAGGGCGAGGACGGCGAGCGTCGGGTCGATGCTGTGCTCGGCGAGTGCCAGCGCGACCGGTCGCAGCTGTGGGTCCGAGGCCAGGAACGGGAGGAGTTCCTGCCGTCGGCGTTGAC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGAGGCCCCGGCCTCGGCGAGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.10,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-71] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 8955-10141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYV010000098.1 Frankia sp. CN4 NODE_98_length_32703_cov_44.293968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8955 37 100.0 34 ..................................... AAGAACGCGTCCGCCAACGTCGGCGGGCCCGACA 9026 37 100.0 36 ..................................... TTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATG 9099 37 100.0 34 ..................................... GACGCGGCGCTCGCGCTGGAGAGCCGTACGGAGC 9170 37 100.0 35 ..................................... GGCTACGCCAGCGGAGGCGGCTCGTGACCGCGCCC 9242 37 100.0 35 ..................................... GCTCCACACGCGTGTGGTAGCGCGGACGAGGACAT 9314 37 100.0 34 ..................................... TCCGGCTCGGGCCCGGCTTCGCTGAAGGTCGCGA 9385 37 97.3 34 .........................A........... GACACGCTTGTCCAGGAAGCCGATCAGGGGATGG 9456 37 100.0 36 ..................................... CCCAGCCGTAGCCGCCGTCCAGCTCGTCGTCGTCCG 9529 37 100.0 34 ..................................... ATATAGTGCGCGGCGTTCAGCTCCCACGGCTGAA 9600 37 100.0 34 ..................................... CGCAACATCAGCATCATCGTCACGGCGAACGCCG 9671 37 100.0 35 ..................................... GACTCCCGCCAGGTGCTCGTGAGCGAACACCTTGA 9743 37 97.3 35 ................................C.... CTCGTCTGCTCCGCCCACGGCTGGGTCCGCCGCGG 9815 37 100.0 36 ..................................... GACAAATACCCGGGCCTGATCTCGTGTGTGATTCTC 9888 37 97.3 35 ...............T..................... ACGCAGTACACGCGGGTGGTTGCGCTCCACGCTGG 9960 37 100.0 37 ..................................... CACATCAACCCGGCCGGCACGGTCACCTACAGCGAAC 10034 37 97.3 34 .......A............................. GACACTCGCCCCAACGGTGACGTTCCATTTTCTG 10105 36 73.0 0 ....G..ACC..GG....-.T......TC........ | T [10109] ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 97.8 35 GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Left flank : GCGAACCTGCTTCGGAACCCGAAGCACCCCCAGAAACACCGGTACCTTCTCAACTCTAAAACGGGACGAACCGGACGTCGATCTTCGTGTACAGGCGGTCCGGCATGTTCTAATTTAAGAAATCCCTGCTCAAGCAGGGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACATGATCTTGTGAGTGTCTCCTGAGACGGGGCGCTACGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACCGCCCCAAGCGCGCCTAGAAAGGGCCACCCCATGAGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACAAGAACGCGTCCGCCAACGTCGGCGGGCCCGACAGCGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACTTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATG # Right flank : CCTGTTGCCGATAGGCGACGCCAGGGCATGAGTGCAAGCGGCGAGGGGATCCATCTCAGTGGGTCACAATGCGGGCTCCTATACCTACGACCCTGCGGCCATTACGAGAAGCATCGATCTTCCCTCCAGGCACTGGCCGCGAAGGGAAAGGATTAGGCGGGCAACAGAACAGGTCGGCACTGAGACCGGCCGTTGGAGCGATGTGCTTGTCTTCGCCTGGTAAGGTCGGGCCTCCTGCTCGAGGAGCATGGTGTGCTCTGATCGTCAGGTCAAGGATGCGGGAATGTCATAAAGCGTTGATGCTAGGTCTTCGCGAGTCTCCGTATTTTCGTCGATCGCTCTTGCGTCCCTGGGGTGGCCGGCGTGATTCTCCTGACCGGCGGAATTCGCTGTGGCTCTCGGAGCCGGTCAGGAGGGTTCAATGACTCAGCCCGCGCCGTACTCGATGCCCGGTAGCTCTTCGTCAGCATCAGGGTGGTTCGGCCCCTTGGCGTCGCCGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.00,-14.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 18391-20552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYV010000011.1 Frankia sp. CN4 NODE_11_length_73036_cov_29.174125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18391 28 100.0 33 ............................ CGGCGCGAACACCCCCGGAACCGGCTCCCCGGC 18452 28 100.0 33 ............................ AGCACCTCAGGCAGTTCGACACCTCGGCACGGG 18513 28 100.0 33 ............................ TCGTGATCCTTCAGCCGGCCCACCAGCCGGGAG 18574 28 100.0 33 ............................ AAGGCCGCAACACAGATCGTCCTCTGGGCCCAG 18635 28 100.0 33 ............................ CAGGTAGCGGGCGCTCTGGCTGGGGTCCACCGC 18696 28 100.0 33 ............................ GCCACCTCGAGCGCGCGGCGGCCCACTGGCCGC 18757 28 100.0 33 ............................ CATTCCCGAGCTCCATGCGAACCACAGGCCAGC 18818 28 100.0 33 ............................ GGCGCGTGACCCCCGTGAAGCCGTCGGAGAAGC 18879 28 100.0 33 ............................ CCAAGCTGCAACTGGACGAATGGCAACAGCATG 18940 28 96.4 33 ...............A............ TCGACCTTGAGGTTCTGGTTCCCGACGAGCTGC 19001 28 100.0 33 ............................ CACAGGCACGACGCCCCGCCGTACATCAGCAGG 19062 28 100.0 33 ............................ CAGGCGAAGGCCCACCGCGCCTGGGCCGACGAC 19123 28 100.0 33 ............................ TCGGCGAGCTGCAGCGGCCAGCCCCACGCCGCG 19184 28 100.0 33 ............................ CGTGGCGGGGAGGGTGCGGTGTGCTCGCGGATG 19245 28 100.0 33 ............................ CCCTGCGTCATCGCCGCGACCAGCGGAGCCGCG 19306 28 100.0 33 ............................ AAGGCAAGAACGCGCGCGGCATCCTGATCGGCG 19367 28 100.0 33 ............................ CGCCCGTGAGGCGCCCAGCCATCCACCACAGGC 19428 27 92.9 33 ...............A...-........ CAGCCCATCGCGGCTCTTTGTCCAGACGTCGCC 19488 28 100.0 33 ............................ CGGCCGAGAGATCGTCACGGCGATCGGCAACGT 19549 28 100.0 33 ............................ GTCATCAACGGTCCGGTGACGTTCCGCGCCGGG 19610 28 100.0 33 ............................ ATCAACGGGGACACGAACGGTCGCGGTGGTGTG 19671 28 100.0 33 ............................ GGCTACCGGGGCGCAGTGATGCACTCCAGTGAG 19732 28 100.0 33 ............................ GCGGTCGCGATCCCGGTGATGGCGGCGATCGCG 19793 28 100.0 33 ............................ TGCGCCGCGGCGAGACCCAGCTTGGTCGGGATC 19854 28 100.0 33 ............................ TCCATCGCCGGGATGTCCCGCTCGGTCAGGAGG 19915 28 100.0 33 ............................ TCACCGCCGGCCGGATCATGGCCCTGACTGTCG 19976 28 100.0 33 ............................ CCGCCACCGCTACCGCCACCGGGCGCGGCGTAG 20037 28 100.0 33 ............................ AGCTACGGGCACACGATCAGTCGCGACCAGACG 20098 28 100.0 33 ............................ GTCGGCCTGGTCAACGGGCATGACGCGGTCCGG 20159 28 100.0 33 ............................ CTCGTCGTTGAGCCGGCCGAAGGCGGCGATCTC 20220 28 100.0 33 ............................ GACGTCGCGGCGCGCGGCGACGACCATGGCGAG 20281 28 100.0 33 ............................ CACAGGGCCACCAACATGGGCCGGGCTGCGGTG 20342 28 100.0 33 ............................ GCCCCGGCCGTGCCGGCGGTGTCGCCAGCCGAG 20403 28 100.0 33 ............................ CTGCGCCGCCTGCTCGGCGAGACCTACCTGTGG 20464 28 100.0 33 ............................ CCTCGGGCTGACCGAGGAGGACGGCACCCCGAA 20525 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.7 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGAGGTGACCGGCCGCGGGGTCGAGGTTCGCCGTGTTCGGTGGTGTCGGAGCCGGTGACCGACTACATCAGGTTCGAGCACGCGACGACCGCGTCGAACGTCAGCGCCGGGGAGCAGGCCCGTTGGCTGCCCCGGCACCTGGCCACCGGCCTGTTGTTCCCGGCGAACGACTTCTGGGTATTCGATGGCCGGCGGGCCCAGTTCAATTACTTCTCCGGTCGGGGAGAGTTTCTGACGACCCGTCTGTCACCCGACGCGGTGATTGCGACGCAGTGCGCGGTGGCGTTCGAGGCCGCGTGGGAGCGTGCTGTTCCGCACGAGACGTATGACCCGGTCCAACACTGATCGCCCTCACGTCGGGCAGTCTTTCTCCTGTGCAGCCGTCCTCCTCCAATGCCCAACAGGCCCGTCAGCTTCCCGCGGACCGGCTTCGTGACCTGCGCCGCGACGCGGCTCTGACCACGATCGAGCTGGCTGTCGGCGCAGGTAACGTCACGAGC # Right flank : CCCTCGGGCTGACCGAGGAGGACGGCACCCCGAAGGAAGATCCCCGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGGGACGACGAGCACCAAGCGGGCCTGTCCGCCGCCATGCAGGGAAGATCCCCGCGCGGGCGGGGACGACCGATCTTTCTTCGAGTTCAAGTACCTGCGGGAGGGAAGATCCCCGCGCGGGCGGGGACGACGGACGGCGCCGACTACGCCCGCGGCCAGAAAGAGGAAGATCCCCGCGCGGGCGGGGACGACCTCCGCCCCCGCGCCACCGCCAACGGCGATGGCGGAAGATCCCCGCGCGGGCGGGGACGACGACTCGTCCCTGCGCCCGCTGACCTGGCACGACGGAAGATCCCCGCGCGGGCGGGGACGACGCGCGGGCAATAACACCCTCAGCATCCCGACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 20747-22969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYV010000011.1 Frankia sp. CN4 NODE_11_length_73036_cov_29.174125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20747 28 100.0 33 ............................ CGATCTTTCTTCGAGTTCAAGTACCTGCGGGAG 20808 28 100.0 33 ............................ GGACGGCGCCGACTACGCCCGCGGCCAGAAAGA 20869 28 100.0 33 ............................ CTCCGCCCCCGCGCCACCGCCAACGGCGATGGC 20930 28 100.0 33 ............................ GACTCGTCCCTGCGCCCGCTGACCTGGCACGAC 20991 28 100.0 33 ............................ GCGCGGGCAATAACACCCTCAGCATCCCGACAG 21052 28 100.0 33 ............................ GAGTTCGCCTACGGCCGGCTTCGCGCGGTCACG 21113 28 100.0 33 ............................ GCGGCCGGGCCGGTCGAGACCGACGAACCGCCG 21174 28 100.0 33 ............................ GGGGCGCTGTCGGACGTCACCGCCACGCCCAGC 21235 28 100.0 33 ............................ CGCGGTGTCGGTCGGACGCGCGGCCCGAAGTGC 21296 28 100.0 33 ............................ CAGGCGACGAAGCCCCTCGGCATCGCCGAGCAC 21357 28 100.0 33 ............................ AGGCCGAACTCGGCCGCCCAGGCCCGCAACTCC 21418 28 100.0 33 ............................ GACCTGCTCAAGGACACGGAGGGTCGCTACTAC 21479 28 100.0 33 ............................ CACCACAGATCAGTACCGGCGGGTAATAAACGC 21540 28 100.0 33 ............................ TCCGTCCGGTAGCCGGTGATCTCCCCGGCCCGG 21601 28 100.0 33 ............................ CCCTCGGCGGACGAGGCCCAGGTGAAGAAGCCC 21662 28 100.0 32 ............................ CGGGCGCGCTGACGGCGGAGCTTCGCCTGGAT 21722 28 100.0 33 ............................ GCGCGCGGCGACATGGACGCGGCCGGCGCCGCG 21783 28 100.0 33 ............................ CCCCTGTACGCAGGCAACGGCCTCGGCCCCAGC 21844 28 100.0 33 ............................ CCTGGGAAGGTCAGCAACGCTGTCATCAGCCGC 21905 28 100.0 33 ............................ GACATCATCCACGGCCAGATCACGATCAGCCCG 21966 28 100.0 33 ............................ GCGGTCGTCGTCTGGCCGTACACGCCATAGGCC 22027 28 100.0 33 ............................ CGTGATGTAGCTGCCGCCACGTTCCAAGCCACC 22088 28 100.0 33 ............................ GCTGCGGTCGCCTCGAAGTCCGGCGTGATCGAG 22149 28 100.0 33 ............................ ATGCTGAACCCGCCGAACTCCGTCACCCGGTAG 22210 28 100.0 33 ............................ ACGGGCTCGGGCTCGCGTCGGGTCTCGCGTGGA 22271 28 100.0 33 ............................ TCACCTACCGTGATAGTCGTGATCAACGCTCTG 22332 28 100.0 33 ............................ TTGACCGCCGGATCGACGGTTGGAAGACGGGAG 22393 28 100.0 33 ............................ CGCACCCAGCCGGCCGCGATGTCCGCGGACGCG 22454 28 100.0 33 ............................ TGATGTCCGCACGCCGTCCGGTCCGCATCGCGA 22515 28 100.0 33 ............................ AAGATGCGACGTTTCCCGTGTGGCTGTTGGTCA 22576 28 100.0 33 ............................ CGGGTGCCCTCGTGGTGCAGCAGGGCGATCGGG 22637 28 96.4 33 ............G............... CTTGACCTCGACCTCGTACTCGACGTCGAACGG 22698 28 100.0 33 ............................ CTCTCGGCAAGCCGGACGTGCCAGGCGGTCGGG 22759 28 100.0 33 ............................ TAAGCGGCGACGGATAGTGAACCGAAACGGCCG 22820 28 100.0 33 ............................ CACCCGACCGGTGTGGCCGGTGAGACGGCTGCG 22881 28 100.0 33 ............................ GCCTGGACGACGCCGAGCGTGCGCGCGTGCAGG 22942 28 78.6 0 .....................AAT.CGT | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.3 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGACGTCGCGGCGCGCGGCGACGACCATGGCGAGGGAAGATCCCCGCGCGGGCGGGGACGACCACAGGGCCACCAACATGGGCCGGGCTGCGGTGGGAAGATCCCCGCGCGGGCGGGGACGACGCCCCGGCCGTGCCGGCGGTGTCGCCAGCCGAGGGAAGATCCCCGCGCGGGCGGGGACGACCTGCGCCGCCTGCTCGGCGAGACCTACCTGTGGGGAAGATCCCCGCGCGGGCGGGGACGACCCTCGGGCTGACCGAGGAGGACGGCACCCCGAAGGAAGATCCCCGCGCGGGCGGGGACGACCCTCGGGCTGACCGAGGAGGACGGCACCCCGAAGGAAGATCCCCGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGGGACGACGAGCACCAAGCGGGCCTGTCCGCCGCCATGCAG # Right flank : TCAACCTGATTGGGACAGCGTTGTCCAGGAATTAGCTACTGGTCGCGTCTGAATCTACTGGCTGGTCTTCCTCGTGCTGGGGTCGGTTGATCCAGGCTGGCTGGGGCGGCTTCGGCGGGGTCGGGGGCTGGCGGACGAACCTTTCGGGGTGGGCGGCGTAGGCCGCGTCGAGGACTCGGGCGCGGGCTTCGCGGACGAGGGCCGCTTCGCCGTGGTGGACGGTCGCTGGGGTGAGCAGGCCGATCCCGGAATGCCGGTGATCGTTGTTGTAGTAGTCGAAGAATGTCCGGCACCAGACCCGGGCGTCCTGCAGCGTCGCGAACGAGGACGGAAAGTCGGGCCGGTATTTCAGCGTCTTGAAGTGGGCCTCCGAATAGGGGTTGTCGTTCGACACCCGTGGCCGGGAATGCGACCGGGTGATGGCAAGATCGGCGAGTAGCAGCGCGACGGTCTTCGAGGTCATGGAGGTGTCGCGGTCGGCGTGGATCGTCAGCTGGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 24642-25157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYV010000011.1 Frankia sp. CN4 NODE_11_length_73036_cov_29.174125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24642 28 100.0 33 ............................ CGGTAGAAGACGTCCTGGACGTGGTAGCCGTAG 24703 28 100.0 33 ............................ CGGAACACCCTCGGGGCCGGGCCGGGCCGCGAG 24764 28 100.0 33 ............................ GCCAATCATTGGCATTTATGACTGTTCTCTGCT 24825 28 100.0 33 ............................ GCCGCGGTCGTCCAGCCCAGCGCCAGCGCGGTG 24886 28 100.0 33 ............................ ATCAGCCCGTCCGCCATCGCCTCGGCCGAGGCG 24947 28 100.0 33 ............................ GTCTTACGCAGCGTCAGGTCGTGGCGGTCGCGC 25008 28 100.0 33 ............................ GAGCTGCGCCGGAGGTTGGAGACATGAGCCCAG 25069 28 100.0 33 ............................ GTGCCCTGTCGACGGCGCCGGGCACCGTGGTAC 25130 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CACGAAGCGGGCCTTCGCCAGCTCCTTCTCCAACCGCTCCTTCTCCGCCCGCAGCCTTTCCATCTCACGGTCACGGTCATCCACCGGCGGGCGGCCCTTCGGCTTCGACAACCCCGCAAGCGCTCCCGCGTCACGCGCCTTACGCCACTCCACAATATGGGCTGAGTACAGCTTCTCCCGGCGCAGGATCGCACCCTTCGCACCCGGGCCCGTCGCCGCCTCGTACTCCGCGAGAATCCGCAGCTTGTACCCCGGCGAGAACTGCCGCCGCCGCGCCTTCGGCTCCACCTCAGGATCCGGCCGCCGGCCACCGTCCTCACGCTCGTCCACACGGACATCATCGACCAGGCCCAGCCCGGTCGTCACCGCCACCACCACGATCTCCCTCTCCCAACTCCGCCCATGTCATGAGATACTAGGCCTAACCTGTCTCAAGTCATCTTGACGGGTAGGGGGGCGGGGACGACGCGGCGCCGCGCGTACGACTCGGTAACCGAGCC # Right flank : CACTTGCTGAGCTGGGGGTTTGGCGCCGGGTCTGGACAGAAAATATCAGTCCGTCGTGGTCGAAGGATCGTTGCAGCCACAGTCGGTCGGAGGCGGTCCCCGCTCCATGGGCGCCAGGCGAAGCCATTTGTGCGTCCATGCGACCCCGGCGTGATCGAGGTGCGCCACAAGTGATTCAATGCGTGCGTCAAAGCCGACGACGGGGGTGGGCGCCGTGCTTGATGCGGCCATGGCTGTGGTGTGGGGGAAGTCGGATGCGCAGGGGTCGCCGCATCTGCTGCTGGGTCATCTGTTGGATACGGCGGCGGTCGGTGAGTTGATCTGGGATCGGTTTCTGGCTCCGGTGGTCAAGGGCCATCTGGACGAGGTCAGTGGCGGGCGGGGTCGTTCGTTGTTCGCGTTGCTGTGCGGTCTGCATGATGTGGGTAAGGCGACGCCGGCGTTTCAGTCGAAGGATGGCGCGCTCGCCGTGCGGGTGCAGGCGGCTGGTCTGGGTTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 35999-34873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYV010000011.1 Frankia sp. CN4 NODE_11_length_73036_cov_29.174125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35998 28 100.0 33 ............................ TAGAGAGCCACCTCGAATACCGCGCCCGCCTGA 35937 28 100.0 33 ............................ TCGATCCGGTGGGTCGGCCCGGACAATGAGACG 35876 28 100.0 33 ............................ GTGAGCGACTGGATCGAACGATCCAAGGCCACC 35815 28 100.0 33 ............................ GATGTTGTGCCAGGAGCAGGCCGTGTCGAAGGG 35754 28 100.0 33 ............................ AATCATCGACCGTTCAAGCGAGTCCGCGAACTC 35693 28 100.0 33 ............................ CCGTCGAACGAGCCCGTGATCGTGGGCACGTCG 35632 28 100.0 33 ............................ CTTCGATGTCCCCGGCCTCGGCCAGCAGGTCGG 35571 28 100.0 33 ............................ GCTTACGTACAGTCGATGGCCTCGCTGTTGGAG 35510 28 100.0 33 ............................ ACGCCCACGGAGAACGTCACGACCGCCACGCCG 35449 28 100.0 33 ............................ GTCGTCCGTTGCCCGGGTGAGCTGGACAAGCCG 35388 28 100.0 33 ............................ CCGTGACCCCGGCGGAAGGCATCGTCATCGACG 35327 28 100.0 33 ............................ CGCCCCAGGTCGTCGGGGCTGTCCAGCGAGTCG 35266 28 100.0 33 ............................ CTCGTTGATGTACGGCAACATCGTCGCGCCCAG 35205 28 100.0 33 ............................ GCGGCCGGGTCCATCCGCAGCAGCGCGTCCGTG 35144 28 100.0 33 ............................ ACGACCCGGCGGCGGCGGCCCAGCATCGGGGCG 35083 28 100.0 33 ............................ CCGACGACCTTGAGGCAGAACCGCAGGACCACG 35022 28 100.0 33 ............................ GGCGGCCATCAGGTACCGCCGGCGGTCGCGGGC 34961 28 100.0 33 ............................ GTCGTACCGGCCGGACCAGGCGGTACGGACCTG 34900 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGTCAGCAACCTGCGGCTGTCCTCGGAACTCACGGGAAGATCCCCGCGCGGGCGGGGACGACGCGGCGCTGCTCGGCACGAAGGGCGTGCCCAGCGGAAGATCCCCGCGCGGGCGGGGACGACGGCGGCTACCCGAGCGGGGGAGAGGTTGTGGACGGAAGATCCCCGCGCGGGCGGGGACGACCGGTCCGGCCGGTCGCGCCCGCTCGGCGAGCAGGGAAGATCCCCGCGCGGGCGGGGACGACTCGCGGATGGCGGTGATCAGGTCGTCGATGTCGGGAAGATCCCCGCGCGGGCGGGGACGACCTCCGCGACCAGTGCACGGCGGCCGGTGTCCCGGGAAGATCCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGCGGGGACGACTAGAGAGCCACCTCGAATACCGCGCCCGCCTGA # Right flank : GCTTGCTGAGCTGGGGGTTTAGCGGCGGGGGCGGGCGAACAGTATCAGTCCGTCGTAGTCGATGGGTTCGCCGCGGTCGCGGCCGGCGGTGCGGACGGTCCAGTGTTGTTCGTTGTCTGCTGGTTCGATCATGATGGCTTGGCCGTCGCCGACGCGGTGGGCGAGCAGGGTCCAGAGGCGGTCGCGGACGCGGGCGCTGGGGTTGCCGACGAAGACTCCGGCGGCGACTTCGATCATCCAGCGGGTGAGGTGGCCGCGCAGGCCCTGGGCCGTGGCGATGAGGACGACGACGGTCACCAGGGTGGTGGCTGTTCGTCGATGTCGGGTCCGGTGACTCCGACGATGCTGTTCTCGGGTGAAAGGTCCGCGAGGTCGGCTGCCCAGTTGATGCCGCCGGGGACGGCGCCGTCGAACTCGTCCCAGAGGTGGAGTGAGTCCTGGTCGGGGATGTCCGCGTCGTCGCCGAGGAGCAGGGTCTTGATGTCACGGACGATGCGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 5 38478-36193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYV010000011.1 Frankia sp. CN4 NODE_11_length_73036_cov_29.174125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38477 28 100.0 33 ............................ CTGTAGTCGATGAGCGGGGCGGGGAACAGGCGG 38416 28 100.0 33 ............................ ACACCGCTACGGAGGCCGTGGATGCTGGTTAAG 38355 28 100.0 33 ............................ GCATTCCTCGGGGAATTAGGCGAGTATCCGGCG 38294 28 100.0 33 ............................ TCCAGTCGGGGTGGGTGGCGTCGAACTCGGGAC 38233 28 100.0 33 ............................ CGCTCGCACCGGCCGACCTGGACCAGGTAGGCC 38172 28 100.0 33 ............................ CTTTCCGGCGGCATGGAGGTCGTGTCCCGCCAG 38111 28 100.0 33 ............................ GTGGTCCTGGCCCTCGCCGGCGGGGGCCAGGCG 38050 28 100.0 33 ............................ CCTGCGCTACCCCAGAACAGCCGCCCAACCTGG 37989 28 100.0 33 ............................ ACGATCAACCGCTGTTCGTCGACGTCTTTGTGC 37928 28 100.0 33 ............................ GCCCTGGTCTGGATCGCCGGCGCGATCTGGTCC 37867 28 100.0 33 ............................ GCGCGGATCGCGGGTGGCAGGATCAGCTCAGTG 37806 28 100.0 33 ............................ GCGTTCTCGACGATCGCCCGACCGTCGAGAGGG 37745 28 100.0 33 ............................ CCGGCCCTCCCCGGACGGGTCCGTCCTACCGCG 37684 28 100.0 33 ............................ GGCCGGGACCACCAGGCCGTCGCCCGGGACGAG 37623 28 100.0 33 ............................ CCGACCTCCATCGTCAGGTCCTTGAGCAGGGAG 37562 28 100.0 33 ............................ TCCGAGATGCGCTCGGGCAGGGCCGCCGTCAGC 37501 28 100.0 33 ............................ ACAGCGTTCCGGCGGCGTCGCTGGCCATCAGGC 37440 28 100.0 33 ............................ CGCGCCTCCGTCTCCGAGCTCGGCCCGGTCGTG 37379 28 96.4 33 ..........................C. CCGAACCGGGCGGTGGCGGAGAACCGGCGGCCG 37318 28 100.0 33 ............................ TTCCTCGAGGAGAAGGCGGACGTCGCCGACTGG 37257 28 100.0 33 ............................ AGGTGGAGCCCGGACATGTCCTGCGGGTACGCC 37196 28 100.0 33 ............................ CGGGTCTCCGCGTTCGCCCGCCGGACCTCCGTG 37135 28 100.0 33 ............................ ACGGGCGGCGGCGCGGGCGTCCGGTCCGGTCAC 37074 28 100.0 33 ............................ CACTAGCGGAACCGGTAGGCGTCCAACCGTGGG 37013 28 100.0 33 ............................ TCCGAGATCGCCGCCGCCAGCGCTGACCTGCTG 36952 28 100.0 33 ............................ TTCGCTCCGCCCGCGCTGCGCGCGCTCGGGAAG 36891 28 100.0 33 ............................ GCGAGCGCGGCCTCGGCCTCGCGGGCGGCCGCA 36830 28 100.0 33 ............................ TGGGGCCGAGGGCGTACCGGCCGCGCACGCCCC 36769 28 100.0 33 ............................ ACCTACTACGGCCTGAAGGTCCCGAAGTGGGAG 36708 28 100.0 33 ............................ TATGAGGCGCCGAGCGGGGTGCCCACCTATAAC 36647 28 100.0 33 ............................ ATCGGCCCGTCCGCCATCGCCTCGGCCGAGGCG 36586 28 100.0 33 ............................ CCGCACAGCGGCGAGGCGATCCCGCTCGAACCG 36525 28 96.4 33 ................T........... GTCAGCAACCTGCGGCTGTCCTCGGAACTCACG 36464 28 100.0 33 ............................ GCGGCGCTGCTCGGCACGAAGGGCGTGCCCAGC 36403 28 100.0 33 ............................ GGCGGCTACCCGAGCGGGGGAGAGGTTGTGGAC 36342 28 100.0 33 ............................ CGGTCCGGCCGGTCGCGCCCGCTCGGCGAGCAG 36281 28 100.0 33 ............................ TCGCGGATGGCGGTGATCAGGTCGTCGATGTCG 36220 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.8 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGGCTCAGGCCGCGCACTCCGCGCAGATCCCCCAGCCACTCGTCGAGCATCTGCGGCTGCCACATCCACGGGAACGTGTCCGCGTGCACGGCGAACGCCCGCACCGCCCCGAGCCGCTTCTCGACGGTGCTCGCCGCCAGGTTCCGGGCGAGCTGCTGCGCCTCCCAGCCCGCCAGCATCGCGGCGAACACCTGCTCGTCCGGCCGCAGCAATGCCACCCCGTCGACCAGGTGCAGCGCCGACGAACCCGCCTGTGGCCCTCCCAAACCCCGCTCCATCCCGCCCCTTCCGCCCCGCTTACATCCGATGAAGGGATATTTCACCAGATGAAAGACGGTGGTGGATGACCAGGTCAGCGGCTCCTTCGGCGCCCGCCTTGGGGCCGAGCCAGCGCGCGAAGCCCAACGGCCCCAGCGCCTCCTACGGGAGTGCGTTCAGACGCGAGTGCTTCATCCGATGAAACCCGCAGCGGTCGGAGCAAGATATGTAGAAGTAATACG # Right flank : CTCCGCGACCAGTGCACGGCGGCCGGTGTCCCGGGAAGATCCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGCGGGGACGACTAGAGAGCCACCTCGAATACCGCGCCCGCCTGAGGAAGATCCCCGCGCGGGCGGGGACGACTAGAGAGCCACCTCGAATACCGCGCCCGCCTGAGGAAGATCCCCGCGCGGGCGGGGACGACTCGATCCGGTGGGTCGGCCCGGACAATGAGACGGGAAGATCCCCGCGCGGGCGGGGACGACGTGAGCGACTGGATCGAACGATCCAAGGCCACCGGAAGATCCCCGCGCGGGCGGGGACGACGATGTTGTGCCAGGAGCAGGCCGTGTCGAAGGGGGAAGATCCCCGCGCGGGCGGGGACGACAATCATCGACCGTTCAAGCGAGTCCGCGAACTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 6 45495-44009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYV010000011.1 Frankia sp. CN4 NODE_11_length_73036_cov_29.174125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45494 28 100.0 33 ............................ ACCGTCTTCGCCCAGGCCATCCGGTCGTACCAG 45433 28 100.0 32 ............................ TTGATCCCGGAGTTACCGAGCCCGAACCGCTG 45373 28 100.0 33 ............................ CAGCGCATCTCGCTGAACGAGACACCGAGGCGC 45312 28 100.0 33 ............................ TACGTCGCACCCGGCGACGCGCAGACCGTCGCG 45251 28 100.0 33 ............................ GTGCAGGACGGGCCCAACAACCCGCACGACTGG 45190 28 100.0 33 ............................ CCCGCGAGCAGCAGCTTGCGCAGCTCGTAGGAC 45129 28 100.0 33 ............................ GACTTGGTCTACCAGCAGATCGATAACCCCGAG 45068 28 100.0 33 ............................ CCAGGCGCCAGCGCCTCGATAAGCAGACCGAAG 45007 28 100.0 33 ............................ TACACGCACAGCGTGTTCATCACGCCCATCGAG 44946 28 100.0 33 ............................ CCGTTGGTGGCGAGGTTGCCGGTGTCGCCGCCG 44885 28 100.0 33 ............................ ACTACACCTGAGCCGAGTTGGTCCATGCGGGAC 44824 28 100.0 33 ............................ GATGGCGCGCATCTCCGAACCCCCTCGGCGTCG 44763 28 96.4 33 .......................G.... ACCGCCGTGCCGATGGAAACGGCCCGGGTGCCG 44702 28 100.0 30 ............................ GACCAAGCTCCAGCACACCCCGACCGGCGG 44644 28 96.4 33 .............A.............. GCCCTGGCTGGTACGAGCGGGAGACGACGCGGC 44583 28 100.0 33 ............................ GTACGGGATGGAGCCGACCCATCCGAGGGCGGG 44522 28 100.0 33 ............................ GTGACCTATCGTGGCGGAGACTGGTACGACCAT 44461 26 92.9 33 ..........--................ TGGGAGGCACGGCGGGCGCCATCGTCGCGGACA 44402 28 100.0 33 ............................ ACCCAGTGGTCATCCGGCGGCACGTCAGGGTCG 44341 28 100.0 33 ............................ CAGCGTCGCCAAGCTGCCAGGCAAGACCGAAGG 44280 28 100.0 33 ............................ GCGTTGGAACTGGCCTGGGATGGCTCCTCCGGA 44219 28 100.0 33 ............................ GTCCAGTCCAGCCACAGCGGAACCCGCCAGTAG 44158 28 100.0 33 ............................ GCGGTTATCGTCTGCCAGACGACACGCCGCCGC 44097 28 100.0 33 ............................ GCGCCTCGCGCACCACGTCAGGGACCAAGCCAG 44036 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : TCACCGACGCCCTCGACCTGCTCGCCGGAACCCCCGCCCTCTACCCCTGGGTGGACGCCGAGTTCGGCTCCGAGCTGACCACCACCGCCATCCGCGCCGCCCTCCTCCTCTCCGAGCTCCACCTCGACAACGGCGACCACCAAGCCGTGCTCGCCGCGACCACCCGCGGCCTGGCGATCCAGCCCGCCCACCCCGGACTGTTCGCCCTACGCCTCCGCGCCCACCACGCCGCCGGCGACCCCACCGCCGTCACCGCCGACTACCGCGCCTACCTCCGCGCCGAACAAGCCGACGACCCCGACGCAGACACCGACCCCGACCTCGCCCACCTCCACCACACCCTCACGAGAAACACCCGCCGGCCCCGGCCGACCGCCACCAGCTCCCGCGACGCCGACGATCTTGACCCCTGGTAGAAGCTCAAACCGCTGACAGCAAATGTGACAGCGACAAGGGACAGCGTCGCCCCGCCCGGCAGGCGCGCCGGGAGCATGGCGCGT # Right flank : TAGTTACGGGCCCGGCCCGCGTTACGCGACCAGGGAAGATCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGGGCGGGGACGACACACGCGAGGCCCCGCCGACGGTCCGGCTGGTAGGAAGATCCCCGCGCGGGCGGGGACGACACACGCGAGGCCCCGCCGACGGTCCGGCTGGTAGGAAGATCCCCGCGCGGGCGGGGACGACCACCGGGGACTGGCAGGGTCGCGTATTCGACTGTTGCGAGTTCGGCCGGGGCAGCGACGAAGTTTGGCGTGGGGCGGCGATGATGCCGGGTATGGGGGGATCTTCGCGGGATCGGGTGCGTCGGACCGGCATTGTCGCGGTGCTGTTGCTGGTGGGGTCGGTGGTGGCCGCGGTGGTGCTCGCTCGGCGGTATCAGCTGGGTTCGGGGACGGCCCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //