Array 1 96845-95719 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRAB01000034.1 Escherichia coli strain tEC contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96844 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 96783 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 96722 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 96661 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 96600 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 96539 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 96478 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 96417 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 96356 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 96295 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 96234 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 96173 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 96112 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 96051 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95991 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95930 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95869 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95808 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95747 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113532-112344 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRAB01000034.1 Escherichia coli strain tEC contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113531 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 113470 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 113409 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 113348 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 113287 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 113226 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 113165 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 113104 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 113043 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 112982 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 112921 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112860 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 112799 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 112738 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 112677 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 112616 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 112555 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 112494 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 112433 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 112372 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //