Array 1 249124-250919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBKU010000017.1 Klebsiella pneumoniae strain QU-9 K.pneumoniae9_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249124 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 249183 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249244 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249305 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 249366 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 249427 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 249488 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 249549 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 249610 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 249671 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 249732 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 249793 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 249854 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 249915 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 249976 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 250037 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 250098 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250159 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250220 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250281 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250342 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 250403 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250464 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250525 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 250586 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 250647 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 250708 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 250769 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 250830 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 250891 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CCTGAATCTTCACTTCGTCGATCATTCTGCGCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57-1244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBKU010000029.1 Klebsiella pneumoniae strain QU-9 K.pneumoniae9_contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 118 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 179 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 240 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 301 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 362 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 423 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 484 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 545 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 606 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 667 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 728 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 789 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 850 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 911 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 972 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 1033 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 1094 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 1155 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 1216 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGCCGCTTTAACCCGCTCCGGCAGATCCGGGTGAG # Right flank : GTCGTCTGAGTTCCGGCTTACGCCGTGCCGACAGTGTTCCCCGCGCCAGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCGGGGATAAACCGCAGACAGACAGCAGGCAGCAAACAGGGAAGACGTGTTCCCCGCGTCAGCGGGGATAAACCGGGGTTCACTTGGGTGAAACTGAACTAACTGTGTTCCCCGCATTCGCGAGGATAAGCCCGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //