Array 1 3508126-3509173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWJA010000001.1 Hafnia alvei strain FDAARGOS_1439 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3508126 28 100.0 32 ............................ AGCCTCGAAGCTCTTTGTTACATCGGCTCTCA 3508186 28 100.0 32 ............................ GTGCTGGCAATGTTAACCAAGCATGCGAGCAA 3508246 28 100.0 32 ............................ AATTCCATCGGCAGACTTGATGGTCGAACCGT 3508306 28 100.0 32 ............................ TACGACGATATGTTGTCAGCGGCGACGCAAGG 3508366 28 100.0 32 ............................ ATGATCACAAAAGGCGATATTGTAGAAATTGC 3508426 28 100.0 32 ............................ ATATTTACCTTGATATTCGCTCTCAAAATAAT 3508486 28 100.0 32 ............................ ACTATGGGCGCTTGTCGTTACTTGGTCTTTCT 3508546 28 100.0 32 ............................ TACCGTTGATTACCTGTCAACAAAAGACACGT 3508606 28 100.0 32 ............................ CATCGCAGACATACCCGATTAACACACTGGAG 3508666 28 100.0 32 ............................ CTTCAATCGCCGGGTAACAGTTCGCCGCCACA 3508726 28 100.0 32 ............................ TGAGAAATCAACATTCCGTCATCATCATTACA 3508786 28 100.0 32 ............................ GCGCTCAAGCTGGAAATCTTCCCCGTTAAAGT 3508846 28 100.0 32 ............................ CGTTAATCATTGTTTCGGATTGTCTGATTCGT 3508906 28 100.0 32 ............................ CGTATGCGTTATAAGCGAGATGGGCTGCGTAA 3508966 28 100.0 32 ............................ GTTGCGGGATTAATCATCGGTGTTGATACGTA 3509026 28 100.0 32 ............................ ATCATTATTTGCGCTTCATTGCTATTGTCATC 3509086 28 100.0 32 ............................ GCCGGGCAATTTAACGTTAATGCTTACAGAGC 3509146 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCACTGGCGCCATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAGCGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : ACTCACCATGGTTTGTGTTTAATTTTATTCGCTATGTATCAACGTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGTTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGAGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTTGGTTTTTGCGGCGGAGGGGGAACCCCATTATTTGCGGCGAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3621821-3622087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWJA010000001.1 Hafnia alvei strain FDAARGOS_1439 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3621821 28 100.0 32 ............................ ATCACTGAGACGGTGAGGAATCGAATGCTCTA 3621881 28 100.0 32 ............................ GTGATGCTTGGAGTGCGATGAAGCCAAGGATT 3621941 28 100.0 32 ............................ ATCAGGACCTTGTGTTTTGCAGCAAGGCTTTT 3622001 28 100.0 32 ............................ ATCAGGTACCACCGGTTCCATGCTATTACCCC 3622061 27 89.3 0 ....................-.C.T... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCAAGACCTGCTAAGGCCAGCAACCGTATCGATCCTGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGTAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGGGCTCAGATGAGCTGAAAGCGTTAATCTGCCCCAACTTTCCTGTGGGATTCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACGAACCCTTTTTTTGCGCCTACTTATAACCCTTTGATTTTATGTGGGAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACT # Right flank : AAACAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGTCTGTCATACAAATAAAAGCAAACGCTTTCCTAAATTATAAATTCCTATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGATGGGTTTTTCATTTCGTTAACAGCATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACCTATCAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //