Array 1 86718-86990 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZDL01000009.1 Escherichia coli strain URMC_2 NODE_9_length_154822_cov_28.635408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86718 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 86779 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 86840 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 86901 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 86962 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCATTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112692-115344 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZDL01000009.1 Escherichia coli strain URMC_2 NODE_9_length_154822_cov_28.635408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112692 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 112753 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 112814 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 112875 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 112936 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 112997 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 113058 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 113119 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 113180 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 113241 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 113302 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 113363 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 113424 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 113485 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 113547 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 113608 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 113669 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 113730 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 113791 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 113852 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 113913 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 113974 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 114035 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 114096 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 114157 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 114218 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 114279 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 114340 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 114401 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 114462 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 114523 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 114584 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 114645 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 114706 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 114767 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 114828 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 114889 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 114950 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 115011 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 115072 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 115133 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 115194 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 115255 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 115316 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //