Array 1 2430976-2434394 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078120.1 Halomonas sp. 18071143 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2430976 33 100.0 36 ................................. TACGCCGGCTTCGCCGAGCTCACGCACCTGGCCGAC 2431045 33 100.0 35 ................................. CTGACCACTCAGGACGTGATCGAGAAGACAGGCCT 2431113 33 100.0 36 ................................. TGCTCAATCATCTGCCGCCAAGCGAACAATGCGAAG 2431182 33 100.0 36 ................................. AAGGTGAATCTGGAAGTCGACGGCGCCATGGCACGC 2431251 33 100.0 34 ................................. GTCTTCGGCCTCAGCACCGCCGCCTACCAGGAAC 2431318 33 100.0 34 ................................. ACTGGCGGGCAGCAGAACCTCGATATGCTCCGCG 2431385 33 100.0 35 ................................. AATAAGCGCCGCAAAAAGAGCGAGCGCGCAGAGTT 2431453 33 100.0 34 ................................. CCACGCCTGTGTCACGGGTGGCGAAGCGGCCCAT 2431520 33 100.0 35 ................................. GTAAATCTGCCGAGCGCTTGTGTGCTGATCAAATT 2431588 33 100.0 35 ................................. AGCGTGAGCTATAACCACCGCTACACTGCCGAGAT 2431656 33 100.0 34 ................................. ATGCGCCTGCCCTCAGCTTTTGAACGGCCAGCCG 2431723 33 100.0 34 ................................. CCACCCTGGCCAGCCTGCCCGAGATACCAGCCAG 2431790 33 100.0 36 ................................. ATCAACGGGTGAGTGAATGATCAACTGCTGCAGGGC 2431859 33 100.0 36 ................................. TCCGGAAGATGCGCCCCAGGGTGGCGTTGTCGGTGT 2431928 33 100.0 38 ................................. CCACCGCTTTCGCGGTGGGTGTGGGTGGGCTGGGTCAT 2431999 33 100.0 34 ................................. ATGGCCTCGGCCACGGCGCCAGCGGCCCGCTGGG 2432066 33 100.0 34 ................................. GAAATCACCACCGAGAGCGTCAAGGCCGCGCCAC 2432133 33 100.0 37 ................................. GGCAAGCAGAAGGCCAATTTCGTTGGCCGCTACAAAG 2432203 33 100.0 34 ................................. TTGCCGTTATGGGTCAGGCCGCCGCCTTGCTGGG 2432270 33 100.0 36 ................................. GTTTACAACGTCGGCGAAGGCGCCTTCGCCCGCTCC 2432339 33 100.0 36 ................................. ATCCCGCACCCGCTCTTGAGCCGCCAGGCGTTTCGC 2432408 33 100.0 34 ................................. GCCGGGGGCGGGACTCGTGGCACTGGCATCGAGC 2432475 33 100.0 35 ................................. AGCTAGCCCATGGCCAAGGCAAACCCGGTGGCGTG 2432543 33 100.0 33 ................................. GCCAAAGGGTCAACGAAGCCGCCCGCGCCGTCA 2432609 33 100.0 34 ................................. TTTCCAAATCAGCTGTACCAATCGCGCTTCCAGC 2432676 33 100.0 35 ................................. TCCACCGCCCACGCCAGTTTGGTCGAGCGCTACGC 2432744 33 100.0 34 ................................. CCCCCGGATGGCTGCCCCGCCGAGCGTTGGCAGC 2432811 33 100.0 33 ................................. ACCGCCGCCGTGGCACGGCGCAATCGGTACGCC 2432877 33 100.0 35 ................................. TACCCGCATTCGGTCTACGGCTCACGTGAGCTAAT 2432945 33 100.0 34 ................................. GACGTCGCCGCTGCCGAAACGGCCACCATCAGCG 2433012 33 100.0 35 ................................. CGCTGGCACCCCACGCCGTTGCCGCTCAACCAGGT 2433080 33 100.0 35 ................................. TCCTTTATCTCGCGCGTAGCAACATCAACGTAATG 2433148 33 100.0 35 ................................. ATGATCTCGAAGCCGCCGGGGTCGCCCACCCTCTC 2433216 33 100.0 35 ................................. GCGGCGCGCCTCGGCGTCTGGTCGTGAGCCCGGGC 2433284 33 100.0 35 ................................. AGCCTTGGTGAGCTGGCTGATTTGCTGGGTGGCAT 2433352 33 100.0 35 ................................. TGCATGAGCCAATTGGAGGGCCGGATATTGACGGG 2433420 33 100.0 34 ................................. CTTATGCAACGTCACAGACGGGGGGTTAATCGGC 2433487 33 100.0 34 ................................. CACGATGTTGATGCCGAAGCCTTCGAACACGCGG 2433554 33 100.0 35 ................................. TGGCAGCTCCCTGGAACACGAAGTTATCCAGGCGC 2433622 33 100.0 34 ................................. CTTTGCGTTGGCCCCAAAGCGGCGCCGTCAAAAC 2433689 33 100.0 34 ................................. CACTGGGAGCCGCAAGCCATGGACGGCATGGAGC 2433756 33 100.0 33 ................................. ATACCAAACGTCACGCATGCTGGTGACCGGCTC 2433822 33 100.0 34 ................................. GATGCGCAGGGCGTCCAGTGCGGGCAGGTCCGGC 2433889 33 100.0 34 ................................. CATCGCGTCAATGACGGTGACGATCTGCCGCCAG 2433956 33 100.0 35 ................................. TTCGTTGGTCACGTAGTGGCGATCCTTGTGCTTCG 2434024 33 100.0 35 ................................. AAACGCAGTTCGCGGGCGATTTAGCGAGCGTCCAG 2434092 33 100.0 35 ................................. ACGTACTGGTCCAGTGCGTCCAGCACGATGTTGGC 2434160 33 100.0 34 ................................. TCCGGCGTCTTAGCGTCAGCCGCCACGCCGCCCA 2434227 33 100.0 36 ................................. AGCAAACGAGGCTCTGTCCTCAGCGATGCAACAGGC 2434296 33 100.0 33 ................................. ACTGTCTATTATCTCCGTAAGGCGGCGTGGCAA 2434362 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 51 33 100.0 35 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : TAACGTACTGAGGGCAATATTATGATGGTACTGGTCAGTTACGATGTCAGCACCTCTTCAGACGGCGGTGAAGGCAGGCTGCGGCGAGTGGCAAAAGCGTGTCGAGATGTAGGGCAGCGAGTACAGTTTTCCGTGTTTGAAATTGAAGTCGACCCCGATCAATGGGTACGCTTTCGTCAACGCTTGATCGACTTGATTGATGACGAGGTAGACAGCTTACGCTTCTACTTCTTAGGCCGAAATTGGAAAAACCGCATCGAACATATTGGCGCCAAGCCTGCCTTAGACATGAATGGCCCTTTAGTTTTCTAATGTTTCTCTTGTTTGCGAACCCCAATTGTCTTGCCAAACCCCGTCAGGTTCGCAGCTCTTTAATAAATTGATTTTAATAACAAAATTTTCGCTCACTCTTTTGCATCAAGCAAAAATCGGCTAATGCTCAGTGTTTCGCAGAAGCATGTCTTTTTGCTTTTATTTTTCATGATGTTATAAACAGAACA # Right flank : CTCCTTTATCTCGCGCGTAGCAACATCAACGTAATGGTCGCGCCCCCCGAGTTCGACACTTCCAGCCCGATTTCGGCCTGAAATCGGCACTCATGGCATGAGAATTCAGTAGCTTAGCCATCTCTTGCCGAATTCTTTGTAGTGACACGTTTTTCTCTTGATGTCTTGCCAGACATAGATTGGGAGGTCTATCGTAGTGACATGTTTGTCAAAGTCACCAAATCCGGTCCGCGCCGCTACGTGAAGCTCGTCGAGTCTTATCGCGACGAGGCCGGCAAGCCGCGCCAACGCGTGATCGCGACGCTGGGACGCCTGGAAGCCGTCACCGCCGGGGAGTCCAGCGCGCTGATCAATGGCCTGCTGCGCGTCACCGGCCAGCCGACGCTCGAGGAAGGCACCGGCGAGACCGACTTCGCGCCGGCGCGTTCCGTGGGTGATACCTGGCTGCTGACGTCACTCTGGAAAGAGCTCGGCCTGGATGACGCCTTCCGGCGTGTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2436336-2441592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078120.1 Halomonas sp. 18071143 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2436336 33 90.9 34 CGG.............................. GCGCGCTGAATGCTCAGATAGTGGAGATTCGGCA 2436403 33 100.0 33 ................................. CTGGAAGGGGTGGAGCGCTGGATAGACGAGTAC 2436469 33 100.0 34 ................................. ACCATCTTGAAGCCACGCACCCACTCCCACACAT 2436536 33 100.0 36 ................................. GTACCGACCAGTACAGCTCGCTGGCAACGCAGGTGG 2436605 33 100.0 34 ................................. AGCGGATGAGGCGCTAGGCCAGCGTATCGATTCG 2436672 33 100.0 35 ................................. ACGAAGGTGTGGAGCTGCTCGGGGTTTCGGCGCAG 2436740 33 100.0 34 ................................. TCACCGGCCCTAGTTCAGCGCCTGGTCGACAAGA 2436807 33 100.0 34 ................................. ACCCCGATGATGCGCGGTGGCGTTTCGCAGAGAG 2436874 33 100.0 36 ................................. GATACCGTGGATGCCCAAACGCTGGAAGCGCTTGAG 2436943 33 100.0 34 ................................. ACCATGGTGTGCGTGTCACCGAGATCAATGAAGG 2437010 33 100.0 34 ................................. ACCATTCTGGCCAGTGCCTGTTCATCCATTCCCG 2437077 33 100.0 35 ................................. TGCGCCGGTGGGCGGTATATCCAGCATGCCGTCGT 2437145 33 100.0 36 ................................. AATGCGTGATGTTTGGTACGAGGGTGTCTGGCTGAC 2437214 33 100.0 36 ................................. GATGATTGGGTCGGCTTGGCCATACACGGCGAACAG 2437283 33 100.0 37 ................................. GAATACGACCACGCCAACAGCGTGCTACGCATCAACC 2437353 33 100.0 35 ................................. ATCATCTACACCTCGATCACCGCTCACAATCTGAA 2437421 33 100.0 36 ................................. GAACACGTCGCCACCGGGGCTGTTGATGTTGACGAC 2437490 33 100.0 35 ................................. TCGGTCTGGCCTGCGATGGTGTCGGAGCCCTGAAG 2437558 33 100.0 34 ................................. ATCTGATTCAGGAGGGCCGCATTGCTGACGCCAT 2437625 33 100.0 34 ................................. CACGCCGCATGGAAGGGAAGTACGCCCACATCAA 2437692 33 100.0 35 ................................. CGTAACTGCGGCGACCACGGGGTGTATGCCAACCG 2437760 33 100.0 34 ................................. CAGTATCAGTACACACAACGCGTGAGTGCTGAGC 2437827 33 100.0 35 ................................. AAAGGCGGCCCGAACTGAGCCAACATCTCTGACTC 2437895 33 100.0 35 ................................. CGCCCCGAGAAGATCCGCCTGGAGGGCATCACCAA 2437963 33 100.0 35 ................................. CAGATGCGCCACGATGGCGTTGATCTGGGTCTGGG 2438031 33 100.0 34 ................................. ACCAACAACGCCGCCGCAGTGGGCGAGAACCCCA 2438098 33 100.0 34 ................................. AAGTGTGGGTACCGCTGCAAATCAGAACTGACGC 2438165 33 100.0 35 ................................. ATGATCCGCTCCAGGCTGCGCACCTTGCGCCCCAG 2438233 33 100.0 35 ................................. TTTTGGGAGCGGCGGCGGTCGAGGGTGACGTTGCT 2438301 33 100.0 34 ................................. CGCCCCATCACTGCCCCGCGATGCCCGATACCGG 2438368 33 100.0 34 ................................. CTCAGGGAGGCGGAGCTGCCCGACTTCCTGCGCA 2438435 33 100.0 35 ................................. TGCACCGATATCGAGCGTGGGTATGGCGATGTTTC 2438503 33 100.0 35 ................................. TCTCACGACTCGGCATTGGTGCCAAGAAGTGGGAG 2438571 33 100.0 36 ................................. AGGCTATGAGAGCTACATGCGCAGTGCCGACCAGTC 2438640 33 100.0 35 ................................. CAGCGCCTGGACACCACGCAGCTCGCCCGCCTGAA 2438708 33 100.0 36 ................................. TCGCCAAGAGCATGAGCAAAGCGCTATTCGCCGCAA 2438777 33 100.0 36 ................................. GTTTGGCAATCGCACTGCATGGTGTCCTCCAGAAAC 2438846 33 100.0 35 ................................. AAGCCCAACTCGGCCCCCATCATCATGGCCACCAG 2438914 33 100.0 35 ................................. CCATGCACGCGCCTGATGACCAAAGACCAGAAGTC 2438982 33 100.0 33 ................................. ATCGCCGCATTGGTATGTCCAGCCTGCGAGGCA 2439048 33 100.0 35 ................................. TCCGCCAGGCGCTCGGCCTCCTTTTGGCGCTGGCG 2439116 33 100.0 35 ................................. GAGGGCGCTATGCCGTGCGCATGCACGCACCTGAA 2439184 33 100.0 36 ................................. AGTTGTTTCAGAGCGTGGCTCCCTCGCGCTCGATGG 2439253 33 100.0 35 ................................. CTGCTGGAGCTGTCCTTTCAGCGCCTGCACAGAGC 2439321 33 100.0 35 ................................. CTTAGCATTGCCTGCGCCTTGTCGGCGCCGCGATG 2439389 33 100.0 34 ................................. CACGATGTTGATGCCGAAGCCTTCGAACACGCGG 2439456 33 100.0 34 ................................. TTTCGGCTGCGGGACGTTAGCGACCAGCGGGTTA 2439523 33 100.0 34 ................................. CCGGCGATACATCTTGCGCAGCTCCATCAGCCGC 2439590 33 100.0 33 ................................. AATCAACGGGGTGGAGGTTGCGCGGGTGGGCAA 2439656 33 100.0 36 ................................. ACGGCACTGATCGACGGTAAACTCACCCTCGCCTGT 2439725 33 100.0 34 ................................. GCCCGCTTCGGCACCCACGTTGACGACATTACCG 2439792 33 100.0 36 ................................. TTCGATATGCTGGCCGGAGGCATTGACGGCGTACTA 2439861 33 100.0 35 ................................. AACTACCGCAGCGCCGACCGCATCATGGCCGTCAG 2439929 33 100.0 33 ................................. TTGACCCAGGCAATGGACGCATCGCGGCCGCGG 2439995 33 100.0 36 ................................. AGCAGCCACTTCCAGCTGATCAAATCGTCAGTGGGC 2440064 33 100.0 36 ................................. CGCCCCAGCCGCGACGCCACGCGCGCCTACCGGTTG 2440133 33 100.0 35 ................................. ACCACCCGTTCTGTGGAACGACAGCACGGCCATGC 2440201 33 100.0 35 ................................. TGGTGCTCGCCACTTGCAGGCACATCGGCCCAGCA 2440269 33 100.0 34 ................................. TTCTCCATCAGGAAGCGGCGACTCATGCGCGACT 2440336 33 100.0 36 ................................. GCGGATCAACATGGCAGAGCTCCCGCGGGCCACCAC 2440405 33 100.0 35 ................................. AAAGGGTAATGCCATGAGATCAAACCTCTCGTTTG 2440473 33 100.0 36 ................................. ATGTGTTTCTCCAGTGGTGTCGTGTTACATCTCAAA 2440542 33 100.0 35 ................................. GCCGGTCTGGACGCTAAGGGGGGCTGACATGAAAC 2440610 33 100.0 34 ................................. AATGCGGCGGGCATACCTGCCGTACACGTTGACG 2440677 33 100.0 35 ................................. CGCCTGACTGACCCGGCCCTCAAAGGCATCAATCC 2440745 33 100.0 33 ................................. GGTGTCATCGACAAGGCAGTCACCGACAAGGAC 2440811 33 100.0 33 ................................. CATGATGACGCCCTGCATACCCGCCACCGTGCG 2440877 33 100.0 36 ................................. ACGGCGGGGAGTTCATCGCGCCCGAGCGCGGCGGCA 2440946 33 97.0 35 ..................A.............. GCTCGATCTCCTGGGCAATGTGTTCAGCTACGCCC 2441014 33 100.0 36 ................................. TCGCGCTGGGCGTGGGCAGGAGCTGGATTTGGTAAT 2441083 33 100.0 34 ................................. AGCTCAGACCCCTACCACGACCATTACGGGAGTA 2441150 33 100.0 33 ................................. GATGGCTACATCGCAGAGCTACACCGTGATGAA 2441216 33 100.0 35 ................................. TTGCTGGAATTGCTCGCGGCTGTAGCCTGCCGCCG 2441284 33 100.0 36 ................................. ACGCGGGTCTCCATCCTGAAAACAGATGCACCCCAG 2441353 33 100.0 36 ................................. CAGAAGTTGTCGTTGCCCCAGACCACATCATCGATG 2441422 33 97.0 37 ..........................C...... CAAGCGCATTGAGGCCGAGCAGGCGCTGCGCGATAGC 2441492 33 100.0 35 ................................. TGCTGGATAGTCTGCGACCACAGCAAGGGTGACCG 2441560 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ===================================== ================== 78 33 99.8 35 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : TGTCCTGGATCAGCGGGCGCTCGATCGCGCCAGGATGATGGACGGCAAGCTGCTGCTGGTCACCAACATGGCCGACCACGACCCGCAGGAGATCGTAGAGCGCTACCGGGCGCTGGCAGACATCGAGCGCGGCTTCCGGGTGCTGAAGAGCGACATCGAGATCGCACCGGTCTACCACCGGCTGCCGGATCGTATCCGCGCCCATGCGCTGATCTGCTTCCTCGCGCTGGTGCTTTACCGGGTGCTACGAATGCGGTTGAAGGCCAGCGATCACCCCTTGTCACCGACGCGGGCACTGGAAATTGCCCGCAAGATTCAGTTCCACCAGGTCCTGCTGCACCGTCGCGAGACGGCGAGCGGCTTGACCAAACTGAAGCCTGAACAACGCGACCTTTTCGAAGCGATTGGCCTGCCGGCACCGACTGCATCTCGCTTGTAGTGCCAATTTTGAAAACGCGTTTTCAGGTTAATCAGTGGCTTACGCTTCTATCTGTCGAACT # Right flank : ATACTACCAAGGCACGCGCTGCCGAGAACGACTCAAGTCGTACCCCGTCCAGAATGAATATCTACATAGGGAGAATAGATACTCGTGTTACTGGCATATCACCTGATCAATGGTGAAAATCTACTTTTTAAGTTTCAGATAAGGCCTTGATTAGCTCAGTGCCTTATGAAGCTAAAATCTATACCCATGCTCTTAAAAAAGAATCAAACACAGCCTTGCAACCTCCTCTTATTAGCCAAAAGTGGTAGAGTGCGCGACGATTCGCTTTACGAATCGCTAATAATGGTGACCTAACAGGAGAATCGCAGTGCAGGAAACAGCACAGCAGGGAAAGTTTGCGTGGTGGCGCGGTATCGCGCTGTGGAAGAAAATTCTGGCGGGCCTGGCGCTGGGTATCTTGGCCGGGGCGTTGCTGGGCGAGACGGCCAGCATCTTCAAGCCGCTGGGTGATATTTTCATTAACGCGATCATGATGCTGATCGTGCCGCTGGTCTTTTCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3414716-3408458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078120.1 Halomonas sp. 18071143 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3414715 29 100.0 32 ............................. GCCATGCCGCCGTACTCCGCCTGGCTCATGCC 3414654 29 100.0 32 ............................. GCCACTCAGGCGGGCATGCATCACATCCCCGG 3414593 29 100.0 32 ............................. CCATCCATCACCATGCCCAGCGGGCTCCAGCG 3414532 29 100.0 32 ............................. CGCCATGGCCCAGCGCTCGCACTGGTCGGCGG 3414471 29 100.0 32 ............................. ACTGCCCGGTCGCGCTTGAGCTGTCGACCCAG 3414410 29 100.0 32 ............................. CGCCGCGCCCACCAGGCGGGTATCGGCAGCCA 3414349 29 100.0 32 ............................. CGCAGGCTGTCCAGCTCCGCATCCCAGCCGAT 3414288 29 100.0 32 ............................. GTACTGCTGCAACGTGATGCCGTGTCCTTTCA 3414227 29 100.0 32 ............................. ACGGATAATATTCTACAAACGCAGAACGTTCA 3414166 29 100.0 32 ............................. TCCTGGATGGCTCGCTGACGGCGGCTGCCCTC 3414105 29 100.0 32 ............................. AACCTGCCAGCATTGATAGAGAACACGCCCGG 3414044 29 100.0 32 ............................. GCGTCACGGCCCAGGCGCACCTTGGTGACGGT 3413983 29 100.0 32 ............................. GGCAAAGCGTCATCGACATTCGCCAAAGCGGC 3413922 29 100.0 32 ............................. ACTCGGTGCTGCGCATGCGCAAAAAGCTACGC 3413861 29 100.0 32 ............................. CAGTAGAAGCCACCGACGCACAGCCGACCACC 3413800 29 100.0 32 ............................. CTGTTGAAGATACCCGACAGCGAGGACCTGGT 3413739 29 100.0 32 ............................. CGAGCACGGCTTTAGTGCTTTTGCTTATCTAT 3413678 29 100.0 33 ............................. TTCGGCAGGCGTGAAGGCATCCGGGGTGATGAT 3413616 29 100.0 32 ............................. TTCGGCGGCCCGGTCACCCGCGTAACCGTCGG 3413555 29 100.0 32 ............................. CACCTTGGTCGGAATCTCCAGCGACGCCGCGA 3413494 29 100.0 32 ............................. CGCGCGGCTATTGCGCGGTGTTGGCTGTAGGG 3413433 29 100.0 32 ............................. CCCATTGTGCCAAATTCAGATATGTGGCGAGA 3413372 29 100.0 32 ............................. ATGGCGAAGAGATTGAAGACACGCTAGACCTG 3413311 29 100.0 33 ............................. GCGACCAACCCTACGGCGATGCCTCGACCGAGC 3413249 29 100.0 32 ............................. TTTTCCCGGTACATGCTGGCTTCTTCTTTTGT 3413188 29 100.0 32 ............................. ATCGTCGAGGAGATTCGCGAAGACCTGTCCGG 3413127 29 100.0 32 ............................. TACGAGGAGTGCCTGACCCGGGCTGCCGCCAT 3413066 29 100.0 32 ............................. CGAGGACCGCAAGGCTGATGAGCGTGCGAAGG 3413005 29 100.0 32 ............................. TCGTCGATGCGCCCCAGGGAGTAGTACGTGGT 3412944 29 100.0 32 ............................. CTCTACGCCGAGCTGGCCGAGATGGGCAAGGA 3412883 29 100.0 32 ............................. GTGTCTAGCTGTGTAAAGGTCATCTGCAGCTC 3412822 29 100.0 32 ............................. ATAAGCCCGAGGGAATCGCGGGCGCCCACAAC 3412761 29 100.0 32 ............................. TACTGGTCGTGAGGGTCGGTTTCGGCTTTGTG 3412700 29 100.0 32 ............................. GCGAGCAGCTGACCTGCTACATTGGTGATGAC 3412639 29 100.0 32 ............................. GCCATTGGAAATAGTATGGCCGTACCCTGCAT 3412578 29 100.0 32 ............................. GATGAGTTTGCATCCATCAAGAACATTACCCG 3412517 29 100.0 32 ............................. TGTGTCCAGAGGCGGGTGTGCATGGCCCCGTG 3412456 29 100.0 32 ............................. CGCTCTGCCAGGCGCGTGAGAAAGTGGAGATC 3412395 29 100.0 32 ............................. CACCTGCGTGGTTTTGTTATTGGAAGACGATG 3412334 29 100.0 33 ............................. GTGCTGGTGAATGCGTTGTAGATCAGCCCAAGC 3412272 29 96.6 32 ...C......................... CCACTTCGCTGGTGAGCTGAGGCAGTTCGGGT 3412211 29 100.0 32 ............................. TCATGCTTGGGCTCTATGAAGCGCACGCGCAA 3412150 29 100.0 32 ............................. ATGACGCTTCCCAGCAGCTCTTTTCTTAGGTT 3412089 29 100.0 32 ............................. ACGACTCGCGGCGTAGCCCTGGGCCATGCCAG 3412028 29 100.0 32 ............................. TAGCGCCAATCTGGCGGCTCTTGAGAATGTTA 3411967 29 100.0 32 ............................. CCCACGAAGAGGCCCCGGCGAAAGAGTCGGGC 3411906 29 100.0 32 ............................. TACCTGCCCGGCAATGACGACGTGGTGCGCCC 3411845 29 100.0 32 ............................. CGTCAACGCCCAGCCGCTGAGCCAGTTAGACC 3411784 29 100.0 32 ............................. ACTCCAGCCTGTACGACACGATGATCTCGGGC 3411723 29 100.0 32 ............................. CCGTCATCATTCAGAACACGAACATCGGCAAT 3411662 29 100.0 32 ............................. CATGGAGTGAAAAAATGACCATCGAATTTACC 3411601 29 100.0 32 ............................. CCAAATCACCGTGGCCGGTGGCTTTGCTGCGG 3411540 29 100.0 32 ............................. CGCTTGTTGGCGACTCGACTGAACCGCCATTA 3411479 29 100.0 32 ............................. AATGCTCAACGGGATCGGCGGCTCGTACCACT 3411418 29 100.0 32 ............................. CCGCCCACTGAGGCGGCTTTTTCGTATGCGCC 3411357 29 100.0 32 ............................. CCGCCGCGTTGACTAACGCCAAAATTGCAGAA 3411296 29 100.0 32 ............................. CTCAGCCCCAAAGAGCGCCGCGTGCTGGCCAG 3411235 29 100.0 32 ............................. TGTTGCTAGATAGCCGCACGTTTACTAGCTAT 3411174 29 100.0 32 ............................. AGATCGGCATGGCCGTCGAGCGTATCCGGCGC 3411113 29 100.0 32 ............................. GGTCGGCAGACCGAGGACGGCAGCGGCCATAT 3411052 29 100.0 32 ............................. ATGACGGTCGCGCTCAGCCTGCCTGAGGCCAA 3410991 29 100.0 32 ............................. CCGCGTCCCCTTGGACTCGTGTCACTAACTGT 3410930 29 100.0 32 ............................. GCCGCGACGCCATGGAGCAGCTCGGCCTCGAA 3410869 29 100.0 32 ............................. TATTTGCTTATGTCAGCCTTTAACACGTAAAC 3410808 29 100.0 32 ............................. GCATCTCTTGCTCTGCCCACATGGCGAGGGAG 3410747 29 100.0 32 ............................. TCCTTGCTTGGCAGGTCGACGATCATGCAGCG 3410686 29 100.0 32 ............................. CAGCGCCTCTATCTCAATCTGGCCCGCGTCAT 3410625 29 96.6 32 ............................T AGTCCATTCAAGGTTTTCCACCTTATTGTTCG 3410564 29 100.0 32 ............................. CGCTCTGGGTGAGCTAACCCACGGGGCACGCC 3410503 29 100.0 32 ............................. ATGCTGGCCAAGAGCCAGTGGCAGCTTGAGGA 3410442 29 100.0 32 ............................. TCGTATAATTACGATATGGCAATCAGCAGCCA 3410381 29 100.0 32 ............................. CCGGTTCCGGTAGAGGCTTGCATCACCCATCA 3410320 29 96.6 33 ............................A GTCTGGCAGCGTCGAAATCTCCGAAGGCATAAC 3410258 29 100.0 32 ............................. TAGCTCGGTGATGCCGTCTATCTAATAGGAGC 3410197 29 100.0 32 ............................. CATGGCTGTAAAAGCCAGTTCTCGCATATTGA 3410136 29 100.0 32 ............................. TTCGCACTTTCATGTAGCTACCGCAGTGAGGG 3410075 29 100.0 32 ............................. ATGTGGACCAACGACGACCCGAGCGCCACCTT 3410014 29 100.0 32 ............................. CCAAATCACCGTGGCCGGTGGCTTTGCTGCGG 3409953 29 100.0 32 ............................. CTGCCGCGCTCTGGGTTGATGGTCGCCTGCCA 3409892 29 100.0 32 ............................. GCGTAGCGGGCGCACTGAATTGTGGCCTTGTG 3409831 29 100.0 32 ............................. CGTGAGTTAATCGCTATGCACGTGCTTTACCT 3409770 29 100.0 32 ............................. TCGCGCGGGATCTACGCTTAGCCAACCGCGCG 3409709 29 100.0 32 ............................. GCGCCGACGAAGATGCAACAACGGCCAACATC 3409648 29 100.0 32 ............................. GCGAGCTGTGGGCCACCATCCAGCGCGGCGAG 3409587 29 100.0 33 ............................. CCGCCACCGGCGCTCAGAATGCCGGTGGCCTCC 3409525 29 100.0 32 ............................. CTGGCCCGCGATGATATCGGCGTTTATGGCAT 3409464 29 100.0 32 ............................. CAGAAAAAAGAAGAGAAAAAAGCACTAAAAGC 3409403 29 100.0 32 ............................. CCCACACGCAGCCAAACCACGGTGGCTAGCAC 3409342 29 100.0 32 ............................. CCACCACTGCAACCGGGTTAGAGATCCCGCCC 3409281 29 100.0 33 ............................. CATGTCATCTTTCGGGCCCGCCTCAATCATGAC 3409219 29 100.0 32 ............................. CCTTGGGCGCGGTAGAGCTCGCGGGGTTTGAG 3409158 29 100.0 32 ............................. CTCAGCCCCAAAGAGCGCCGCGTGCTGGCCAG 3409097 29 100.0 32 ............................. CGTCAGTGCGATGACCTCGCCGCGCAAGCGCT 3409036 29 100.0 32 ............................. TCGACAACACGGGTCGGGTACTCAGGACCAGA 3408975 29 100.0 32 ............................. ATCGAGGAGGAGGAAGGCCGCCGCGTCTTCTC 3408914 29 100.0 32 ............................. GTCGGTCGCCATGGCCTTGATATCTTCGGCCA 3408853 29 100.0 32 ............................. GGGACATATTCAGCCAGCACTTTGAAAACTTG 3408792 29 100.0 32 ............................. CGGGTTTAACTGCCGCTGCCGCGCCCTTGCCC 3408731 29 100.0 32 ............................. GCGGCCACTGACTTCGAGGTCATGGTGGGCAA 3408670 29 100.0 32 ............................. CTGGCCCGTACAACGTGGGCGGATCTGGGAGT 3408609 29 100.0 33 ............................. TTGGTGAAGTGAACAAGACGACCGGGCCTTCGC 3408547 29 100.0 32 ............................. GATGATCCTATCCTTGCCTTTCTGGCTGTCCA 3408486 29 89.7 0 .........G......C...........T | ========== ====== ====== ====== ============================= ================================= ================== 103 29 99.8 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GCGAGATCGAACCGCCACCACCGCCAGCCGACGCCGTACCGCCCGCCATCCCCGAACCGCCGTCGGTGGGCGATAGCGGCCATAGGAGTCAATGAGATGGCCATGCTCGTCGTTGTCACCGAAGCCGTGCCACCTCGATTACGCGGGCGGCTGGCCGTCTGGCTACTGGAGATTCGCGCTGGCGTGTATGTGGGCGATGTCAGTAAGCGGATTCGAGAAATGATCTGGGAACATGTCAACGTCCTGGCCGAGGATGGCAATGTCGTCATGGCCTGGGCCAGCAACCATGAGTCCGGCTTCGAGTTCCAGACCTATGGTGCTAATCGGCGTGAGCCCTGGGATCACGATGGGTTGCGTCTGGTACGCTTTCTGCCCGCCGAAGCTAAGTAGCTGATAATCCTAGATCTTTAAAAATGCAGTTTGTACAAAAAATAAGCAAAATCGTTGGTGGAATTTCTGCTGTCGATTTTTCTTTTTTAGATCAATTATCTACAGTTAGA # Right flank : GGTACTCGGTTGAGCGCTACTATTGTGGGCTTGATGCAGCTCTACTTTCCGCTGGCGCTGACACTATTTTCTATTTCTGGAAAATTCCGCCAGCGCCTAAACGATGCGTTTACGCTCGTGCCTGCCATCGAAGAAGTGATGCGCACCGTCGGGAATATGGCGACAGAGATGGTGAAAGAGGCGCATGTGGTAGTGGCGGAGTAAGTGATGCTCCTTTCAAGTATCCGAAAAGGCCGCCAGTAATGAAGCGGTCAGTATTGGCGATGGATTAGCTCCGGTCAGAATCGTGGCGATATGAGCCCCCTGAGGCCACTGGTCACGCATGGCATAGGCGGCTGCCAAGCCGAGTGCCCCTGCGGGTTCCAACAGCAGCCCCAGATGTTCCAGGCCAAGGCGCATGCCCTCTTCGATACGGGCTTCGTCCACGAGCCAAATGTCATCGACTACATCACGCATATCCTCCAGTGCCTCGGTAATAGGAGCGCGAACCGCCACGCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3426867-3425373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078120.1 Halomonas sp. 18071143 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3426866 29 100.0 32 ............................. ACGAAATGACAGTGATCGACTGAGCAGTCGTC 3426805 29 100.0 32 ............................. CCCTGCGAACCCATGTAGGGGAAAGCCACCAC 3426744 29 100.0 32 ............................. TCAGGATACCAAGCGAGCATACACAGAGGGGC 3426683 29 100.0 32 ............................. CCAATATCATCGAGCGGCTGCGCGACACCCGG 3426622 29 100.0 32 ............................. GCCTTGAGCCCGCCCGCAGTCAGCGTGCCGTC 3426561 29 100.0 32 ............................. CGTTCATCGTCGGCACCGAAGCGGCCAACGGC 3426500 29 100.0 32 ............................. CGTATGGCGTTGCCGACCTGACGTCTGAGCTG 3426439 29 100.0 32 ............................. CACGCACGGCAGCCTTGAGGCGCTCTGGGATG 3426378 29 100.0 32 ............................. GCGGCGGGCTAATGCGGATCGTGTAGCCGTGG 3426317 29 100.0 32 ............................. CACTCTGACTGGTACTCGACCAGCTTGTCGCG 3426256 29 100.0 32 ............................. TGGCCATGGCCATCGACACCAGCGCCAACTCG 3426195 29 100.0 32 ............................. CCGTGGTCGTTGTCTGTGCAATGGATGATGCG 3426134 29 100.0 32 ............................. ATGAGGCGTTGGGCCAGCGTATCGATTCGGTG 3426073 29 100.0 32 ............................. GCGTGGTGCGGGCTATAGAGGATGCCATCCAT 3426012 29 100.0 32 ............................. GATATTCCGATTATTGAAATAGCGACGCCATT 3425951 29 100.0 32 ............................. TATTAACCTCACTGAGCAGACGGCCAGTCCCG 3425890 29 100.0 32 ............................. GCGCGCCGCCGCTGTCCAGGTCTTCGGCCTCT 3425829 29 100.0 33 ............................. GCGGTTACCAGCGTATCCTCGACCTTATCCAAC 3425767 29 100.0 32 ............................. TGCTGGAAAACGGTGAGCGCCCTGCCGATCTC 3425706 29 96.6 32 ..........................T.. GCACTGTACTCTCTGAGGGGGTGGGCTTTTTG 3425645 29 96.6 32 ..A.......................... CGCACAGAGCCAGACTCAGGTTCACGAGAGAG 3425584 29 100.0 32 ............................. TCACGATTTTAGCGATGTGTCTCCTGGGCAGT 3425523 29 100.0 32 ............................. TCGGTGATTGCTGCTGGCGTCGCTAATTACAT 3425462 29 100.0 32 ............................. AGAGACCAGAGGGGGCCGTTATACGGTGCTGA 3425401 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CCGCGAGCAGGGCCACCCCAAGTCGCTGCGCTGGGCCCTGCTGAAGAGCCTGGACAACGAGAACCTGACGCCCAAGCAGCTGGCGGCACTCCAGGAACTGGTGGCCGATCAGAGCGCGACGTCTGATGCCTGGGTGATCAAGGAGAAGCTGCGCTGGATCCAGAAGGCTCCGACGCCGCGATCGGCTCGGTGGCGCATCACGAACTACCTCAAGGTCATGAAAGCGGCGGTCTCGGAGAAGCCACTTCTGAAGCCAATGGGCAAGGCCCTGGCGACGCTGGAGCGACATGCAGAGGCAGTGGTCAGGCGTTGGATCTCGGGGCTGACGAACGCACGACTGGAAGGCATGAACGGCCTGTTCCAGGCGGCTCGGTCACGCGCACGCGGCTACCGGAACGAAGCCAACTTCATTGCCATGATCTACCTGATTGGCAGCCCGGTGGGCCGCCTGTTCGATCAGGCCAAATCCACGTGAAGTGACGAAGAACCCTTATCCGCAA # Right flank : AGTTGAAGGGAGCGTTTTCTGGCTGAAGTGGTCCATTGTAAACATAGGAATACACTGTGGACGGCGATCAGGCTAGTGCCTCCAGGATCATCGACTGAATATTCATATCTAAGGCTGGTGTGGAGCTAGAAGTGCGTCTGGAGGTATGAATTCTTGCAAATTTATAACTCTGGGGTTATTTTTTAATTGACCAAAAGAACAAGGAGGAAGGGTGAAAAGCAAGGATGTCATCAAGGAGATGGAAGCTGATGGATGGTATCTAGATCGTGTTAGTGGGAGCCATCACGTATTCAAGCACCCTACCAAGCTCGGCAGTGTGCCCGTGCCTCATCCGAAAAAGGATTTGCCTAAGGGCACCATCCACAATATCAGAAAACTTGCGGGGCTCAGGTAGCTCGGCCGTTCAGGAGGTAACTCATGCAATATCCGGTTGCTATCGAATGGGGCGATGAACACACCGCCACCGGTATCGTCATTCCGGACATTCCCGGTGCTGTGAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3429261-3428256 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078120.1 Halomonas sp. 18071143 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3429260 29 100.0 32 ............................. AAGAGAGCTGCTGGGTAGCGTCATCTTCAAAA 3429199 29 100.0 32 ............................. TGATCAGCCAGGTCTTGCTTGGTCATGGCGAT 3429138 29 96.6 32 ............................A GCGAGCGCCGCCTAGAAAGCAATGACGACACC 3429077 29 100.0 32 ............................. CTATGACGCCGTGGTCACCAACGTGCCTTTCG 3429016 29 100.0 32 ............................. ACAGCGAGTAGCCTGCCAAGGGCATAAGGCGC 3428955 29 100.0 32 ............................. AGGGTCTTCTGCGATCGGACCTGCATGGCGAA 3428894 29 100.0 32 ............................. CCATAGGAGCCACGAATGCTACCCAACATCCT 3428833 29 100.0 32 ............................. TCTCCGAGAACTCGCCCGAGTCCTCGAGCAGT 3428772 29 100.0 32 ............................. TTGCCGCCCGCACCCACCCGGCGCGATGGCCT 3428711 29 100.0 32 ............................. TTCTGGCGCGCGCTGTCCAGCGACACGCCGTT 3428650 29 100.0 32 ............................. TCGACCAGCGCCGGGGCTTCGATGGTGATGTT 3428589 29 100.0 32 ............................. CTACACCCACATGTCAGACCCCATGAAAGAAC 3428528 29 100.0 32 ............................. TGATCAGCCAGGTCTTGCTTGGTCATGGCGAT 3428467 29 96.6 32 ............................A GCGAGCGCCGCCTAGAAAGCAATGACGACACC 3428406 29 100.0 32 ............................. CTATGACGCCGTGGTCACCAACGTGCCTTTCG 3428345 29 100.0 32 ............................. GGAGGCCCGTTCTCTAATGGCCGTTTACGTTG 3428284 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GGGTAGAGTTACCCGCCGCGGTGGATTGCGTGAAGCTCAATCAGCGTCTGGCGCAGCATGCCATCCACGTGGCGCCGGGCTCGCTGTTCTCCGCCTCCGGCAAGTTCCGCCAGTGCCTGCGGCTGAACTATGCGTTTACGCTCACCCCCGCCATCGAAGACGCGGTGCGAACGGTAGGTGAGTTTGCCACTGAGATGGTGGAGGAGGCGCAGGCGTCGCTCGTATAAAAACGACAGAATCAGTCAGTAAGCACATCCAATAGCGCCCTGCACGAGTCGTCTCCCATGAGTGAATGCGAATGCCATAAGAGAGACCTCACTTCTTGAAAACGCTGCATACGTATACGATTGCGCGAGGCTTGGTGCGATTTTTATAGGTTTCTGCAACATACTGATTTTACTGTTCTTTAATAATATTGTTCTGGTCAAAAATCGATCTAAACCGCTGGTGAACTTTCTACTGAACATTTTTATCTTGCAGAACAGCCATCTACAATTAGT # Right flank : TGTTCCGAAACCCTTAATAGCCTTATCCGGGCTCTTCGTCGTTGGGTGTGGAATTCGCCCCCTGAGCTGGGCCAGGATATGACCTCTACGACGATAGGAGGTATGGCATGGATGGCACCCAGATTCTGGCCCTCGGCCTGGGCCTGCAAGCGCCCTGGATTCTCAAGGACCAGCACCTGGATACCTCCGTATCGCCCCACCGGTTGGACCTCTACGTCGAGGCCGAGCGTGGCAGCCTCTACCCCTGCCCTGAATGCAGCGAGGCCTGTCCGGCTCACGACTTCGCCGACAAGACCTGGCGGCACCTGAACTTCTTCCAGCATCACTGCTACCTGCACGCCCGAGTGCCCCGCACCAAGTGCCCCGAGCATGGCGTCAAGCGCATCGAAGTGCCTTGGGCGCGCCCGGGCAGCGACTTCACCCTGCTGTTCGAGCAAGCGGCCATGTCGCTGGCCAAAGAGATGCCCGTGCTGGCGGTCTCTCGGCAGTTGGAGATCACC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //