Array 1 339740-340773 **** Predicted by CRISPRDetect 2.4 *** >NC_002570.2 Alkalihalobacillus halodurans C-125, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 339740 32 100.0 36 ................................ TCACTGAAGACTCCACATCCAATGAGTGCGACGATT 339808 32 100.0 34 ................................ CTTACATCAAATTCCACGCACTCAGGCACACATC 339874 32 100.0 36 ................................ GAAGGAAATGAAGTTTTGATAAACTCCGTCTATACC 339942 32 100.0 35 ................................ CTAAAATCATCCGCCCAGCTCTGTAAGTTAGCCTT 340009 32 100.0 35 ................................ GGATTTTACGAGACATGGAGCGATATATAAACGCG 340076 32 100.0 36 ................................ TTAAGGGAGATGAATAACGATGACTAAAATCTTCAT 340144 32 100.0 34 ................................ CCCTTTTTGTCTTTGTCGAAATATGCCGCCTTTC 340210 32 100.0 35 ................................ ACTAACTAGGGGGATATGATCATGTTTAACCTGAG 340277 32 100.0 34 ................................ AAGAATACGCGCGCAACAAAAAAACTTTTAAAAA 340343 32 100.0 36 ................................ TATTTGTTGATCCCAAGTATCAATACCCCGACTCTT 340411 32 100.0 34 ................................ TCTCAACGTTGCCCTCAGGGCGTACTCTTTTACT 340477 32 100.0 33 ................................ TTGCGTGTAAATCATCACGACGCCCTGTCTTTG 340542 32 100.0 35 ................................ TTGATTTGTTATTGCCCTATCTAATTTTTGATCAA 340609 32 100.0 33 ................................ TTCGAAGAGAATCAAGATCTGATACTGCTTCCA 340674 32 93.8 36 ..........T....G................ TTCAAAAATTACAACCTCATGAGGTGTTAAATTCAC 340742 32 96.9 0 ...........T.................... | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 99.4 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CAGCATGCTCATTCACTTACCCAGAAACGGATGATCGAAACATGACCGATTATTTGCATCGCGTAAAAAACTTGTCAGCCGATGCAACGGATATGTAGGAATAACCGCACCCTGAAGATAAGCGGGGTGCCTCTTATGACAAATGGAAGGAATGGAGACGGAGAAATGAGCCTCTTCCTACTCGCTCTAAGTCGCTGGGAGGAGCCAAGGACGTTGTGATGAGGAATAAAAGAAAAGGGAGGGTGCTCTAGCAAACGGTTAACAAACCGTTAGTCTTTCGTGGTATCCTTATGTTAGGTTGGGAAACAGCTCGGATTTTGGTGCGAACCCTAAGCGCACATAAAATCCCTAGGGGACCCGCACCAAAAAACGAGGATATTATGTGTAAATGTGTGCCGATATGTAATAAAATGAAATAAGGAACATGTTGTAATGAAGAAAAAATGAGAGAATCCCCTAATGACAGGTGAATATTTTCCATTCATTAGGTGATTTTCGCT # Right flank : TATGCCTCTCAATCATGCTTGATTCGAGTTAACACTTACGAACGTGTAATCGAATAAAATCAAGTCAGTGGTTAAAAGGACCTTACAGACTAGGAACGAAAATTGCTGATGGTCCTTTACGATTAATGCAGGCTAGCCACTTGCCCTGCTCGTCATCAGTCTGCGTACAGGGAGGAGTGAGTGAATGGCTAGCCCTTGAAAATGGTTGCTTAAAGGTGATGAGGGGTGTAATAAAAGAAACCGCCCCTCACTAGGTAGAGACGGTGATTTTCCAATTCTTTTGTATAGTTGTTTAATCCAAGAAACCAAACATCTCTAAATTTTCCAAGTACCATTGGAAATATTCATCCTCTGGATCTTCCTTATAAGTTAGGAGGCCAGCCTCAATTTCCCCTGCGATGATTAACGCATTAATATAACGGCCAATCTTTTCACATTCGCGTACAATGAATTCGGTGACATGTTTACCGTCCTTACTTTCAAGAATTACATTGACCCTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 345991-347088 **** Predicted by CRISPRDetect 2.4 *** >NC_002570.2 Alkalihalobacillus halodurans C-125, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 345991 32 100.0 35 ................................ CATCGGTCTTAAATTCAAGACCTGTAGGATCTCCT 346058 32 100.0 35 ................................ TTTAAATTTGGTTTACTCCACCTAATGTAGTTATT 346125 32 100.0 34 ................................ ACAACCACGCATCGTAAACGATCAGCACAACCAC 346191 32 100.0 35 ................................ AATCTGATAAGCTTCCTCAAACCAAGCCCAACAAA 346258 32 100.0 33 ................................ CATCCAGACAACCACAGCAACGAGGAGTTGATC 346323 32 100.0 34 ................................ CAGCCCATTATATACTTAATTCCATTAGCTTTAT 346389 32 100.0 36 ................................ ACCGGGCTCCAGCATGGCCTGTGGGCGGCACTGGGC 346457 32 100.0 34 ................................ ATCAAAAAAGAACAGTGAAGAGGCCTTAAAAAAA 346523 32 100.0 34 ................................ CCCGATACGCTCCACAAGATCGACAATCCGTGAC 346589 32 100.0 36 ................................ CAAATGTATCTTTTTCCTGTGTTTCTGCATCAAAAA 346657 32 100.0 36 ................................ CTGCTCGCCGTGACACACCGCATTTGTGTGCATGTA 346725 32 100.0 34 ................................ TCTTAAATCTTTTATCAATTGCTCTCTTGTAACA 346791 32 100.0 33 ................................ CAAATGTTGTTTCTGGCATTGACTAATTCCCAT 346856 32 93.8 34 ...........T.T.................. TGCTATCTTGTCTCTTAATTGTTGTAAGGCCTGT 346922 32 87.5 35 ...........T.T.G..A............. ACCCAAGACAATCGTGGGAAAGTAAGACCTGTCGT 346989 32 96.9 35 .............T.................. GCTCGATTGATGTACGGCATATCTGCTGTCAACAA 347056 32 96.9 0 .......................A........ | T [347086] ========== ====== ====== ====== ================================ ==================================== ================== 17 32 98.5 35 GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Left flank : ACATTTGTCGCACGTACCTCTTATATTCCCAGTTTTCAGCAGAGCTAGCCGATATGTATTTACATCTTTCTTGCAAAAAAAGAGGTTTGTCTCAGGCTGATATTTTTCAGTGGGCACCAATTATAGCAGGAGCAAGACTGTCAGAAACGGTTATATCAGAAAAAGCGGAACGTCTGATCGAAATAGTAAAACATCATTTTCCCCGCTAGCTTGTATGCAGGTGCATCAGAAGAATGTCCGCTGTTTTTTGTTAAGGGCTTTACAACGAAAGAAAAGGACAGTGAGTATAAATGCTGCTATTGGTATCTAGCAAAAAAGGTCACCTCCTTCTGGTGCGAACCCCAAGCGCACATAAAATCCCTGGGAGATCCGCACCTGTTGATATGACTGGTTTTTTGGAGAAATGTATAGCGAATAATGCCAAATAATAGTAAACTAAAAATAGGTTCGCACCTTTGCTCACTGGAAGCCTTGTCTCGCAAGCCTTCCAACTGGGCGCT # Right flank : TATCGGCTGTATTTACTATTTTGGCTCTATCAAATTATGCTTCATCAATTATTATGGTTACGCACCATTTGTATAAGCTACTTACTCTAGAACCTCCACTGATGCTTTGTTTTACCTAGACTCTATGCTATAAAGTATCATCAAAAAACCCCGCATAATTAACAATTAATAATGAATCGACTGTTTACTAAACGTGCTTACTTTTTATAGTTTCTTATCAGGATCAAAAATCAGAGCATATAGGTGTTAGTTTTCATTTTCTCCAGATAAAAACTAAAGGTAGAAAAAGAGGAAATAGTCGATGGGTGTAGAATAAGATAAACAATAGTTAATAGTTCTTTAAGCCTGAGTATTTAGTTTTATTAAACATAAGTAATAAAGAAAGGAGATTGCCAGTGAAATCATCAAAAAGAGTGCCAAATCTGACATTTGAAAAGTTAGAAGAAACTTTAAATACACTGAAAGAAAGGGCAGATAAAACAAAAGAGTCTTTAAATATT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 355361-356329 **** Predicted by CRISPRDetect 2.4 *** >NC_002570.2 Alkalihalobacillus halodurans C-125, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 355361 32 100.0 34 ................................ TTGACGAGATATACACGAAGAATGTACCTGAAGG 355427 32 100.0 35 ................................ CCTTTGACGGAGAGGGGAACAGGAAATTAGAGAAG 355494 32 100.0 34 ................................ GTTGCGCACCGCTCCTTGCGGCGACGTGTCGGGC 355560 32 100.0 36 ................................ CCTACCGCGCGCCACGTCGTTAAATCCTCTAGCGTC 355628 32 100.0 33 ................................ TAGTATGTCGCGCAGCCTTGTCGTTACTCCTTC 355693 32 100.0 36 ................................ CAAGGCGTCGCGTCCGTAACCTCCTCGTACAGACAA 355761 32 100.0 37 ................................ AGATTTTAGGATACGGTAGATTTCCTCGAACACACGC 355830 32 100.0 35 ................................ CCTTATGAATGGATGGATAGGAACGGAAGAATGTC 355897 32 100.0 36 ................................ GTGCGGTAGATGATCCAGACTTTGATCGCCGTAATT 355965 32 100.0 36 ................................ GAAGTATGACAAGTTTGTAGGGCTTGAAAATTCATG 356033 32 100.0 35 ................................ TATCTGTTCGACCACTTCTACATGGTCGTGGTATT 356100 32 100.0 34 ................................ CATTCAAACAGAACAAGGGATTTTCGAACCAGAA 356166 32 100.0 34 ................................ GCCATGAATTTAGCCGTAAGAGACTTCAAACTGA 356232 32 100.0 33 ................................ CCTTATCGTCGTGTTAACATTGTAGGATATGAC 356297 32 75.0 0 ..........AT...A.........A.AGGT. | T [356320] ========== ====== ====== ====== ================================ ===================================== ================== 15 32 98.3 35 GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Left flank : AAAATTGACTTGATCGTATACAGGTACGAGAAGCTTGAAAATGCGGCGCAAGAAAATAAAATAAGAGAATATATAAAAATATTAAAGAAGAATAATTCAAGAATACCAATAGTGATTTATACCAAATCTAAATTAGAAGGTGAAGATGAAAGTTCGGTAAATTCATACTACTATTCAACCTTTGCAAACATGCCAGTTACTTTAACAACAAATATGATTTCTCTCCTAAGTATAATTTCATATGAGAAAAAGATTGAGGAAAATTAATTGAGAAAAATTTAAAAATACATCTAAAAACCTTCGATGATATAAAACTATGAATTTGTAAATGGTGCGGACCCCAAGCGCACATAAAATCCCTGGGAGGTGCGCACCTGTTGATGCGACTGGATTTCTGATAAAATACATAGCGAAAAATGCCAAATTGTAGTAATCTAAAAACAGGTTCGCACTTTTGCCCAGTTGGAAGCCTTGTCTCGCAAGCCTTCCAACTGGGCGCT # Right flank : TACACTTAGTTGGACAGTTTCGTTAAGGTCATATACACTTGATTCAAATAAACTCTGAGGAGAATCAAACATGACCAAGCGTCCGAGAAGAAGCTATACAAAAGAATTTAAGGATCAAATCGTTCAACTTCATGTTTCTGGCAAGCCCCGTGCAGAAATTATCAAAGAATACGAGCTGACGCCTTCTGCCTTTGATAAGTGGGTTCGGCAGCACCAGAACAGTGGATCCTTTGAAGAAAAAGACAACCGTACACCCGAACAGGAAGAGTTGATTCGGCTGCGGAAAGAGAATCAAAAGCTTGCCATGGAGAATGATATTTTAAAGCAAGCCGCGCTGATCATGGGACGAAAGTAGATGTGATTCGGAACAACCGCCACAAATACTCGGTATCAGCAATGTGCGATGTCCTGCAAATGGCCCGAAGTACGTACTATTATGAAGCAAAAATTCGAGACGACCAGGATGAAGAGTTGTCGGAACTGATCGTTGATATTTTTAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 366106-368458 **** Predicted by CRISPRDetect 2.4 *** >NC_002570.2 Alkalihalobacillus halodurans C-125, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 366106 32 100.0 35 ................................ ATTGAGGTAGGTATTGATTCGTTGGACATGATCAT 366173 32 100.0 34 ................................ GCGACATCATCCGACCCGCCAAAGACAATGTTTA 366239 32 100.0 35 ................................ ATCAACATCTATGTGGCTGGAATTTGGCTGAAATC 366306 32 100.0 33 ................................ CTCTGCTACCATCAAGTTTTTCTTGTACTTCAC 366371 32 100.0 35 ................................ ATTCCTCCTACATTTTTTTACGTGGTATAGTCCAC 366438 32 100.0 35 ................................ AAGGTTGGCTGTCATTTCGTTAACAGAAATTTCCG 366505 32 100.0 34 ................................ TCGAAAGTTTCGAGGAGTCTAACGGAGCGGAAGA 366571 32 100.0 35 ................................ CGCCCACTTACGAATAACAGCAAGAACGTGCATAA 366638 32 100.0 35 ................................ AAGAACTCCGTCAGTAACAGCACGAGCTAGGTTAA 366705 32 100.0 34 ................................ AATGCGTTGCACCCATCCGCCAGATACGAGACGG 366771 32 100.0 34 ................................ TTCTTTTGTCCATCGTTGGTGTTTTTCCATACAC 366837 32 100.0 34 ................................ TTTTGATGAACACCTATTGACATTAGGAACGAAA 366903 32 100.0 35 ................................ GGCCACTCTCGAAATCAATCAACCATGTGCTAGAG 366970 32 100.0 34 ................................ GCTTTCGACCTGATACGCTTCTTCGAACCACGCC 367036 32 100.0 34 ................................ ATTATCGTTAGGGTAGGGGTTACTATGAGATGAC 367102 32 100.0 34 ................................ CTAACTGCAACGTTATATACGCGGGCTGTCTTGA 367168 32 100.0 33 ................................ TGGTGTGGAGTATGGTCGTACTGTTCATCAGAC 367233 32 100.0 36 ................................ CCTTTGCGTTGATGTGCTCCCTTACACTGTGATTCG 367301 32 100.0 35 ................................ CGATCTCTTGATTAAGGTAATCAAGTTGCCTCTGT 367368 32 100.0 33 ................................ GTCTAGCGTCTAATTAGACGCTACCACTGTAGT 367433 32 100.0 35 ................................ ACACTGACCGCCTCCTATTTTTCAAAAGGGAAGTT 367500 32 100.0 34 ................................ AAATCCGAAATCCATTCCCGCTCGAAAAATAGGT 367566 32 100.0 35 ................................ CATTCTTCACGCTGTCTTTTCCATCTGTAGCATGT 367633 32 100.0 34 ................................ ACGAGAAGAACAAGAAACTACGTTGGTTTTTGAC 367699 32 100.0 34 ................................ TGATCGTTAAACTCCTCTAGCACTTTATCAGGTG 367765 32 100.0 35 ................................ TCGTCCGCCACTTCCGCCTGTAATTTCGGAATCTC 367832 32 100.0 36 ................................ CAAAGTGATCGGATCATTCGTTTAATCCCTCCCCTT 367900 32 100.0 33 ................................ ATCTCCCTTAAGAATTGTGATAGCTTGCTTTAA 367965 32 100.0 33 ................................ ACTTTAGAATTACACAAGCGTGCAACAGGAGGA 368030 32 100.0 35 ................................ GCTCCTTCCAGTCCGTAGGCTGATCACGGGGAGTG 368097 32 100.0 33 ................................ TAATCGTGTGTATAAATTTAAATCTGCTTCTCG 368162 32 100.0 33 ................................ TGACCACATGCCTACCTTCTCTTGTTGAGCTTG 368227 32 100.0 36 ................................ TAGGTATGAGGTTTTGTATTCCTCATCCGTCTTCAT 368295 32 96.9 35 ....................A........... AATTCTTATTCCCGCAATCTCGGCCATACGCAAGC 368362 32 100.0 33 ................................ GGAAATCTCTATTGGTGAGAAAAAGGGGAAAGG 368427 32 96.9 0 ...............A................ | ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.8 34 GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Left flank : GCCATTTCTGTGGAAGTAGGTGAAAGCATGCTTGTTTTAATTACGTATGATGTCCAAACCTCAAGCATGGGAGGCACGAAAAGGCTTCGAAAAGTGGCCAAAGCGTGCCAAAATTATGGACAACGAGTGCAAAACTCTGTCTTTGAGTGCATTGTGGATTCAACTCAATTAACGTCGTTGAAATTAGAACTCACTAGTTTAATTGATGAAGAAAAAGACAGTTTGCGCATCTACCGATTAGGAAACAACTATAAAACCAAAGTAGAGCATATTGGAGCCAAGCCATCTATCGATTTAGAGGACCCTCTTATCTTTTAATGGTGCGAACCTCAAGCGCACATAAAATCCCTAGGGGACCCGCACCAAAAAACGAGCGTATTATGTGTAAATATGTGATACTATGTAATAGAATGTAGATCACGAACATGGAAAAAGAACAGAATGAACGAAAATTCCCTATTTTATCAAAGTGATTTTCTAGAATCTAGGGGATTTTCGCT # Right flank : TAAGTCCTCCGCGATCCAATCGAGAAATCGATTCACGTCCCACTCTACATGAGTGCGTGCTGCACGGGTTGCTTCCTAATTACTCCAATCAATCTGTTCTTACAGGATGACGATGCTACTTTCAATAACGTGTCAAGAACTTTGGTATTTGAACACTGCTAGGAGAGGTCGGCTGAATGGACTTCGGCATCCCAATAGCCTTGGGGGAACTAAGACAAAAAACTATTAATGGCCATTTGCCGGAAGTGGAAGTGTCCTATTAGACAAAGGGGATTTTTCCCATGCATGTGGGCTTCATTCCGAGAATATTAGCTCCTCACTAAGATAAAAGGAAGAACGAGCCTTTAAGTGGAGGAAGGTCTCTAGACAAGGCTACGTTCCCTCAATACAATGAGCGCGACTGGATGTTTTTTAAGATTCTAATTATGACGGCTTCTTCGGGAATACAGTATAAGACCAGGAATAAATCGTATCAACGACGAAAATAATGCCCCACAGCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 378211-378913 **** Predicted by CRISPRDetect 2.4 *** >NC_002570.2 Alkalihalobacillus halodurans C-125, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 378211 32 100.0 35 ................................ AAGAGAGGAGGTTACGCTTTGACTGGCGATACGTT 378278 32 100.0 35 ................................ TATCAAATTGCCAGTAGATGTTGAGATAGTCGACG 378345 32 100.0 34 ................................ TCCGATCGACGGTCTTGTGAATCTTGTAAAAGAA 378411 32 100.0 36 ................................ CGTCTAATTTTAAAGTGAACTTTTCAAGTAATTCAT 378479 32 96.9 33 ............G................... ACCAGTTGTCATTGGTCTATCTCACCTCCCCTC 378544 32 100.0 36 ................................ AAGATTACCGAAAATCGTCGTAAACTTGTCGCGTAC 378612 32 100.0 34 ................................ CTTACTTGGAAAGGGATTGCTATGACATACGAAA 378678 32 100.0 37 ................................ AGCAGCTCACCGGCCAAGTGCAAGACACTACAGCCGT 378747 32 100.0 35 ................................ GCTTGCGTCATGTCGCGGAAATAGACGAGGTTTAG 378814 32 100.0 36 ................................ TCTAAATGATTTTAATTGCACAAAAAAGACCGAGTT 378882 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 99.7 35 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : CAATTGATCCAACAAGTAGCTTCCACAATCGGGCTCGAACTGACGGAAACAGCCACCGGTGGCAGCTCCGACGCCTCATTCACGTCAGCATTAGGCATCCCGACAATTGATGGCATGGGCCCTGTCGGCGGCTTTCCCCATAGCGAAAAGGAATATTTGCGAGTGGACACGATGCAAGAGCGTACCTTGCTGCTGGCGAAAGTCATTGAGCGTTTGTCGGAGTGAGGGTGGGTGCTATTTTATTCGCTCAGCTTTAAATGGGAGACTACTCCTTTACTAAATAAGTAGTAAGTAGGCATTGAACGAGATCTTGTATTCAAAAACCAAGCGTGGTGCGAACCCCAAGCGCACATGGAATTCCTGGGAGGTTCGCACCCGTTGGTATAACTGAGTTTTTAATGAAATGCATAGCATAAAATGTAAAATGATAGTAAACTAAAGATAGGTTCGCACTTTTGCCCGTAAAAACCCTTGAGGGACAAGGAACCAACCTGGGCGCT # Right flank : TCTTATGTTTTGCTCCATGGTACGGTTGTTGAATGTACCTATCATTCTTTTACACTTATTGTTTAGTAAGTTAGCTAGTCAACTAACTTACTTTGTTTCTAGTCATTTTAAAAAGATAACAAATCAGTAAAAGCCACCAGTAGACAACATTCGAAGCATCTTTTGAAAGGAGTTACTCCCGCATGGCAAAACCTAATGTTGTGACGAAAGAAGAATTAATCGAGGCAGCCAAGCGCTGTATTGTTGAAAAAGGAATTCATAGTTTAACCTTGAAGTCGGTTGCCGAGGGGGCCGGTGTCACCCAAGGAACCGTATATTATCATTTTAGAAGCAAGGATCAATTGATGTTGGAAATTGTAGAGAGCATGTGTACCTCGGCCTGGCATTCATTAGAATCTATGAGTAAGCAAGAAGGCGAAAATACCCATTGGATTCAAGCGGCCTTGCACTCAGCACATGACCGAACAACGAAAGATGCGTACTTTCATAAACTACTTGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //